Non-Coding RNA Search

Ss1.1-Thy1-THY010074G07.5.5

Sequence:


               
               CTTGAACCTGCCCGTGGTCCCTGCAAGTGGGGCGTCTTTCTGCATGTGAGCCAGCCCCTT
CCCTGTTAGAGGGTTCTACTGGGGGCTGGGATTGGTCTAGGATACCTTTAGAAAAACTGT
CCTTTCACGAGTGCTTTGGAAAATGGGAAGCTTCCCTCCCTGCCACCTGTGGCTAACCTG
TCTAGAGTTGAGATGGGTTTGGGGGAATGCGTGGAGAATCACGTGAGTGCTCTGTGCCCC
TGCGTGTGCGAATATGTGCTTAGGTCAAAATGTGCTCTGGCCCCCTACAGGCCTCTGCTT
CCTGCCTGGGTGGACAGGAGAGAGAGAACTTCAAAGCATATGTGCAAAGAGCCATACCAG
AACCACCCCTGCCAAGGACTGGGTGCGGGGAAACTCAGGAGCAGGTGGTTAGCTCAGTTG
TCCAGGTGCTGATGTTCTGGGGTCATGACTATGCGAGGAGAGAGGAGCAGAGAGGCAAAA
GGAGTGACTTAGTGCCCAGGGGGCTTAGGAGTCCCACTTAACACCCCAGGGAAATCGCAG
ACTGAGACCGCTGCGAAGGCTCCTGGGTCCGATGTCCCACCCCTCCTCTGCTGGGGCAGG
GGTGGGGGGTTCTAGCACTGGAAAGAAGCCTCAGGTGTGTCCGGAGTGGAGGGAAAGGGA
AACAGGGCCGGCTCTCGGAGATGGGATGTGGGATTCAGGGACCTGGGAAAAAGTAGCGCC
AGTTCCTGGGTGGGCTGCTGTACCAGGCCCCACCAGCCCTGCCCTTCCCAGCACCCCCAG
TCTTTTCCGTCCGCCCCCCCCCCCCAACAGCCTCTTGTTGTCACTTAGCTACTGATTGTG
CCCCATGGCTTGATTTTGGAGGGTTAAATGAGGTGTGGTGTGGAGTCCCCCACAACTTTT
AACCCTCTCCCCAGATGTTCTTTGCCTCTGTGTGGCCCTGGGGCTTTTATCTTAACAATC
CCTCCTACCCTTCTTCTCTTTTTTTTTAATATACTTATTTTGCTATTGGGGGAGGGGAAT
ATTAAATGAACAAGATCACTTTTAAATGGTAGTTTTTATAAGATGTTATAAACTTGTATC
TTTTTACCATTAAAGTGCAGTGTATGTTCCTTCGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAACCTGCCCGTGGTCCCTGCAAGTGGGGCGTCTTTCTGCATGTGAGCCAGCCCCTT
CCCTGTTAGAGGGTTCTACTGGGGGCTGGGATTGGTCTAGGATACCTTTAGAAAAACTGT
CCTTTCACGAGTGCTTTGGAAAATGGGAAGCTTCCCTCCCTGCCACCTGTGGCTAACCTG
TCTAGAGTTGAGATGGGTTTGGGGGAATGCGTGGAGAATCACGTGAGTGCTCTGTGCCCC
TGCGTGTGCGAATATGTGCTTAGGTCAAAATGTGCTCTGGCCCCCTACAGGCCTCTGCTT
CCTGCCTGGGTGGACAGGAGAGAGAGAACTTCAAAGCATATGTGCAAAGAGCCATACCAG
AACCACCCCTGCCAAGGACTGGGTGCGGGGAAACTCAGGAGCAGGTGGTTAGCTCAGTTG
TCCAGGTGCTGATGTTCTGGGGTCATGACTATGCGAGGAGAGAGGAGCAGAGAGGCAAAA
GGAGTGACTTAGTGCCCAGGGGGCTTAGGAGTCCCACTTAACACCCCAGGGAAATCGCAG
ACTGAGACCGCTGCGAAGGCTCCTGGGTCCGATGTCCCACCCCTCCTCTGCTGGGGCAGG
GGTGGGGGGTTCTAGCACTGGAAAGAAGCCTCAGGTGTGTCCGGAGTGGAGGGAAAGGGA
AACAGGGCCGGCTCTCGGAGATGGGATGTGGGATTCAGGGACCTGGGAAAAAGTAGCGCC
AGTTCCTGGGTGGGCTGCTGTACCAGGCCCCACCAGCCCTGCCCTTCCCAGCACCCCCAG
TCTTTTCCGTCCGCCCCCCCCCCCCAACAGCCTCTTGTTGTCACTTAGCTACTGATTGTG
CCCCATGGCTTGATTTTGGAGGGTTAAATGAGGTGTGGTGTGGAGTCCCCCACAACTTTT
AACCCTCTCCCCAGATGTTCTTTGCCTCTGTGTGGCCCTGGGGCTTTTATCTTAACAATC
CCTCCTACCCTTCTTCTCTTTTTTTTTAATATACTTATTTTGCTATTGGGGGAGGGGAAT
ATTAAATGAACAAGATCACTTTTAAATGGTAGTTTTTATAAGATGTTATAAACTTGTATC
TTTTTACCATTAAAGTGCAGTGTATGTTCCTTCGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               821-977, - strand, RNAz p=0.95434

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               821-977, - strand, RNAz p=0.95434

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               931-981, + strand, RNAmicro p=0.99924

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               931-981, + strand, RNAmicro p=0.99924

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-1116, gnl|bosTau2|chr5 (19224679-19223617)
               

               
               15-1116, gnl|Hg17|chr12 (51869726-51870870)
               

               
               15-1116, gnl|Mm7|chr15 (102200737-102201714)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1116, gnl|bosTau2|chr5 (19224679-19223617)
               

               
               15-1116, gnl|Hg17|chr12 (51869726-51870870)
               

               
               15-1116, gnl|Mm7|chr15 (102200737-102201714)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fli (0.202881)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	15-1116, gnl\|bosTau2\|chr5 (19224679-19223617)
	15-1116, gnl\|Hg17\|chr12 (51869726-51870870)
	15-1116, gnl\|Mm7\|chr15 (102200737-102201714)