Ss1.1-Thy1-THY010071H07.5
|
CCGCTCCCTCTCACACAACGAGCCTCAGGCGTGCGGCCCTGCTACCCAGACCATTGACCT
CATCACCGACCAGCTAGCCTGGCCCTTATCGCTTGTGGAGCCCCCCTGTCCGAGTCAGCC
TGCCAAGGAGACCCTCAACGGGGCCCATATTTCACTCAAGGGTTTGATCTCCTGAGGTGG
GAGGTGAGGCCGGGTTCCGCGCTGAGGGACCTGGGTAGGGTGTGCTGGTTTTGCAGTACG
GAAGCTGCAAAGCAACGAGTGGAACCTCCCCGCGAATCGGCTTCCTGCTTCCGGACAAAT
GTCAAGTCTGTTGTTTTTGTTTGAGAAGAATACCCCGAAATAGGATCCAGGAAGATTTAA
AGAGCCAGGCTGATTGTTTTCCTTAATGGTGTCTGTAGGTGATTCTGGTCATTGCAGGAC
CATCTGGGACTTGGCTTCCCCCTGCCTAATCTCATTTTCCCAACTCTCCCCAAAGCCATG
TCCGGGTCCTCCCTCATTAACTTTACCCCAGCCACTGACCCCAGTGATCTCTGGAAAGAT
GGGCAACTGCAGTCACACCCTGAAGAGCTGGAGCCCACCCTGGATGGGGCTGCAGCCCGG
GCTTTCTATGAAGCTTTGATTGGGGACGAGGACAGCACCCCTGAGCCCCAGAGATCTCAG
CCTGAGCCTGCTAGAAAGAGGAAGAAAAGACGAACGATGAGGGAGACTACAGCAGGAGCA
TCAGGAGAAGATGGACAAAGGAGATCCCTTGAGGCAGAGGACAAGATGACCCAGCAGATA
CTGAGGGCAGCCCAGGAGGGGGACCTGGCAAAACTGAAAAAGCTGTTGGATCCCCATGAG
GCAGGGGGAGCTGGAGGGAATATCAACGCTCGAGATGCTTTCTGGTGGACCCCACTGATG
TGTGCTGCCCGAGCAGGCCAGGGGGCAGCTGTGCGCTATCTCCTGGGCCGTGGGGCGGCC
TGGGTGGGGGTCTGCGAGCTGGGTGGCAGGGATGCTGCTCAGCTGGCGGAAGAAGCAGGC
TTCCCTGAAGTGGCCCGCATGGTCAGAGAGAGCCCCGGAGAGACAAGGAGTCCAGAGAAC
CGGCCCCGATCCCTCTCCCCCCAGTACTGTGAGACCTGTGATGCCCACTTCCAAGACTCT
AACCACCGTACATCCACCGCTCACCTGCTCTCACTGTCCCGGGATCTCCAGCCCCCCAAC
CTGCCCCTTGGGGTGCCTACCTCCAGCCCAGGCTTTAAGCTTCTCCTAAGGGGGGGTTGG
GAGCCTGGAAAGGGACTGGGACCCCAAGGTCAAGGCCGTGCCAACCCCATCCCCACTGTC
CTCAAAAGGGACCAGGAAGGATTAGGCTATAGATCAGCAGCCCAACCCCGAGTTACACAT
TTCTCAGCTTGGGATACACGGGCGGTGGCAGGGAGGGAGAGAGTCCCTAGATTGACCACA
CTGAACCAGAAGGAGAAGAGAAGGCAGGAGGAGAAGGACAGAGCCTGGGAGCGGGATCTG
AGGACATACATGAATCTTGAATTCTGACCTCAGCAAGGTCTGACCCTGGTTTGCGGCTGA
AACCTGAACTTGGGCCCCTGAACTGGGTACTTGGGCTTCTACTTCCTGGGGTCTGTCCAG
GGTACAAGCCTTCAGGTTTGATAAGTGGGCTCTGCCCTTGGGAAACAGGTTGAGAAATAA
ATCAAGCTTTTCTCCCTCAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGCTCCCTCTCACACAACGAGCCTCAGGCGTGCGGCCCTGCTACCCAGACCATTGACCT
CATCACCGACCAGCTAGCCTGGCCCTTATCGCTTGTGGAGCCCCCCTGTCCGAGTCAGCC
TGCCAAGGAGACCCTCAACGGGGCCCATATTTCACTCAAGGGTTTGATCTCCTGAGGTGG
GAGGTGAGGCCGGGTTCCGCGCTGAGGGACCTGGGTAGGGTGTGCTGGTTTTGCAGTACG
GAAGCTGCAAAGCAACGAGTGGAACCTCCCCGCGAATCGGCTTCCTGCTTCCGGACAAAT
GTCAAGTCTGTTGTTTTTGTTTGAGAAGAATACCCCGAAATAGGATCCAGGAAGATTTAA
AGAGCCAGGCTGATTGTTTTCCTTAATGGTGTCTGTAGGTGATTCTGGTCATTGCAGGAC
CATCTGGGACTTGGCTTCCCCCTGCCTAATCTCATTTTCCCAACTCTCCCCAAAGCCATG
TCCGGGTCCTCCCTCATTAACTTTACCCCAGCCACTGACCCCAGTGATCTCTGGAAAGAT
GGGCAACTGCAGTCACACCCTGAAGAGCTGGAGCCCACCCTGGATGGGGCTGCAGCCCGG
GCTTTCTATGAAGCTTTGATTGGGGACGAGGACAGCACCCCTGAGCCCCAGAGATCTCAG
CCTGAGCCTGCTAGAAAGAGGAAGAAAAGACGAACGATGAGGGAGACTACAGCAGGAGCA
TCAGGAGAAGATGGACAAAGGAGATCCCTTGAGGCAGAGGACAAGATGACCCAGCAGATA
CTGAGGGCAGCCCAGGAGGGGGACCTGGCAAAACTGAAAAAGCTGTTGGATCCCCATGAG
GCAGGGGGAGCTGGAGGGAATATCAACGCTCGAGATGCTTTCTGGTGGACCCCACTGATG
TGTGCTGCCCGAGCAGGCCAGGGGGCAGCTGTGCGCTATCTCCTGGGCCGTGGGGCGGCC
TGGGTGGGGGTCTGCGAGCTGGGTGGCAGGGATGCTGCTCAGCTGGCGGAAGAAGCAGGC
TTCCCTGAAGTGGCCCGCATGGTCAGAGAGAGCCCCGGAGAGACAAGGAGTCCAGAGAAC
CGGCCCCGATCCCTCTCCCCCCAGTACTGTGAGACCTGTGATGCCCACTTCCAAGACTCT
AACCACCGTACATCCACCGCTCACCTGCTCTCACTGTCCCGGGATCTCCAGCCCCCCAAC
CTGCCCCTTGGGGTGCCTACCTCCAGCCCAGGCTTTAAGCTTCTCCTAAGGGGGGGTTGG
GAGCCTGGAAAGGGACTGGGACCCCAAGGTCAAGGCCGTGCCAACCCCATCCCCACTGTC
CTCAAAAGGGACCAGGAAGGATTAGGCTATAGATCAGCAGCCCAACCCCGAGTTACACAT
TTCTCAGCTTGGGATACACGGGCGGTGGCAGGGAGGGAGAGAGTCCCTAGATTGACCACA
CTGAACCAGAAGGAGAAGAGAAGGCAGGAGGAGAAGGACAGAGCCTGGGAGCGGGATCTG
AGGACATACATGAATCTTGAATTCTGACCTCAGCAAGGTCTGACCCTGGTTTGCGGCTGA
AACCTGAACTTGGGCCCCTGAACTGGGTACTTGGGCTTCTACTTCCTGGGGTCTGTCCAG
GGTACAAGCCTTCAGGTTTGATAAGTGGGCTCTGCCCTTGGGAAACAGGTTGAGAAATAA
ATCAAGCTTTTCTCCCTCAAAAAAAAAAAAAAAAAA
|
|
gi|57094766|ref|XP_538835.1| |
Protein identifier
|
gi|57094766|ref|XP_538835.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
4-228, gnl|bosTau2|chr23 (23325839-23325617) |
|
4-228, gnl|canFam2|chr12 (4152498-4153032) |
|
4-228, gnl|dasNov1|scaffold_15034 (21564-22069) |
|
4-228, gnl|echTel1|scaffold_301888 (21685-21197) |
|
4-228, gnl|hg17|chr6 (31740931-31741427) |
|
4-228, gnl|Hg17|chr6 (31741505-31741291) |
|
4-228, gnl|loxAfr1|scaffold_145682 (272-809) |
|
4-228, gnl|mm7|chr17 (33219188-33218741) |
|
4-228, gnl|monDom2|scaffold_42 (17757109-17756537) |
|
4-228, gnl|panTro1|chr5 (32140318-32140826) |
|
4-228, gnl|rheMac2|chr4 (31309462-31309979) |
|
4-228, gnl|rn3|chr20 (3764032-3764528) |
| |
|
374-1083, gnl|bosTau2|chr23 (23324493-23323784) |
|
374-1083, gnl|Hg17|chr6 (31740349-31739608) |
|
374-1083, gnl|Mm7|chr17 (33220019-33220750) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-228, gnl|bosTau2|chr23 (23325839-23325617) |
|
4-228, gnl|canFam2|chr12 (4152498-4153032) |
|
4-228, gnl|dasNov1|scaffold_15034 (21564-22069) |
|
4-228, gnl|echTel1|scaffold_301888 (21685-21197) |
|
4-228, gnl|hg17|chr6 (31740931-31741427) |
|
4-228, gnl|Hg17|chr6 (31741505-31741291) |
|
4-228, gnl|loxAfr1|scaffold_145682 (272-809) |
|
4-228, gnl|mm7|chr17 (33219188-33218741) |
|
4-228, gnl|monDom2|scaffold_42 (17757109-17756537) |
|
4-228, gnl|panTro1|chr5 (32140318-32140826) |
|
4-228, gnl|rheMac2|chr4 (31309462-31309979) |
|
4-228, gnl|rn3|chr20 (3764032-3764528) |
| |
|
374-1083, gnl|bosTau2|chr23 (23324493-23323784) |
|
374-1083, gnl|Hg17|chr6 (31740349-31739608) |
|
374-1083, gnl|Mm7|chr17 (33220019-33220750) |
|
amn (0.417711) |
|
ese (0.253004) |
|
jej (0.197844) |
|
col (0.195008) |
|
ldo (0.194005) |
|
fbs (0.175346) |
|
cje (0.165235) |
|
nca (0.136874) |
|
che (0.136314) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
amn (0.417711) |
|
ese (0.253004) |
|
jej (0.197844) |
|
col (0.195008) |
|
ldo (0.194005) |
|
fbs (0.175346) |
|
cje (0.165235) |
|
nca (0.136874) |
|
che (0.136314) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
pgl (0.118483) |
|
ebs (0.118301) |
