Ss1.1-Thy1-THY010071C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGACACTCTGGTTGGCGGCATCATGGCACTAACTGCCCACCTCTCCTGTCTCCTGGTCC TGGTGGTCGCAGGCCCGGCCCAAGGCCTCAAGGACGCCCTCAGAAGCCAGGACCCAGGTC CTCAGCCAATGGGGCTGAAAGAGGTCTTCACCTTGTTCCAGATCCAATACAACCGGAGTT ACTCGAACCCAGCAGAGCACGCTCGCCGCCTGGACATCTTTGCCCAAAACCTGGCCAAGG CTCAGCGGCTGCAGGAGGAGGACTTGGGCACAGCCGAGTTTGGAGTGACTCCATTCAGTG ATCTCACAGAGGAGGAGTTTGGCCAGCTCCATGGGCATCACTGGGGGGCTGGCAAGGCCC CCAGTATGGGCATAAAGGTAGGGTCTGAAGAGTCGGGGGAGACAGTGCCCCAGAGCTGTG ACTGGCGGAAGAAGCCTGGTGTCATCTCGGCCATCAAGCATCAGAAGGACTGCAACTGTT GCTGGGCCATGGCGGCAGTGGACAACGTGGAGGCTCAATGGGCCATCAAGTACCACCAGG CTGTGCAACTCTCTGTGCAGCAGGTGCTTGACTGTGACCGCTGTGGGAATGGCTGCAACG GCGGCTTCGTCTGGGACGCGTTCCTGACTGTCCTCAACACCAGCGGCCTGGCCAGCGAAC AGGACTACCCGTACAAGGGGACCGTCAAAACCCACAGGTGCCTGGCCAAGCAGCACAGGA AGGTGGCCTGGATCCAGGATTTCCTCATGCTGCAGTTCTGCGAGCAGAGCATCGCCAGGT ACTTGGCCACCGAAGGCCCCATCACCGTGACCATCAACGCGGGCCTACTGCAGCAATACA AGAGGGGAGTGATCAGGGCCACTCCTGCCACCTGTGACCCCCACCTTGTGAATCACTCTG TCCTGCTGGTGGGCTTTGGTAAAAGCAAGTCTGTGGAGGGGAGGCGGCCGCGTCCTGGCC ACTCCATCCCATACTGGATCCTGAAGAACTCCTGGGGGCCCGACTGGGGTGAAGAGGGCT ATTTCCGGCTGCACCGAGGGAGTAACACCTGCGGCATCACCAAGTACCCGGTCACTGCCA GAGTGGACAAACCCGTTAAGAAGCACCAGATCTCCTGCCCGCCCTGAGCCCACCCGGCTG CACCTCAGTTCTCTCCTGCTGTGCCAGCAGCGCCCTCACTTTCCCCGCTCCAAGGTTTTT GCCGCCTCCCCCAGTAGGCTTGCTTCTTATTGAATAAACCAAGATAAGCCCCCTGAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGACACTCTGGTTGGCGGCATCATGGCACTAACTGCCCACCTCTCCTGTCTCCTGGTCC TGGTGGTCGCAGGCCCGGCCCAAGGCCTCAAGGACGCCCTCAGAAGCCAGGACCCAGGTC CTCAGCCAATGGGGCTGAAAGAGGTCTTCACCTTGTTCCAGATCCAATACAACCGGAGTT ACTCGAACCCAGCAGAGCACGCTCGCCGCCTGGACATCTTTGCCCAAAACCTGGCCAAGG CTCAGCGGCTGCAGGAGGAGGACTTGGGCACAGCCGAGTTTGGAGTGACTCCATTCAGTG ATCTCACAGAGGAGGAGTTTGGCCAGCTCCATGGGCATCACTGGGGGGCTGGCAAGGCCC CCAGTATGGGCATAAAGGTAGGGTCTGAAGAGTCGGGGGAGACAGTGCCCCAGAGCTGTG ACTGGCGGAAGAAGCCTGGTGTCATCTCGGCCATCAAGCATCAGAAGGACTGCAACTGTT GCTGGGCCATGGCGGCAGTGGACAACGTGGAGGCTCAATGGGCCATCAAGTACCACCAGG CTGTGCAACTCTCTGTGCAGCAGGTGCTTGACTGTGACCGCTGTGGGAATGGCTGCAACG GCGGCTTCGTCTGGGACGCGTTCCTGACTGTCCTCAACACCAGCGGCCTGGCCAGCGAAC AGGACTACCCGTACAAGGGGACCGTCAAAACCCACAGGTGCCTGGCCAAGCAGCACAGGA AGGTGGCCTGGATCCAGGATTTCCTCATGCTGCAGTTCTGCGAGCAGAGCATCGCCAGGT ACTTGGCCACCGAAGGCCCCATCACCGTGACCATCAACGCGGGCCTACTGCAGCAATACA AGAGGGGAGTGATCAGGGCCACTCCTGCCACCTGTGACCCCCACCTTGTGAATCACTCTG TCCTGCTGGTGGGCTTTGGTAAAAGCAAGTCTGTGGAGGGGAGGCGGCCGCGTCCTGGCC ACTCCATCCCATACTGGATCCTGAAGAACTCCTGGGGGCCCGACTGGGGTGAAGAGGGCT ATTTCCGGCTGCACCGAGGGAGTAACACCTGCGGCATCACCAAGTACCCGGTCACTGCCA GAGTGGACAAACCCGTTAAGAAGCACCAGATCTCCTGCCCGCCCTGAGCCCACCCGGCTG CACCTCAGTTCTCTCCTGCTGTGCCAGCAGCGCCCTCACTTTCCCCGCTCCAAGGTTTTT GCCGCCTCCCCCAGTAGGCTTGCTTCTTATTGAATAAACCAAGATAAGCCCCCTGAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 828-917, - strand, RNAz p=0.551629 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 828-917, - strand, RNAz p=0.551629 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 3-111, gnl|bosTau2|chr29 (30495159-30495267) | |
| 3-111, gnl|canFam2|chr18 (54411837-54411618) | |
| 3-111, gnl|echTel1|scaffold_293968 (11946-11736) | |
| 3-111, gnl|hg17|chr11 (65403823-65404031) | |
| 3-111, gnl|Hg17|chr11 (65403881-65403989) | |
| 3-111, gnl|mm7|chr19 (5363364-5363168) | |
| 3-111, gnl|Mm7|chr19 (5363315-5363208) | |
| 3-111, gnl|monDom2|scaffold_107 (2991207-2990985) | |
| 3-111, gnl|panTro1|chr9 (66650258-66650466) | |
| 3-111, gnl|rheMac2|chr14 (8575036-8574828) | |
| 3-111, gnl|rn3|chr1 (208265539-208265337) | |
| 194-309, gnl|bosTau2|chr29 (30496414-30496529) | |
| 194-309, gnl|canFam2|chr18 (54410319-54410153) | |
| 194-309, gnl|dasNov1|scaffold_194372 (4480-4325) | |
| 194-309, gnl|echTel1|scaffold_293968 (10802-10636) | |
| 194-309, gnl|hg17|chr11 (65405417-65405584) | |
| 194-309, gnl|Hg17|chr11 (65405452-65405567) | |
| 194-309, gnl|loxAfr1|scaffold_11359 (4868-5034) | |
| 194-309, gnl|mm7|chr19 (5361974-5361818) | |
| 194-309, gnl|Mm7|chr19 (5361944-5361829) | |
| 194-309, gnl|monDom2|scaffold_107 (2988657-2988508) | |
| 194-309, gnl|oryCun1|scaffold_75575 (695-531) | |
| 194-309, gnl|panTro1|chr9 (66651852-66652019) | |
| 194-309, gnl|rheMac2|chr14 (8573158-8572991) | |
| 194-309, gnl|rn3|chr1 (208264097-208263938) | |
| 633-769, gnl|bosTau2|chr29 (30497551-30497688) | |
| 633-769, gnl|Hg17|chr11 (65406815-65406952) | |
| 633-769, gnl|Mm7|chr19 (5360962-5360825) | |
| 828-945, gnl|bosTau2|chr29 (30498045-30498162) | |
| 828-945, gnl|canFam2|chr18 (54408235-54407915) | |
| 828-945, gnl|echTel1|scaffold_293968 (9206-8913) | |
| 828-945, gnl|hg17|chr11 (65407058-65407360) | |
| 828-945, gnl|Hg17|chr11 (65407249-65407373) | |
| 828-945, gnl|loxAfr1|scaffold_11359 (6282-6563) | |
| 828-945, gnl|mm7|chr19 (5360724-5360446) | |
| 828-945, gnl|Mm7|chr19 (5360548-5360431) | |
| 828-945, gnl|monDom2|scaffold_107 (2983613-2983257) | |
| 828-945, gnl|oryCun1|scaffold_193912 (5793-6081) | |
| 828-945, gnl|panTro1|chr9 (66653493-66653795) | |
| 828-945, gnl|rheMac2|chr14 (8571517-8571211) | |
| 828-945, gnl|rn3|chr1 (208262786-208262508) | |
| 1015-1252, gnl|bosTau2|chr29 (30498339-30498576) | |
| 1015-1252, gnl|canFam2|chr18 (54407914-54407584) | |
| 1015-1252, gnl|echTel1|scaffold_293968 (8912-8577) | |
| 1015-1252, gnl|hg17|chr11 (65407361-65407698) | |
| 1015-1252, gnl|Hg17|chr11 (65407553-65407785) | |
| 1015-1252, gnl|loxAfr1|scaffold_11359 (6564-6898) | |
| 1015-1252, gnl|mm7|chr19 (5360445-5360116) | |
| 1015-1252, gnl|Mm7|chr19 (5360259-5360049) | |
| 1015-1252, gnl|monDom2|scaffold_107 (2983256-2982921) | |
| 1015-1252, gnl|panTro1|chr9 (66653796-66654133) | |
| 1015-1252, gnl|rheMac2|chr14 (8571210-8570879) | |
| 1015-1252, gnl|rn3|chr1 (208262507-208262178) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-111, gnl|bosTau2|chr29 (30495159-30495267) | |
| 3-111, gnl|canFam2|chr18 (54411837-54411618) | |
| 3-111, gnl|echTel1|scaffold_293968 (11946-11736) | |
| 3-111, gnl|hg17|chr11 (65403823-65404031) | |
| 3-111, gnl|Hg17|chr11 (65403881-65403989) | |
| 3-111, gnl|mm7|chr19 (5363364-5363168) | |
| 3-111, gnl|Mm7|chr19 (5363315-5363208) | |
| 3-111, gnl|monDom2|scaffold_107 (2991207-2990985) | |
| 3-111, gnl|panTro1|chr9 (66650258-66650466) | |
| 3-111, gnl|rheMac2|chr14 (8575036-8574828) | |
| 3-111, gnl|rn3|chr1 (208265539-208265337) | |
| 194-309, gnl|bosTau2|chr29 (30496414-30496529) | |
| 194-309, gnl|canFam2|chr18 (54410319-54410153) | |
| 194-309, gnl|dasNov1|scaffold_194372 (4480-4325) | |
| 194-309, gnl|echTel1|scaffold_293968 (10802-10636) | |
| 194-309, gnl|hg17|chr11 (65405417-65405584) | |
| 194-309, gnl|Hg17|chr11 (65405452-65405567) | |
| 194-309, gnl|loxAfr1|scaffold_11359 (4868-5034) | |
| 194-309, gnl|mm7|chr19 (5361974-5361818) | |
| 194-309, gnl|Mm7|chr19 (5361944-5361829) | |
| 194-309, gnl|monDom2|scaffold_107 (2988657-2988508) | |
| 194-309, gnl|oryCun1|scaffold_75575 (695-531) | |
| 194-309, gnl|panTro1|chr9 (66651852-66652019) | |
| 194-309, gnl|rheMac2|chr14 (8573158-8572991) | |
| 194-309, gnl|rn3|chr1 (208264097-208263938) | |
| 633-769, gnl|bosTau2|chr29 (30497551-30497688) | |
| 633-769, gnl|Hg17|chr11 (65406815-65406952) | |
| 633-769, gnl|Mm7|chr19 (5360962-5360825) | |
| 828-945, gnl|bosTau2|chr29 (30498045-30498162) | |
| 828-945, gnl|canFam2|chr18 (54408235-54407915) | |
| 828-945, gnl|echTel1|scaffold_293968 (9206-8913) | |
| 828-945, gnl|hg17|chr11 (65407058-65407360) | |
| 828-945, gnl|Hg17|chr11 (65407249-65407373) | |
| 828-945, gnl|loxAfr1|scaffold_11359 (6282-6563) | |
| 828-945, gnl|mm7|chr19 (5360724-5360446) | |
| 828-945, gnl|Mm7|chr19 (5360548-5360431) | |
| 828-945, gnl|monDom2|scaffold_107 (2983613-2983257) | |
| 828-945, gnl|oryCun1|scaffold_193912 (5793-6081) | |
| 828-945, gnl|panTro1|chr9 (66653493-66653795) | |
| 828-945, gnl|rheMac2|chr14 (8571517-8571211) | |
| 828-945, gnl|rn3|chr1 (208262786-208262508) | |
| 1015-1252, gnl|bosTau2|chr29 (30498339-30498576) | |
| 1015-1252, gnl|canFam2|chr18 (54407914-54407584) | |
| 1015-1252, gnl|echTel1|scaffold_293968 (8912-8577) | |
| 1015-1252, gnl|hg17|chr11 (65407361-65407698) | |
| 1015-1252, gnl|Hg17|chr11 (65407553-65407785) | |
| 1015-1252, gnl|loxAfr1|scaffold_11359 (6564-6898) | |
| 1015-1252, gnl|mm7|chr19 (5360445-5360116) | |
| 1015-1252, gnl|Mm7|chr19 (5360259-5360049) | |
| 1015-1252, gnl|monDom2|scaffold_107 (2983256-2982921) | |
| 1015-1252, gnl|panTro1|chr9 (66653796-66654133) | |
| 1015-1252, gnl|rheMac2|chr14 (8571210-8570879) | |
| 1015-1252, gnl|rn3|chr1 (208262507-208262178) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fty (0.879198) | |
| med (0.813764) | |
| lnt (0.426925) | |
| cly (0.361925) | |
| csp (0.322373) | |
| cag (0.302389) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.879198) | |
| med (0.813764) | |
| lnt (0.426925) | |
| cly (0.361925) | |
| csp (0.322373) | |
| cag (0.302389) |