Ss1.1-Thy1-THY010072B11.5.5
|
ACACGGAAGTGACTACGAACAGGAAGAGGACGAAAAAAATAACCGTCCGCGACGCCGAGC
TGAACCGGACCCGCAGCCACCATGAACAGCAAAGGTCAATATCCAACGCAGCCAACCTAC
CCGGTGCAGCCTCCCGGGAATCCTGTGTACCCTCAGACCTTGCATCTTCCTCAGGCTCCA
CCCTATACTGATGCTCCACCTGCCTATTCAGAGCTCTATCGTCCGAGCTTTGTGCACCCA
GGGGCTGCCACAGTCCCCACCATGTCAGCTGCATTTCCTGGCGCCTCACTGTACCTTCCC
ATGGCCCAGTCTGTGGCTGTTGGACCTTTAGGTTCCACAATCCCCATGGCTTATTATCCA
GTTGGTCCCATCTATCCACCTGGTTCAACAGTGCTGGTGGAAGGAGGGTATGATACAGGT
GCCAGATTTGGAGCTGGCGCTACTGCTGGCAACATTCCTCCTCCTCCCCCTGGATGCCCT
CCCAATGCTGCTCAGCTGGCAGTCATGCAGGGAGCGAATGTCCTCGTAACTCAGCGGAAG
GGAAACTTCTTCATGGGTGGCTCAGATGGCGGCTACACCATCTGGTGAAGAACCAAGGCC
ACCTCTGTGCCGGGAAAGACGTCACATACCTTCAGCACTTCTCACAATGTAACTGCTTTA
GTCATATTAACCTGAAGTTGCAGTTTAGACACATGTTGTTGGGGTGTCTTTCTGGTGCCC
AAACTTTCAGGCACTTTTCAAACTTAATAAGGAACCATGTAATGGTAGCAGTACCTCCCT
AAAGCATTTTGAGGTAGGGGAGGTATCCATTCATCAAATGAATGTGGGTGAAGCAGCCCT
AAGGATCTTCCTGTAATTCCTCTGGAGTAATACTGTACCATACTGGTCTTTGCTTTTAGT
AATAAAACATCAAATTAGGTTTGGAGGGAACTTTGATCTTCCTAAGAATTAAAGTTGCCA
AATTATTCTGATTGGTCTTTAATCTCCTTTAAGTCTTTGATTTAGGTTACTTGTTACAAA
TGAACTGCATTAGCTGTCTGCCTTTTCCTTTTCGTCCTTTGCCCCATGTTCCACCCTCAG
CCCCGGTCTTCGATACCTTCCCGCCAATCTCCATTGAATCAATGGTGCAGGACAGAAAGC
CAGTCAGACTAATTTCCTTCTCTCCTTGCACTTGTCCTCACTCGTCATCTTTTAACCAGT
CTTTCACAAGGATCCTCTGAAACCCCCTCTGTGCCCCAAGCACAGCCCCCATTACTTCTG
CTTTTGCGTCTCTTCAGGCAGAAGTGGAGGGTGCCTTTTGGACCCTCCTTGTAGGCTGTC
TCTTCATACACGAACCAAACCCAAATTTGCTTTGGTGCCAGAAAAACTGAGCTTTGTTCA
ACAAAGGATATCAACACAAACTATCATAAATAGCAGCTTGCTTATCATTTCAGGGGCAGG
GAGGAGGGTGCATTTAAAAGCCTGATGACTCTAGAGCCAAATTAAGGGAAGTTTTCAGAT
CAAAAATTGGTTACCATTTGTCAGTGTCTGATGCAGCCACTCATGGCTCTAAGAATTCCC
GAGCTGGGTGAACGGGGTTGTATTGTGAATGGCTCACTACAAAATGACTTGAGTCCAGTG
AAATCCCATTAGGGTTAGGAATATTTCAGGGATCCTTAATTTTTTGATTTTTGTTTTCTA
AAATTGGATTTTATTTTATTTTAAGTTTAAGTTCATCTAAATTTTGTGTTCTGTACATGT
GATGTTTGACTGTACCATTGACTGTTATGGAAGTTCAGCGTTGTATGTCTCTCTCTACAC
TGTGGTGCACTTAACTTGTGGATTTTTTATACTAAAAATGTAGAATAAAGACTATTTTGA
AGATTTGAATAAAGTGATGAAGTTGCATTACACCTCAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACACGGAAGTGACTACGAACAGGAAGAGGACGAAAAAAATAACCGTCCGCGACGCCGAGC
TGAACCGGACCCGCAGCCACCATGAACAGCAAAGGTCAATATCCAACGCAGCCAACCTAC
CCGGTGCAGCCTCCCGGGAATCCTGTGTACCCTCAGACCTTGCATCTTCCTCAGGCTCCA
CCCTATACTGATGCTCCACCTGCCTATTCAGAGCTCTATCGTCCGAGCTTTGTGCACCCA
GGGGCTGCCACAGTCCCCACCATGTCAGCTGCATTTCCTGGCGCCTCACTGTACCTTCCC
ATGGCCCAGTCTGTGGCTGTTGGACCTTTAGGTTCCACAATCCCCATGGCTTATTATCCA
GTTGGTCCCATCTATCCACCTGGTTCAACAGTGCTGGTGGAAGGAGGGTATGATACAGGT
GCCAGATTTGGAGCTGGCGCTACTGCTGGCAACATTCCTCCTCCTCCCCCTGGATGCCCT
CCCAATGCTGCTCAGCTGGCAGTCATGCAGGGAGCGAATGTCCTCGTAACTCAGCGGAAG
GGAAACTTCTTCATGGGTGGCTCAGATGGCGGCTACACCATCTGGTGAAGAACCAAGGCC
ACCTCTGTGCCGGGAAAGACGTCACATACCTTCAGCACTTCTCACAATGTAACTGCTTTA
GTCATATTAACCTGAAGTTGCAGTTTAGACACATGTTGTTGGGGTGTCTTTCTGGTGCCC
AAACTTTCAGGCACTTTTCAAACTTAATAAGGAACCATGTAATGGTAGCAGTACCTCCCT
AAAGCATTTTGAGGTAGGGGAGGTATCCATTCATCAAATGAATGTGGGTGAAGCAGCCCT
AAGGATCTTCCTGTAATTCCTCTGGAGTAATACTGTACCATACTGGTCTTTGCTTTTAGT
AATAAAACATCAAATTAGGTTTGGAGGGAACTTTGATCTTCCTAAGAATTAAAGTTGCCA
AATTATTCTGATTGGTCTTTAATCTCCTTTAAGTCTTTGATTTAGGTTACTTGTTACAAA
TGAACTGCATTAGCTGTCTGCCTTTTCCTTTTCGTCCTTTGCCCCATGTTCCACCCTCAG
CCCCGGTCTTCGATACCTTCCCGCCAATCTCCATTGAATCAATGGTGCAGGACAGAAAGC
CAGTCAGACTAATTTCCTTCTCTCCTTGCACTTGTCCTCACTCGTCATCTTTTAACCAGT
CTTTCACAAGGATCCTCTGAAACCCCCTCTGTGCCCCAAGCACAGCCCCCATTACTTCTG
CTTTTGCGTCTCTTCAGGCAGAAGTGGAGGGTGCCTTTTGGACCCTCCTTGTAGGCTGTC
TCTTCATACACGAACCAAACCCAAATTTGCTTTGGTGCCAGAAAAACTGAGCTTTGTTCA
ACAAAGGATATCAACACAAACTATCATAAATAGCAGCTTGCTTATCATTTCAGGGGCAGG
GAGGAGGGTGCATTTAAAAGCCTGATGACTCTAGAGCCAAATTAAGGGAAGTTTTCAGAT
CAAAAATTGGTTACCATTTGTCAGTGTCTGATGCAGCCACTCATGGCTCTAAGAATTCCC
GAGCTGGGTGAACGGGGTTGTATTGTGAATGGCTCACTACAAAATGACTTGAGTCCAGTG
AAATCCCATTAGGGTTAGGAATATTTCAGGGATCCTTAATTTTTTGATTTTTGTTTTCTA
AAATTGGATTTTATTTTATTTTAAGTTTAAGTTCATCTAAATTTTGTGTTCTGTACATGT
GATGTTTGACTGTACCATTGACTGTTATGGAAGTTCAGCGTTGTATGTCTCTCTCTACAC
TGTGGTGCACTTAACTTGTGGATTTTTTATACTAAAAATGTAGAATAAAGACTATTTTGA
AGATTTGAATAAAGTGATGAAGTTGCATTACACCTCAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
93-213, gnl|bosTau2|chr5 (20711391-20711271) |
|
93-213, gnl|canFam2|chr27 (6625196-6625032) |
|
93-213, gnl|danRer3|chrNA (733463-733608) |
|
93-213, gnl|dasNov1|scaffold_34087 (4115-3952) |
|
93-213, gnl|echTel1|scaffold_318126 (8948-9114) |
|
93-213, gnl|fr1|chrUn (277665875-277666011) |
|
93-213, gnl|hg17|chr12 (49920374-49920538) |
|
93-213, gnl|Hg17|chr12 (49920392-49920512) |
|
93-213, gnl|loxAfr1|scaffold_56621 (11302-11139) |
|
93-213, gnl|mm7|chr15 (100602138-100602302) |
|
93-213, gnl|Mm7|chr15 (100602156-100602276) |
|
93-213, gnl|oryCun1|scaffold_178800 (13706-13588) |
|
93-213, gnl|panTro1|chr10 (51143087-51143251) |
|
93-213, gnl|rheMac2|chr11 (48390006-48390170) |
|
93-213, gnl|rn3|chr7 (139439857-139440021) |
|
93-213, gnl|xenTro1|scaffold_34 (1596950-1596787) |
| |
|
238-353, gnl|bosTau2|chr25 (23783231-23783345) |
|
238-353, gnl|Hg17|chr12 (49920946-49921098) |
|
238-353, gnl|Mm7|chr15 (100603194-100603346) |
| |
|
390-1195, gnl|bosTau2|chr25 (23783345-23784146) |
|
390-1195, gnl|Hg17|chr12 (49921098-49923100) |
|
390-1195, gnl|Mm7|chr15 (100603346-100605322) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
93-213, gnl|bosTau2|chr5 (20711391-20711271) |
|
93-213, gnl|canFam2|chr27 (6625196-6625032) |
|
93-213, gnl|danRer3|chrNA (733463-733608) |
|
93-213, gnl|dasNov1|scaffold_34087 (4115-3952) |
|
93-213, gnl|echTel1|scaffold_318126 (8948-9114) |
|
93-213, gnl|fr1|chrUn (277665875-277666011) |
|
93-213, gnl|hg17|chr12 (49920374-49920538) |
|
93-213, gnl|Hg17|chr12 (49920392-49920512) |
|
93-213, gnl|loxAfr1|scaffold_56621 (11302-11139) |
|
93-213, gnl|mm7|chr15 (100602138-100602302) |
|
93-213, gnl|Mm7|chr15 (100602156-100602276) |
|
93-213, gnl|oryCun1|scaffold_178800 (13706-13588) |
|
93-213, gnl|panTro1|chr10 (51143087-51143251) |
|
93-213, gnl|rheMac2|chr11 (48390006-48390170) |
|
93-213, gnl|rn3|chr7 (139439857-139440021) |
|
93-213, gnl|xenTro1|scaffold_34 (1596950-1596787) |
| |
|
238-353, gnl|bosTau2|chr25 (23783231-23783345) |
|
238-353, gnl|Hg17|chr12 (49920946-49921098) |
|
238-353, gnl|Mm7|chr15 (100603194-100603346) |
| |
|
390-1195, gnl|bosTau2|chr25 (23783345-23784146) |
|
390-1195, gnl|Hg17|chr12 (49921098-49923100) |
|
390-1195, gnl|Mm7|chr15 (100603346-100605322) |
|
cbl (1.72196) |
|
cty (0.936719) |
|
nje (0.8296) |
|
lnt (0.711541) |
|
jej (0.692452) |
|
cov (0.660764) |
|
csp (0.644745) |
|
hyp (0.571347) |
|
fty (0.527519) |
|
sin (0.524843) |
|
rec (0.519211) |
|
pro (0.512033) |
|
eye (0.511509) |
|
thg (0.507164) |
|
eje (0.494169) |
|
med (0.465008) |
|
tes (0.415628) |
|
cmu (0.372787) |
|
cly (0.361925) |
|
ebs (0.354904) |
|
fbs (0.350693) |
|
spc (0.340097) |
|
cut (0.339847) |
|
cje (0.330469) |
|
fco (0.314416) |
|
cag (0.302389) |
|
cte (0.29274) |
|
csk (0.281492) |
|
cga (0.279096) |
|
ste (0.270416) |
|
pla (0.267344) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ova (0.258264) |
|
ese (0.253004) |
|
bla (0.248694) |
|
eep (0.245128) |
|
clu (0.239292) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
fli (0.202881) |
|
nbm (0.198649) |
|
aor (0.195274) |
|
col (0.195008) |
|
ldo (0.194005) |
|
nep (0.183925) |
|
ill (0.175593) |
|
ton (0.1755) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
eli (0.151814) |
|
fat (0.147427) |
|
ski (0.146735) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ret (0.128733) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
cbl (1.72196) |
|
cty (0.936719) |
|
nje (0.8296) |
|
lnt (0.711541) |
|
jej (0.692452) |
|
cov (0.660764) |
|
csp (0.644745) |
|
hyp (0.571347) |
|
fty (0.527519) |
|
sin (0.524843) |
|
rec (0.519211) |
|
pro (0.512033) |
|
eye (0.511509) |
|
thg (0.507164) |
|
eje (0.494169) |
|
med (0.465008) |
|
tes (0.415628) |
|
cmu (0.372787) |
|
cly (0.361925) |
|
ebs (0.354904) |
|
fbs (0.350693) |
|
spc (0.340097) |
|
cut (0.339847) |
|
cje (0.330469) |
|
fco (0.314416) |
|
cag (0.302389) |
|
cte (0.29274) |
|
csk (0.281492) |
|
cga (0.279096) |
|
ste (0.270416) |
|
pla (0.267344) |
|
lyg (0.266205) |
|
kid (0.259471) |
|
ova (0.258264) |
|
ese (0.253004) |
|
bla (0.248694) |
|
eep (0.245128) |
|
clu (0.239292) |
|
mgp (0.230681) |
|
ecc (0.23007) |
|
fli (0.202881) |
|
nbm (0.198649) |
|
aor (0.195274) |
|
col (0.195008) |
|
ldo (0.194005) |
|
nep (0.183925) |
|
ill (0.175593) |
|
ton (0.1755) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
eli (0.151814) |
|
fat (0.147427) |
|
ski (0.146735) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ret (0.128733) |
|
pgl (0.118483) |
|
jca (0.11396) |
