Non-Coding RNA Search

Ss1.1-Thy1-THY010072F08.5

Sequence:


               
               TCTTTTCCGGTCGGCGTGGTTTGGGAGGTGCTCGTTCGCGGTGCCCCGGTCTTCACCATG
AGCGTCCCGGCGTTCATCGACATCAGCGAGGAAGATCAGGCTGCTGAACTTCGAGCTTAT
TTGAAATCTAAAGGAGCTGAAATTTCAGAAGAGAACTCAGAAGGTGGACTTCATGTAGAT
TTAGCTCAAATTATTGAAGCCTGTGATGTATGTCTGAAGGAAGATGATAAAGATGTTGAA
AGTGTGATGAACAGCGTGGTATCCCTCCTGTTGATCCTGGAACCAGATAAGCAAGAAGCT
CTGATTGAGAGCCTGTGTGAGAAACTGGTCAAATTTCGGGAAGGTGAACGCCCATCTCTG
AGACTACAGTTGCTTAGCAACCTTTTTCATGGGATGGATAAGAATACTCCTGTAAGATAC
ACAGTATATTGCAGCCTCATTAAAGTGGCAGCATCTTGTGGGGCCATCCAGTATATTCCA
ACTGAGCTGGATCAAGTTAGAAAATGGATTTCTGACTGGAACCTCAACACTGAGAAAAAA
CACACCCTTTTAAGGCTACTTTATGAGGCACTTGTAGATTGTAAGAAAAGTGATGCTGCA
TCAAAAGTCATGGTGGAATTGCTAGGAAGTTACACAGAGGACAATGCTTCCCAGGCTCGA
GTTGATGCTCACAGGTGTATTGTGCGAGCATTGAAAGATCCAAATGCATTTCTTTTTGAC
CACCTTCTTACTTTGAAACCAGTCAAGTTTTTGGAAGGCGAGCTTATTCATGATCTTTTA
ACCATTTTTGTGAGTGCTAAGTTGGCATCATATGTCAAGTTTTATCAGAATAATAAAGAC
TTCATTGATTCACTTGGCCTACTACATGAACAGAATATGGCAAAAATGAGGCTACTCACT
TTTATGGGAATGGCAGTGGAAAATAAAGAAATTTCTTTTGACACAATGCAACAAGAACTT
CAGATTGGAGCTGATGATGTTGAAGCATTTGTTATTGATGCGGTGAGAACTAAAATGGTC
TACTGCAAAATTGATCAAACCCAGAGAAAAGTAGTTGTCAGTCATAGCACACATCGGACA
TTTGGAAAACAACAATGGCAACAACTGTATGACACACTTAATGCCTGGAAACAAAACCTG
AACAAAGTGAAAAACAGCCTTTTGAGTCTTTCTGATACCTGAATTTTTATGCTATATAAT
TTTGTTCTTTTTGGAAAAAAAATCTAAATCACAGTAAAACATTATAGACTGAAATCTGAC
TATAGTCTGGACATTTATTGTCGCAACTTTAAAAGAAATTGAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTTCCGGTCGGCGTGGTTTGGGAGGTGCTCGTTCGCGGTGCCCCGGTCTTCACCATG
AGCGTCCCGGCGTTCATCGACATCAGCGAGGAAGATCAGGCTGCTGAACTTCGAGCTTAT
TTGAAATCTAAAGGAGCTGAAATTTCAGAAGAGAACTCAGAAGGTGGACTTCATGTAGAT
TTAGCTCAAATTATTGAAGCCTGTGATGTATGTCTGAAGGAAGATGATAAAGATGTTGAA
AGTGTGATGAACAGCGTGGTATCCCTCCTGTTGATCCTGGAACCAGATAAGCAAGAAGCT
CTGATTGAGAGCCTGTGTGAGAAACTGGTCAAATTTCGGGAAGGTGAACGCCCATCTCTG
AGACTACAGTTGCTTAGCAACCTTTTTCATGGGATGGATAAGAATACTCCTGTAAGATAC
ACAGTATATTGCAGCCTCATTAAAGTGGCAGCATCTTGTGGGGCCATCCAGTATATTCCA
ACTGAGCTGGATCAAGTTAGAAAATGGATTTCTGACTGGAACCTCAACACTGAGAAAAAA
CACACCCTTTTAAGGCTACTTTATGAGGCACTTGTAGATTGTAAGAAAAGTGATGCTGCA
TCAAAAGTCATGGTGGAATTGCTAGGAAGTTACACAGAGGACAATGCTTCCCAGGCTCGA
GTTGATGCTCACAGGTGTATTGTGCGAGCATTGAAAGATCCAAATGCATTTCTTTTTGAC
CACCTTCTTACTTTGAAACCAGTCAAGTTTTTGGAAGGCGAGCTTATTCATGATCTTTTA
ACCATTTTTGTGAGTGCTAAGTTGGCATCATATGTCAAGTTTTATCAGAATAATAAAGAC
TTCATTGATTCACTTGGCCTACTACATGAACAGAATATGGCAAAAATGAGGCTACTCACT
TTTATGGGAATGGCAGTGGAAAATAAAGAAATTTCTTTTGACACAATGCAACAAGAACTT
CAGATTGGAGCTGATGATGTTGAAGCATTTGTTATTGATGCGGTGAGAACTAAAATGGTC
TACTGCAAAATTGATCAAACCCAGAGAAAAGTAGTTGTCAGTCATAGCACACATCGGACA
TTTGGAAAACAACAATGGCAACAACTGTATGACACACTTAATGCCTGGAAACAAAACCTG
AACAAAGTGAAAAACAGCCTTTTGAGTCTTTCTGATACCTGAATTTTTATGCTATATAAT
TTTGTTCTTTTTGGAAAAAAAATCTAAATCACAGTAAAACATTATAGACTGAAATCTGAC
TATAGTCTGGACATTTATTGTCGCAACTTTAAAAGAAATTGAAAAGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5EBI5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EBI5_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1259, gnl|bosTau2|chr2 (13713384-13714621)
               

               
               3-1259, gnl|Hg17|chr11 (32565131-32580590)
               

               
               3-1259, gnl|Mm7|chr1 (21707782-21706536)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1259, gnl|bosTau2|chr2 (13713384-13714621)
               

               
               3-1259, gnl|Hg17|chr11 (32565131-32580590)
               

               
               3-1259, gnl|Mm7|chr1 (21707782-21706536)

Expressed library(ies): 54 entry(ies)

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Expressed library(ies): 54 entry(ies)

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               ova (1.16219)
               

               
               isp (0.902256)
               

               
               liv (0.731422)
               

               
               lin (0.728014)
               

               
               spl (0.715922)
               

               
               sug (0.636456)
               

               
               sme (0.610874)
               

               
               nlu (0.575043)
               

               
               ret (0.514933)
               

               
               mga (0.480615)
               

               
               ece (0.45861)
               

               
               hea (0.408998)
               

               
               fli (0.405762)
               

               
               lyg (0.399308)
               

               
               nmm (0.398406)
               

               
               kid (0.389206)
               

               
               sag (0.36543)
               

               
               tbr (0.308356)
               

               
               ctl (0.306138)
               

               
               ldo (0.291008)
               

               
               lnt (0.284616)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 54 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (1.16219)
               

               
               isp (0.902256)
               

               
               liv (0.731422)
               

               
               lin (0.728014)
               

               
               spl (0.715922)
               

               
               sug (0.636456)
               

               
               sme (0.610874)
               

               
               nlu (0.575043)
               

               
               ret (0.514933)
               

               
               mga (0.480615)
               

               
               ece (0.45861)
               

               
               hea (0.408998)
               

               
               fli (0.405762)
               

               
               lyg (0.399308)
               

               
               nmm (0.398406)
               

               
               kid (0.389206)
               

               
               sag (0.36543)
               

               
               tbr (0.308356)
               

               
               ctl (0.306138)
               

               
               ldo (0.291008)
               

               
               lnt (0.284616)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	3-1259, gnl\|bosTau2\|chr2 (13713384-13714621)
	3-1259, gnl\|Hg17\|chr11 (32565131-32580590)
	3-1259, gnl\|Mm7\|chr1 (21707782-21706536)

	ova (1.16219)
	isp (0.902256)
	liv (0.731422)
	lin (0.728014)
	spl (0.715922)
	sug (0.636456)
	sme (0.610874)
	nlu (0.575043)
	ret (0.514933)
	mga (0.480615)
	ece (0.45861)
	hea (0.408998)
	fli (0.405762)
	lyg (0.399308)
	nmm (0.398406)
	kid (0.389206)
	sag (0.36543)
	tbr (0.308356)
	ctl (0.306138)
	ldo (0.291008)
	lnt (0.284616)
	ese (0.253004)
	tra (0.246184)
	cly (0.241284)
	mgp (0.230681)
	cbl (0.229595)
	nms (0.213858)
	mas (0.210305)
	nbm (0.198649)
	aor (0.195274)
	gul (0.177588)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	mcp (0.170648)
	cut (0.169924)
	nje (0.16592)
	fco (0.157208)
	eli (0.151814)
	cag (0.151194)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	csk (0.140746)
	cst (0.140036)
	ste (0.135208)
	pla (0.133672)
	bla (0.124347)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)