Ss1.1-Thy1-THY010074F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGCTGAGGCGGTAGGCGGTTGCCAGCCGTGTGGGTTCTCTTAAATTGCTCGCTGCGTAG CCAGTCAGCAGCGAACATGTCTAGCAGAAACAATAATAAGCTGCCCAGCAACCTGCCGCA GTTACAGAATCTTATCAAGCGGGACCCGCCGGCCTACATCGAGGAGTTTCTACAGCAGTA TAATCACTACAAATCCAATGTGGAGATTTTCAAATTACAACCAAATAAACCCAGCAAGGA ACTGGCAGAGCTGGTGATGTTTATGGCACAGATTGGTCACTGTTATCCAGAACATTTAAG TAACTTTCCTCAAGAACTGAAGGATCTTCTCTCCTACAACCACACTGTCCTGGATCCAGA TCTCCGAATGACATTTTGCAAAGCTTTGATCTTGCTGAGGAATAAGAATCTCATCAATCC ATCAAGTTTGCTAGAACTCTTCTTTGAACTTCTACGTTGCCACGATAAGCTCCTGCGCAA GACTTTGTATACTCACATTGTGACTGATATCAAAAATATAAATGCAAAACACAAGAACAA TAAAGTGAATATAGTTTTACAGAATTTCATGTATACCATGTTAAGAGACAGCAATGCAAC TGCAGCCAAGATATCTTTAGATGTGATGATTGAACTCTACAGAAGAAATATCTGGAATGA TGCCAAAACTGTCAATGTGATCACAACAGCATGTTTCTCTAAGGTCACCAAGATATTAGT TGCTGCTTTGACATTCTTCCTTGGGAAAGACGAAGAGGAGAAACAGGGCAGTGACTCAGA ATCTGAGGATGACACACCAACAGCAAGAGACCTGCTGGTGCAGTATGCCACAGGGAAGAA AAGCTCCAAAAACAAGAAGAAGTTAGAAAAGGCTATGAAAGTGCTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGCTGAGGCGGTAGGCGGTTGCCAGCCGTGTGGGTTCTCTTAAATTGCTCGCTGCGTAG CCAGTCAGCAGCGAACATGTCTAGCAGAAACAATAATAAGCTGCCCAGCAACCTGCCGCA GTTACAGAATCTTATCAAGCGGGACCCGCCGGCCTACATCGAGGAGTTTCTACAGCAGTA TAATCACTACAAATCCAATGTGGAGATTTTCAAATTACAACCAAATAAACCCAGCAAGGA ACTGGCAGAGCTGGTGATGTTTATGGCACAGATTGGTCACTGTTATCCAGAACATTTAAG TAACTTTCCTCAAGAACTGAAGGATCTTCTCTCCTACAACCACACTGTCCTGGATCCAGA TCTCCGAATGACATTTTGCAAAGCTTTGATCTTGCTGAGGAATAAGAATCTCATCAATCC ATCAAGTTTGCTAGAACTCTTCTTTGAACTTCTACGTTGCCACGATAAGCTCCTGCGCAA GACTTTGTATACTCACATTGTGACTGATATCAAAAATATAAATGCAAAACACAAGAACAA TAAAGTGAATATAGTTTTACAGAATTTCATGTATACCATGTTAAGAGACAGCAATGCAAC TGCAGCCAAGATATCTTTAGATGTGATGATTGAACTCTACAGAAGAAATATCTGGAATGA TGCCAAAACTGTCAATGTGATCACAACAGCATGTTTCTCTAAGGTCACCAAGATATTAGT TGCTGCTTTGACATTCTTCCTTGGGAAAGACGAAGAGGAGAAACAGGGCAGTGACTCAGA ATCTGAGGATGACACACCAACAGCAAGAGACCTGCTGGTGCAGTATGCCACAGGGAAGAA AAGCTCCAAAAACAAGAAGAAGTTAGAAAAGGCTATGAAAGTGCTCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 6-166, gnl|bosTau2|chr6 (50168544-50168705) | |
| 6-166, gnl|canFam2|chr32 (3502477-3502601) | |
| 6-166, gnl|danRer3|chrUn (110637613-110637711) | |
| 6-166, gnl|dasNov1|scaffold_176184 (1994-1871) | |
| 6-166, gnl|echTel1|scaffold_156064 (3345-3242) | |
| 6-166, gnl|fr1|chrUn (162248022-162248123) | |
| 6-166, gnl|galGal2|chr4 (50538716-50538848) | |
| 6-166, gnl|hg17|chr4 (77269077-77269202) | |
| 6-166, gnl|Hg17|chr4 (77269246-77269084) | |
| 6-166, gnl|loxAfr1|scaffold_185277 (1078-1181) | |
| 6-166, gnl|mm7|chr5 (92297032-92297157) | |
| 6-166, gnl|Mm7|chr5 (92297202-92297039) | |
| 6-166, gnl|monDom2|scaffold_32 (20785870-20785978) | |
| 6-166, gnl|oryCun1|scaffold_206477 (47720-47595) | |
| 6-166, gnl|panTro1|chr3 (56457393-56457268) | |
| 6-166, gnl|rheMac2|chr5 (53596006-53595881) | |
| 6-166, gnl|rn3|chr14 (17303117-17302992) | |
| 6-166, gnl|tetNig1|chr4 (3646807-3646710) | |
| 363-481, gnl|bosTau2|chr6 (50176284-50176401) | |
| 363-481, gnl|canFam2|chr32 (3498276-3498444) | |
| 363-481, gnl|danRer3|chrUn (110634571-110634733) | |
| 363-481, gnl|dasNov1|scaffold_157051 (3762-3604) | |
| 363-481, gnl|echTel1|scaffold_281396 (13114-13268) | |
| 363-481, gnl|fr1|chrUn (162247419-162247556) | |
| 363-481, gnl|galGal2|chr4 (50537963-50538107) | |
| 363-481, gnl|hg17|chr4 (77255969-77256134) | |
| 363-481, gnl|Hg17|chr4 (77256095-77255978) | |
| 363-481, gnl|loxAfr1|scaffold_10207 (88795-88959) | |
| 363-481, gnl|mm7|chr5 (92292211-92292371) | |
| 363-481, gnl|Mm7|chr5 (92292336-92292220) | |
| 363-481, gnl|monDom2|scaffold_32 (20781752-20781896) | |
| 363-481, gnl|oryCun1|scaffold_206477 (55578-55410) | |
| 363-481, gnl|panTro1|chr3 (56470599-56470434) | |
| 363-481, gnl|rheMac2|chr5 (53606609-53606445) | |
| 363-481, gnl|rn3|chr14 (17308687-17308526) | |
| 363-481, gnl|tetNig1|chr4 (3647413-3647269) | |
| 363-481, gnl|xenTro1|scaffold_757 (60367-60524) | |
| 554-655, gnl|bosTau2|chr6 (50178781-50178882) | |
| 554-655, gnl|canFam2|chr32 (3496500-3496631) | |
| 554-655, gnl|danRer3|chrUn (110633376-110633497) | |
| 554-655, gnl|dasNov1|scaffold_4230 (77829-77922) | |
| 554-655, gnl|echTel1|scaffold_281396 (11573-11704) | |
| 554-655, gnl|fr1|chrUn (162247047-162247167) | |
| 554-655, gnl|galGal2|chr4 (50536954-50537076) | |
| 554-655, gnl|hg17|chr4 (77254065-77254194) | |
| 554-655, gnl|Hg17|chr4 (77254176-77254075) | |
| 554-655, gnl|loxAfr1|scaffold_10207 (86733-86862) | |
| 554-655, gnl|mm7|chr5 (92290899-92291031) | |
| 554-655, gnl|Mm7|chr5 (92291013-92290912) | |
| 554-655, gnl|monDom2|scaffold_32 (20781382-20781524) | |
| 554-655, gnl|oryCun1|scaffold_206477 (56264-56126) | |
| 554-655, gnl|panTro1|chr3 (56472502-56472373) | |
| 554-655, gnl|rheMac2|chr5 (53609509-53609380) | |
| 554-655, gnl|rn3|chr14 (17310696-17310565) | |
| 554-655, gnl|tetNig1|chr4 (3647791-3647674) | |
| 554-655, gnl|xenTro1|scaffold_757 (59230-59363) | |
| 786-887, gnl|bosTau2|chr6 (50182448-50182549) | |
| 786-887, gnl|canFam2|chr12 (31603434-31603534) | |
| 786-887, gnl|danRer3|chrUn (110630829-110630943) | |
| 786-887, gnl|dasNov1|scaffold_44800 (1546-1455) | |
| 786-887, gnl|echTel1|scaffold_281396 (6357-6469) | |
| 786-887, gnl|fr1|chrUn (162246539-162246653) | |
| 786-887, gnl|galGal2|chr4 (50534577-50534677) | |
| 786-887, gnl|hg17|chr4 (77249690-77249804) | |
| 786-887, gnl|Hg17|chr4 (77249792-77249691) | |
| 786-887, gnl|loxAfr1|scaffold_10207 (83612-83726) | |
| 786-887, gnl|mm7|chr5 (92287310-92287424) | |
| 786-887, gnl|Mm7|chr5 (92287412-92287311) | |
| 786-887, gnl|monDom2|scaffold_32 (20777515-20777629) | |
| 786-887, gnl|oryCun1|scaffold_212244 (128359-128476) | |
| 786-887, gnl|panTro1|chr3 (56476841-56476727) | |
| 786-887, gnl|rheMac2|chr5 (53613601-53613487) | |
| 786-887, gnl|rn3|chr14 (17314215-17314101) | |
| 786-887, gnl|tetNig1|chr4 (3648306-3648197) | |
| 786-887, gnl|xenTro1|scaffold_757 (57855-57955) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-166, gnl|bosTau2|chr6 (50168544-50168705) | |
| 6-166, gnl|canFam2|chr32 (3502477-3502601) | |
| 6-166, gnl|danRer3|chrUn (110637613-110637711) | |
| 6-166, gnl|dasNov1|scaffold_176184 (1994-1871) | |
| 6-166, gnl|echTel1|scaffold_156064 (3345-3242) | |
| 6-166, gnl|fr1|chrUn (162248022-162248123) | |
| 6-166, gnl|galGal2|chr4 (50538716-50538848) | |
| 6-166, gnl|hg17|chr4 (77269077-77269202) | |
| 6-166, gnl|Hg17|chr4 (77269246-77269084) | |
| 6-166, gnl|loxAfr1|scaffold_185277 (1078-1181) | |
| 6-166, gnl|mm7|chr5 (92297032-92297157) | |
| 6-166, gnl|Mm7|chr5 (92297202-92297039) | |
| 6-166, gnl|monDom2|scaffold_32 (20785870-20785978) | |
| 6-166, gnl|oryCun1|scaffold_206477 (47720-47595) | |
| 6-166, gnl|panTro1|chr3 (56457393-56457268) | |
| 6-166, gnl|rheMac2|chr5 (53596006-53595881) | |
| 6-166, gnl|rn3|chr14 (17303117-17302992) | |
| 6-166, gnl|tetNig1|chr4 (3646807-3646710) | |
| 363-481, gnl|bosTau2|chr6 (50176284-50176401) | |
| 363-481, gnl|canFam2|chr32 (3498276-3498444) | |
| 363-481, gnl|danRer3|chrUn (110634571-110634733) | |
| 363-481, gnl|dasNov1|scaffold_157051 (3762-3604) | |
| 363-481, gnl|echTel1|scaffold_281396 (13114-13268) | |
| 363-481, gnl|fr1|chrUn (162247419-162247556) | |
| 363-481, gnl|galGal2|chr4 (50537963-50538107) | |
| 363-481, gnl|hg17|chr4 (77255969-77256134) | |
| 363-481, gnl|Hg17|chr4 (77256095-77255978) | |
| 363-481, gnl|loxAfr1|scaffold_10207 (88795-88959) | |
| 363-481, gnl|mm7|chr5 (92292211-92292371) | |
| 363-481, gnl|Mm7|chr5 (92292336-92292220) | |
| 363-481, gnl|monDom2|scaffold_32 (20781752-20781896) | |
| 363-481, gnl|oryCun1|scaffold_206477 (55578-55410) | |
| 363-481, gnl|panTro1|chr3 (56470599-56470434) | |
| 363-481, gnl|rheMac2|chr5 (53606609-53606445) | |
| 363-481, gnl|rn3|chr14 (17308687-17308526) | |
| 363-481, gnl|tetNig1|chr4 (3647413-3647269) | |
| 363-481, gnl|xenTro1|scaffold_757 (60367-60524) | |
| 554-655, gnl|bosTau2|chr6 (50178781-50178882) | |
| 554-655, gnl|canFam2|chr32 (3496500-3496631) | |
| 554-655, gnl|danRer3|chrUn (110633376-110633497) | |
| 554-655, gnl|dasNov1|scaffold_4230 (77829-77922) | |
| 554-655, gnl|echTel1|scaffold_281396 (11573-11704) | |
| 554-655, gnl|fr1|chrUn (162247047-162247167) | |
| 554-655, gnl|galGal2|chr4 (50536954-50537076) | |
| 554-655, gnl|hg17|chr4 (77254065-77254194) | |
| 554-655, gnl|Hg17|chr4 (77254176-77254075) | |
| 554-655, gnl|loxAfr1|scaffold_10207 (86733-86862) | |
| 554-655, gnl|mm7|chr5 (92290899-92291031) | |
| 554-655, gnl|Mm7|chr5 (92291013-92290912) | |
| 554-655, gnl|monDom2|scaffold_32 (20781382-20781524) | |
| 554-655, gnl|oryCun1|scaffold_206477 (56264-56126) | |
| 554-655, gnl|panTro1|chr3 (56472502-56472373) | |
| 554-655, gnl|rheMac2|chr5 (53609509-53609380) | |
| 554-655, gnl|rn3|chr14 (17310696-17310565) | |
| 554-655, gnl|tetNig1|chr4 (3647791-3647674) | |
| 554-655, gnl|xenTro1|scaffold_757 (59230-59363) | |
| 786-887, gnl|bosTau2|chr6 (50182448-50182549) | |
| 786-887, gnl|canFam2|chr12 (31603434-31603534) | |
| 786-887, gnl|danRer3|chrUn (110630829-110630943) | |
| 786-887, gnl|dasNov1|scaffold_44800 (1546-1455) | |
| 786-887, gnl|echTel1|scaffold_281396 (6357-6469) | |
| 786-887, gnl|fr1|chrUn (162246539-162246653) | |
| 786-887, gnl|galGal2|chr4 (50534577-50534677) | |
| 786-887, gnl|hg17|chr4 (77249690-77249804) | |
| 786-887, gnl|Hg17|chr4 (77249792-77249691) | |
| 786-887, gnl|loxAfr1|scaffold_10207 (83612-83726) | |
| 786-887, gnl|mm7|chr5 (92287310-92287424) | |
| 786-887, gnl|Mm7|chr5 (92287412-92287311) | |
| 786-887, gnl|monDom2|scaffold_32 (20777515-20777629) | |
| 786-887, gnl|oryCun1|scaffold_212244 (128359-128476) | |
| 786-887, gnl|panTro1|chr3 (56476841-56476727) | |
| 786-887, gnl|rheMac2|chr5 (53613601-53613487) | |
| 786-887, gnl|rn3|chr14 (17314215-17314101) | |
| 786-887, gnl|tetNig1|chr4 (3648306-3648197) | |
| 786-887, gnl|xenTro1|scaffold_757 (57855-57955) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| sag (0.182715) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| ese (0.126502) | |
| cbl (0.114797) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.182715) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| ese (0.126502) | |
| cbl (0.114797) |