Ss1.1-Thy1-THY010074D05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGAGTGTGTGACTGGTGGCCGTGCCGCGCTGTCCGCGTTCTCTCTTCCCGGTGTGACC AAGCAGCAGTGCCCACTGGCGAAGAGTACCCGCTGCCTGGAGAAGAGAAGGACGAGGAGG GGACTTGGGAGAGGGCTGTGGCCGGGCTGGGCCGCTCTGGGTTGGGCCGGCGACTCTGCT CCTTCGTTTGCTGCTGTCTCTGGGAGCCGGGTGCCAGCACTGAGGCGTCTTAAGTGGACA GCGACCCCCTTCCCCGGCTCCCCTGCCCGCCCTGCCGGGGAGGGCGGAAGATGCCGGTGA AGAAGAAGAGGAAATCCTCTGGGGTGGCAGCTGCAGTAGCGGAAGACGGAAGCCTCAAAA AGTGTAAAATCTCCAGCTATTGCAGATCCCAACCCCCTGCTAGACTAATAAGTGGAGAGG AACATTTTTCAAGCAAGAAGTGCCTGGCTTGGTTTTATGAGTATGCAGGTCCTGATGAAG TTGTAGGGCCAGAAGGAATGGAAAAATTTTGTGAAGACATTGGTGTTGAACCTGAAAATA TTATTATGTTAGTTTTAGCGTGGAAATTGGAGGCTGAAAGCATGGGATTTTTTACCAAGG AAGAATGGTTAAAGGGGATGACTTCATTACAATGTGACTGCACAGAAAAGTTACAGAACA AATTTGACTTTCTGCGCTCACAGTTGAATGACATTTCTTCATTTAAGAATATCTACAGAT ATGCCTTTGATTTTGCAAGGGACAAAGATCAGAGAAGCCTTGATATTGATACTGCTAAGT CTATGTTAGCTCTTCTGCTTGGGAGGACATGGCCACTGTTTTCAGTATTTTACCAGTACC TGGAGCAATCAAAGTATCGTGTTATGAACAAAGATCAGTGGTACAATGTATTAGAATTCA GCAGAACTGTCCACGCCGATCTTAGTAACTATGATGAAGATGGTGCTTGGCCTGTTCTTC TTGATGAATTTGTTGAGTGGCAGAAAGTTCGTCAAACATCATAGCAAGAACTGTTGTGAA GAAAATGCAAACCTTTTGATCCCCACGCATGTACAAGCTAATGAAATTGTGAAGAAAATG CAAACCTTTTGATCTCCACGTGTGAACAAGCTAATGAGATGAGGAAAAAAAAATCTAAAG GGTGCATTTTTATTCATATGAAAGACTTCTCATAGTACTTTTTTTTTCCTTTTTTTTAAA GGAAGTTTTCTTGTTACATGTGATGGGTATTGAGCCACACCTCTTCTGAGACTGAATATT GAAGTTTTTGTTTTGAGTTATGTTTATAACATTTATTTCAGAACAATAAAGATTCAGATT TGTGACAAAGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGAGTGTGTGACTGGTGGCCGTGCCGCGCTGTCCGCGTTCTCTCTTCCCGGTGTGACC AAGCAGCAGTGCCCACTGGCGAAGAGTACCCGCTGCCTGGAGAAGAGAAGGACGAGGAGG GGACTTGGGAGAGGGCTGTGGCCGGGCTGGGCCGCTCTGGGTTGGGCCGGCGACTCTGCT CCTTCGTTTGCTGCTGTCTCTGGGAGCCGGGTGCCAGCACTGAGGCGTCTTAAGTGGACA GCGACCCCCTTCCCCGGCTCCCCTGCCCGCCCTGCCGGGGAGGGCGGAAGATGCCGGTGA AGAAGAAGAGGAAATCCTCTGGGGTGGCAGCTGCAGTAGCGGAAGACGGAAGCCTCAAAA AGTGTAAAATCTCCAGCTATTGCAGATCCCAACCCCCTGCTAGACTAATAAGTGGAGAGG AACATTTTTCAAGCAAGAAGTGCCTGGCTTGGTTTTATGAGTATGCAGGTCCTGATGAAG TTGTAGGGCCAGAAGGAATGGAAAAATTTTGTGAAGACATTGGTGTTGAACCTGAAAATA TTATTATGTTAGTTTTAGCGTGGAAATTGGAGGCTGAAAGCATGGGATTTTTTACCAAGG AAGAATGGTTAAAGGGGATGACTTCATTACAATGTGACTGCACAGAAAAGTTACAGAACA AATTTGACTTTCTGCGCTCACAGTTGAATGACATTTCTTCATTTAAGAATATCTACAGAT ATGCCTTTGATTTTGCAAGGGACAAAGATCAGAGAAGCCTTGATATTGATACTGCTAAGT CTATGTTAGCTCTTCTGCTTGGGAGGACATGGCCACTGTTTTCAGTATTTTACCAGTACC TGGAGCAATCAAAGTATCGTGTTATGAACAAAGATCAGTGGTACAATGTATTAGAATTCA GCAGAACTGTCCACGCCGATCTTAGTAACTATGATGAAGATGGTGCTTGGCCTGTTCTTC TTGATGAATTTGTTGAGTGGCAGAAAGTTCGTCAAACATCATAGCAAGAACTGTTGTGAA GAAAATGCAAACCTTTTGATCCCCACGCATGTACAAGCTAATGAAATTGTGAAGAAAATG CAAACCTTTTGATCTCCACGTGTGAACAAGCTAATGAGATGAGGAAAAAAAAATCTAAAG GGTGCATTTTTATTCATATGAAAGACTTCTCATAGTACTTTTTTTTTCCTTTTTTTTAAA GGAAGTTTTCTTGTTACATGTGATGGGTATTGAGCCACACCTCTTCTGAGACTGAATATT GAAGTTTTTGTTTTGAGTTATGTTTATAACATTTATTTCAGAACAATAAAGATTCAGATT TGTGACAAAGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 201-1183, + strand, RNAz p=0.918125 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 201-1183, + strand, RNAz p=0.918125 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_032299, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 3-395, gnl|bosTau2|chr15 (615924-616310) | |
| 3-395, gnl|Hg17|chr11 (102468096-102467707) | |
| 3-395, gnl|Mm7|chr9 (7180217-7180564) | |
| 454-557, gnl|bosTau2|chr15 (623918-624019) | |
| 454-557, gnl|Hg17|chr11 (102459280-102459179) | |
| 454-557, gnl|Mm7|chr9 (7184394-7184495) | |
| 633-741, gnl|bosTau2|chr15 (638943-639051) | |
| 633-741, gnl|canFam2|chr5 (31771208-31771092) | |
| 633-741, gnl|danRer3|chr6 (10977234-10977118) | |
| 633-741, gnl|dasNov1|scaffold_1414 (125166-125050) | |
| 633-741, gnl|echTel1|scaffold_308211 (1815-1699) | |
| 633-741, gnl|fr1|chrUn (37568221-37568337) | |
| 633-741, gnl|galGal2|chr1 (174294731-174294615) | |
| 633-741, gnl|hg17|chr11 (102442393-102442509) | |
| 633-741, gnl|Hg17|chr11 (102442505-102442397) | |
| 633-741, gnl|loxAfr1|scaffold_72399 (12576-12692) | |
| 633-741, gnl|mm7|chr9 (7199895-7199779) | |
| 633-741, gnl|Mm7|chr9 (7199781-7199889) | |
| 633-741, gnl|monDom2|scaffold_65 (8359090-8359206) | |
| 633-741, gnl|oryCun1|scaffold_201856 (78615-78731) | |
| 633-741, gnl|panTro1|chr9 (104425232-104425348) | |
| 633-741, gnl|rheMac2|chr14 (101675219-101675335) | |
| 633-741, gnl|rn3|chr8 (4090423-4090307) | |
| 633-741, gnl|tetNig1|chr1_random (1867572-1867456) | |
| 633-741, gnl|xenTro1|scaffold_601 (712776-712892) | |
| 840-949, gnl|bosTau2|chr15 (642166-642275) | |
| 840-949, gnl|Hg17|chr11 (102440321-102440213) | |
| 840-949, gnl|Mm7|chr9 (7201809-7201918) | |
| 1066-1332, gnl|bosTau2|chr15 (644328-644601) | |
| 1066-1332, gnl|Hg17|chr11 (102438289-102438024) | |
| 1066-1332, gnl|Mm7|chr9 (7203301-7203548) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-395, gnl|bosTau2|chr15 (615924-616310) | |
| 3-395, gnl|Hg17|chr11 (102468096-102467707) | |
| 3-395, gnl|Mm7|chr9 (7180217-7180564) | |
| 454-557, gnl|bosTau2|chr15 (623918-624019) | |
| 454-557, gnl|Hg17|chr11 (102459280-102459179) | |
| 454-557, gnl|Mm7|chr9 (7184394-7184495) | |
| 633-741, gnl|bosTau2|chr15 (638943-639051) | |
| 633-741, gnl|canFam2|chr5 (31771208-31771092) | |
| 633-741, gnl|danRer3|chr6 (10977234-10977118) | |
| 633-741, gnl|dasNov1|scaffold_1414 (125166-125050) | |
| 633-741, gnl|echTel1|scaffold_308211 (1815-1699) | |
| 633-741, gnl|fr1|chrUn (37568221-37568337) | |
| 633-741, gnl|galGal2|chr1 (174294731-174294615) | |
| 633-741, gnl|hg17|chr11 (102442393-102442509) | |
| 633-741, gnl|Hg17|chr11 (102442505-102442397) | |
| 633-741, gnl|loxAfr1|scaffold_72399 (12576-12692) | |
| 633-741, gnl|mm7|chr9 (7199895-7199779) | |
| 633-741, gnl|Mm7|chr9 (7199781-7199889) | |
| 633-741, gnl|monDom2|scaffold_65 (8359090-8359206) | |
| 633-741, gnl|oryCun1|scaffold_201856 (78615-78731) | |
| 633-741, gnl|panTro1|chr9 (104425232-104425348) | |
| 633-741, gnl|rheMac2|chr14 (101675219-101675335) | |
| 633-741, gnl|rn3|chr8 (4090423-4090307) | |
| 633-741, gnl|tetNig1|chr1_random (1867572-1867456) | |
| 633-741, gnl|xenTro1|scaffold_601 (712776-712892) | |
| 840-949, gnl|bosTau2|chr15 (642166-642275) | |
| 840-949, gnl|Hg17|chr11 (102440321-102440213) | |
| 840-949, gnl|Mm7|chr9 (7201809-7201918) | |
| 1066-1332, gnl|bosTau2|chr15 (644328-644601) | |
| 1066-1332, gnl|Hg17|chr11 (102438289-102438024) | |
| 1066-1332, gnl|Mm7|chr9 (7203301-7203548) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| tbr (0.462535) | |
| sin (0.349895) | |
| kid (0.259471) | |
| mas (0.210305) | |
| fat (0.147427) | |
| ski (0.146735) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.462535) | |
| sin (0.349895) | |
| kid (0.259471) | |
| mas (0.210305) | |
| fat (0.147427) | |
| ski (0.146735) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) |