Ss1.1-Thy1-THY010074H01.5
|
CTCCAGCTTCAGCCGTCTCTGCCGCAGCCCCATCTCTTCGTCCAGGGCGCTCCTTCGCAG
AGCTGAGAATGTTCTCGGAACTCAGTAACCTTCTCAACACCAGTCCTGACAAGGTGGAGC
AGGGGAAACTGACTCTACTCTGTGATGTCAAGACTGATGGCAGTTTCCTTGTGCATCACT
TTCTCTCCTTCTACCTCAAAGCTCATTGTAAAGTCTGCTTTGTGGCACTCACTCAGTCCT
TCAGTCACTACAATATCGTGGGACAGAAGCTGGGGGTCAGTCTGACCATAGCACGGGAAC
GCGGGCAGCTTGTGTTTCTTGAGGGCCTCAAGTCTGCCATGGACATCTTCTTCCGGCCTC
AGGAGGAGCCACACCCGCTGCAGTTCCTCAGGGAGGCCAGTGCTGGGAACCTGCAGCCGC
TGTATGAGTTTGTGCAGGATGCCCTGAAGCCCGTGGCCAATGGGGAGGCTGCATGGAGGT
GCCCCGTGCTGCTGGTGGACGACCTCAGTGTGCTGCTGAGCCTGGGTGTCGGGGCAGTGG
CGGTGCTGGACTTCATCCACTACTGCAGAGCCACTGTGTGCTGGGAATGGAAGGGAAACA
TAGTGGCCCTTGTGCATGACAGTGGAGACACTGAGGACGAGGAGAATGACATCCTGCTGA
ATGGCCTTAGTCACCAGAGCCACCTGATCCTTCGGGCTGAGGGTCTGGCCACCGGCTTCT
GCAAGGATGTGCATGGGCAGCTGAGTGTCCTGTGGAGGAGACCCCTGCAGCCCACATCCC
AGCGGGATCAGAGCCTCACTTACCAGTACAAGATACAGGACAAGAACGTGTCCTTTTTTG
CCAAAGGAATGTCTCCTGCTGTCCTGTGACCTGATTTAGGGGCAGCTGAAGTTACCTTGG
GTTGTTTTTGGATGCAAAGATAAAGCAACTGAGCAGAAATGGATCTTTACACCTTTGCAG
TGGACTGCCAGCACCACTGTGACCCAGGGATGGTGGAACGGTGCTGTGATGGTTTGCCTT
TGTTCCTGTGGGCCCGGTATAGAAAATCCATGAGGAATCTGCAGTCCAGCCTCAGCTGAG
AGAGATGCTGCATGTTGAACTGGGTGAAAGGGATCCTTTGGTGCCTTCCTTATAAATACA
CTTCAGCCCCAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCCAGCTTCAGCCGTCTCTGCCGCAGCCCCATCTCTTCGTCCAGGGCGCTCCTTCGCAG
AGCTGAGAATGTTCTCGGAACTCAGTAACCTTCTCAACACCAGTCCTGACAAGGTGGAGC
AGGGGAAACTGACTCTACTCTGTGATGTCAAGACTGATGGCAGTTTCCTTGTGCATCACT
TTCTCTCCTTCTACCTCAAAGCTCATTGTAAAGTCTGCTTTGTGGCACTCACTCAGTCCT
TCAGTCACTACAATATCGTGGGACAGAAGCTGGGGGTCAGTCTGACCATAGCACGGGAAC
GCGGGCAGCTTGTGTTTCTTGAGGGCCTCAAGTCTGCCATGGACATCTTCTTCCGGCCTC
AGGAGGAGCCACACCCGCTGCAGTTCCTCAGGGAGGCCAGTGCTGGGAACCTGCAGCCGC
TGTATGAGTTTGTGCAGGATGCCCTGAAGCCCGTGGCCAATGGGGAGGCTGCATGGAGGT
GCCCCGTGCTGCTGGTGGACGACCTCAGTGTGCTGCTGAGCCTGGGTGTCGGGGCAGTGG
CGGTGCTGGACTTCATCCACTACTGCAGAGCCACTGTGTGCTGGGAATGGAAGGGAAACA
TAGTGGCCCTTGTGCATGACAGTGGAGACACTGAGGACGAGGAGAATGACATCCTGCTGA
ATGGCCTTAGTCACCAGAGCCACCTGATCCTTCGGGCTGAGGGTCTGGCCACCGGCTTCT
GCAAGGATGTGCATGGGCAGCTGAGTGTCCTGTGGAGGAGACCCCTGCAGCCCACATCCC
AGCGGGATCAGAGCCTCACTTACCAGTACAAGATACAGGACAAGAACGTGTCCTTTTTTG
CCAAAGGAATGTCTCCTGCTGTCCTGTGACCTGATTTAGGGGCAGCTGAAGTTACCTTGG
GTTGTTTTTGGATGCAAAGATAAAGCAACTGAGCAGAAATGGATCTTTACACCTTTGCAG
TGGACTGCCAGCACCACTGTGACCCAGGGATGGTGGAACGGTGCTGTGATGGTTTGCCTT
TGTTCCTGTGGGCCCGGTATAGAAAATCCATGAGGAATCTGCAGTCCAGCCTCAGCTGAG
AGAGATGCTGCATGTTGAACTGGGTGAAAGGGATCCTTTGGTGCCTTCCTTATAAATACA
CTTCAGCCCCAA
|
|
389-597, gnl|bosTau2|chr7 (20457618-20457410) |
|
389-597, gnl|canFam2|chr20 (44405274-44405021) |
|
389-597, gnl|danRer3|chr16 (34442552-34442774) |
|
389-597, gnl|dasNov1|scaffold_62724 (851-584) |
|
389-597, gnl|echTel1|scaffold_227488 (2864-2583) |
|
389-597, gnl|fr1|chrUn (311997077-311996826) |
|
389-597, gnl|hg17|chr3 (47518117-47518384) |
|
389-597, gnl|Hg17|chr3 (47518348-47518140) |
|
389-597, gnl|loxAfr1|scaffold_15920 (7829-8098) |
|
389-597, gnl|mm7|chr9 (110013340-110013093) |
|
389-597, gnl|Mm7|chr9 (110013115-110013323) |
|
389-597, gnl|monDom2|scaffold_5 (82266186-82266453) |
|
389-597, gnl|oryCun1|scaffold_155378 (505-241) |
|
389-597, gnl|panTro1|chr2 (48983308-48983575) |
|
389-597, gnl|rheMac2|chr2 (89014020-89013768) |
|
389-597, gnl|rn3|chr8 (114709871-114709625) |
|
389-597, gnl|tetNig1|chrUn_random (40938235-40938001) |
| |
|
739-942, gnl|bosTau2|chr7 (20454143-20453939) |
|
739-942, gnl|Hg17|chr3 (47512693-47512313) |
|
739-942, gnl|Mm7|chr9 (110018182-110018525) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
389-597, gnl|bosTau2|chr7 (20457618-20457410) |
|
389-597, gnl|canFam2|chr20 (44405274-44405021) |
|
389-597, gnl|danRer3|chr16 (34442552-34442774) |
|
389-597, gnl|dasNov1|scaffold_62724 (851-584) |
|
389-597, gnl|echTel1|scaffold_227488 (2864-2583) |
|
389-597, gnl|fr1|chrUn (311997077-311996826) |
|
389-597, gnl|hg17|chr3 (47518117-47518384) |
|
389-597, gnl|Hg17|chr3 (47518348-47518140) |
|
389-597, gnl|loxAfr1|scaffold_15920 (7829-8098) |
|
389-597, gnl|mm7|chr9 (110013340-110013093) |
|
389-597, gnl|Mm7|chr9 (110013115-110013323) |
|
389-597, gnl|monDom2|scaffold_5 (82266186-82266453) |
|
389-597, gnl|oryCun1|scaffold_155378 (505-241) |
|
389-597, gnl|panTro1|chr2 (48983308-48983575) |
|
389-597, gnl|rheMac2|chr2 (89014020-89013768) |
|
389-597, gnl|rn3|chr8 (114709871-114709625) |
|
389-597, gnl|tetNig1|chrUn_random (40938235-40938001) |
| |
|
739-942, gnl|bosTau2|chr7 (20454143-20453939) |
|
739-942, gnl|Hg17|chr3 (47512693-47512313) |
|
739-942, gnl|Mm7|chr9 (110018182-110018525) |
|
nca (0.273748) |
|
mas (0.210305) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
cje (0.165235) |
|
cli (0.152812) |
|
pty (0.142714) |
|
ute (0.132784) |
|
pgl (0.118483) |
|
nca (0.273748) |
|
mas (0.210305) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
fty (0.17584) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
cje (0.165235) |
|
cli (0.152812) |
|
pty (0.142714) |
|
ute (0.132784) |
|
pgl (0.118483) |
