Ss1.1-Thy1-THY010075G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTTCGCTCCGCCCCGCAGCCTCGGAGTCCAAGCCGGTTCCTTACCGTTCCCGCAGTCG CCCGCCTCCTCTTTCCTTCCAACATGACAGATGCTGCCGTGTCCTTCGCCAAGGACTTCC TGGCAGGTGGAGTAGCCGCGGCCATCTCCAAGACTGCCGTAGCGCCCATCGAGCGGGTCA AGCTGCTGCTGCAGGTGCAGCATGCCAGCAAGCAAATCACTGCAGATAAGCAATACAAGG GCATCATAGACTGCGTGGTTCGTATCCCCAAGGAGCAGGGAGTCCTGTCCTTCTGGCGTG GTAACCTGGCCAATGTCATCAGATACTTCCCCACGCAGGCTCTCAACTTTGCGTTCAAAG ATAAATACAAGCAGATCTTCCTGGGCGGTGTGGACAAGAGGACCCAGTTTTGGCGCTACT TTGCAGGGAATCTGGCCTCAGGTGGTGCTGCTGGGGCCACATCCTTGTGTTTTGTGTACC CTCTCGACTTTGCCCGTACTCGTCTAGCCGCTGATGTGGGCAAAGCTGGAGCTGAAAGGG AATTCAGAGGCCTCGGCGACTGCCTGGTTAAGATCTACAAATCTGACGGGATTAGGGGCC TGTACCAAGGCTTTAACGTGTCTGTGCAGGGTATTATCATCTACCGAGCTGCCTACTTCG GTATCTATGACACCGCAAAGGGAATGCTTCCAGATCCCAAGAATACTCATATCTTCATCA GCTGGATGATCGCTCAGTCCGTCACCGCAGTTGCTGGGTTGACTTCCTATCCGTTTGACA CTGTACGTCGACGCATGATGATGCAGTCAGGACGCAAAGGAACTGATATCATGTACACAG GCACGCTTGACTGCTGGAGGAAGATTGCTCGTGACGAAGGAGCCAAAGCCTTTTTCAAGG GCGCCTGGTCCAATGTCCTCAGAGGCATGGGTGGTGCTTTTGTGCTTGTCTTGTATGATG AAATCAAGAAGTTCACATAAGTTATTTCCTAGTTTTTCTCCCTCAGTGAACAGGCATGTT GTATTATATAACATATCTTGAGCATTCCTGGCAGACTGTTGGCTGTCTATTTATCAATGG CAACTATGTACTGGTTGAAAATGGGAAGCAATAATACTCACGTGACCAGTTTTCTCTTAA AGCCATTTCCATGATAATGATGGGACCCAATTATATTTTTTATTTCAGTCACTCCTGATA AATGACAAATTTGAAGAAATAAAAAATATCTGAGATATAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTTCGCTCCGCCCCGCAGCCTCGGAGTCCAAGCCGGTTCCTTACCGTTCCCGCAGTCG CCCGCCTCCTCTTTCCTTCCAACATGACAGATGCTGCCGTGTCCTTCGCCAAGGACTTCC TGGCAGGTGGAGTAGCCGCGGCCATCTCCAAGACTGCCGTAGCGCCCATCGAGCGGGTCA AGCTGCTGCTGCAGGTGCAGCATGCCAGCAAGCAAATCACTGCAGATAAGCAATACAAGG GCATCATAGACTGCGTGGTTCGTATCCCCAAGGAGCAGGGAGTCCTGTCCTTCTGGCGTG GTAACCTGGCCAATGTCATCAGATACTTCCCCACGCAGGCTCTCAACTTTGCGTTCAAAG ATAAATACAAGCAGATCTTCCTGGGCGGTGTGGACAAGAGGACCCAGTTTTGGCGCTACT TTGCAGGGAATCTGGCCTCAGGTGGTGCTGCTGGGGCCACATCCTTGTGTTTTGTGTACC CTCTCGACTTTGCCCGTACTCGTCTAGCCGCTGATGTGGGCAAAGCTGGAGCTGAAAGGG AATTCAGAGGCCTCGGCGACTGCCTGGTTAAGATCTACAAATCTGACGGGATTAGGGGCC TGTACCAAGGCTTTAACGTGTCTGTGCAGGGTATTATCATCTACCGAGCTGCCTACTTCG GTATCTATGACACCGCAAAGGGAATGCTTCCAGATCCCAAGAATACTCATATCTTCATCA GCTGGATGATCGCTCAGTCCGTCACCGCAGTTGCTGGGTTGACTTCCTATCCGTTTGACA CTGTACGTCGACGCATGATGATGCAGTCAGGACGCAAAGGAACTGATATCATGTACACAG GCACGCTTGACTGCTGGAGGAAGATTGCTCGTGACGAAGGAGCCAAAGCCTTTTTCAAGG GCGCCTGGTCCAATGTCCTCAGAGGCATGGGTGGTGCTTTTGTGCTTGTCTTGTATGATG AAATCAAGAAGTTCACATAAGTTATTTCCTAGTTTTTCTCCCTCAGTGAACAGGCATGTT GTATTATATAACATATCTTGAGCATTCCTGGCAGACTGTTGGCTGTCTATTTATCAATGG CAACTATGTACTGGTTGAAAATGGGAAGCAATAATACTCACGTGACCAGTTTTCTCTTAA AGCCATTTCCATGATAATGATGGGACCCAATTATATTTTTTATTTCAGTCACTCCTGATA AATGACAAATTTGAAGAAATAAAAAATATCTGAGATATAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 102-280, gnl|bosTau2|chr17 (18482463-18482641) | |
| 102-280, gnl|Hg17|chr4 (129009360-129009538) | |
| 102-280, gnl|Mm7|chr3 (40475700-40475878) | |
| 676-820, gnl|bosTau2|chr27 (9687484-9687341) | |
| 676-820, gnl|canFam2|chr16 (48416443-48416278) | |
| 676-820, gnl|danRer3|chr14 (54591835-54591674) | |
| 676-820, gnl|dasNov1|scaffold_48907 (40367-40532) | |
| 676-820, gnl|echTel1|scaffold_104674 (1483-1623) | |
| 676-820, gnl|fr1|chrUn (86526171-86526320) | |
| 676-820, gnl|galGal2|chr4 (39971001-39970850) | |
| 676-820, gnl|hg17|chr4 (186442056-186442221) | |
| 676-820, gnl|Hg17|chr4 (186442057-186442200) | |
| 676-820, gnl|loxAfr1|scaffold_47065 (5294-5145) | |
| 676-820, gnl|mm7|chr8 (44986415-44986250) | |
| 676-820, gnl|Mm7|chr8 (44986412-44986269) | |
| 676-820, gnl|monDom2|scaffold_9 (67330567-67330727) | |
| 676-820, gnl|oryCun1|scaffold_210403 (129443-129281) | |
| 676-820, gnl|panTro1|chr3 (204651094-204651259) | |
| 676-820, gnl|rheMac2|chr5 (177239338-177239503) | |
| 676-820, gnl|rn3|chr16 (49356009-49356173) | |
| 676-820, gnl|tetNig1|chr18 (5562340-5562191) | |
| 676-820, gnl|xenTro1|scaffold_99 (2038588-2038753) | |
| 823-1237, gnl|bosTau2|chrX (1143095-1143502) | |
| 823-1237, gnl|Hg17|chrX (118386746-118387163) | |
| 823-1237, gnl|Mm7|chrX (31558150-31558570) | |
| 972-1158, gnl|bosTau2|chr18 (37047323-37047511) | |
| 972-1158, gnl|Hg17|chrX (118386901-118387077) | |
| 972-1158, gnl|Mm7|chrX (31558301-31558486) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-280, gnl|bosTau2|chr17 (18482463-18482641) | |
| 102-280, gnl|Hg17|chr4 (129009360-129009538) | |
| 102-280, gnl|Mm7|chr3 (40475700-40475878) | |
| 676-820, gnl|bosTau2|chr27 (9687484-9687341) | |
| 676-820, gnl|canFam2|chr16 (48416443-48416278) | |
| 676-820, gnl|danRer3|chr14 (54591835-54591674) | |
| 676-820, gnl|dasNov1|scaffold_48907 (40367-40532) | |
| 676-820, gnl|echTel1|scaffold_104674 (1483-1623) | |
| 676-820, gnl|fr1|chrUn (86526171-86526320) | |
| 676-820, gnl|galGal2|chr4 (39971001-39970850) | |
| 676-820, gnl|hg17|chr4 (186442056-186442221) | |
| 676-820, gnl|Hg17|chr4 (186442057-186442200) | |
| 676-820, gnl|loxAfr1|scaffold_47065 (5294-5145) | |
| 676-820, gnl|mm7|chr8 (44986415-44986250) | |
| 676-820, gnl|Mm7|chr8 (44986412-44986269) | |
| 676-820, gnl|monDom2|scaffold_9 (67330567-67330727) | |
| 676-820, gnl|oryCun1|scaffold_210403 (129443-129281) | |
| 676-820, gnl|panTro1|chr3 (204651094-204651259) | |
| 676-820, gnl|rheMac2|chr5 (177239338-177239503) | |
| 676-820, gnl|rn3|chr16 (49356009-49356173) | |
| 676-820, gnl|tetNig1|chr18 (5562340-5562191) | |
| 676-820, gnl|xenTro1|scaffold_99 (2038588-2038753) | |
| 823-1237, gnl|bosTau2|chrX (1143095-1143502) | |
| 823-1237, gnl|Hg17|chrX (118386746-118387163) | |
| 823-1237, gnl|Mm7|chrX (31558150-31558570) | |
| 972-1158, gnl|bosTau2|chr18 (37047323-37047511) | |
| 972-1158, gnl|Hg17|chrX (118386901-118387077) | |
| 972-1158, gnl|Mm7|chrX (31558301-31558486) |
| Expressed library(ies): 70 entry(ies) | More info |
| Expressed library(ies): 70 entry(ies) | Help | Less info |
| sin (2.79916) | |
| duo (2.76482) | |
| nje (2.65472) | |
| rec (2.59605) | |
| lin (1.89284) | |
| jej (1.78059) | |
| cje (1.65235) | |
| sug (1.52749) | |
| col (1.36505) | |
| cst (1.26033) | |
| spc (1.02029) | |
| cbe (0.956938) | |
| ill (0.877963) | |
| cki (0.826173) | |
| ton (0.702001) | |
| eje (0.691836) | |
| fhi (0.678311) | |
| kid (0.648677) | |
| nco (0.646935) | |
| nlu (0.575043) | |
| spl (0.572738) | |
| fce (0.543183) | |
| lyg (0.532411) | |
| ret (0.514933) | |
| mcp (0.511945) | |
| thg (0.507164) | |
| mga (0.480615) | |
| pgl (0.473934) | |
| hyp (0.42851) | |
| ssp (0.406559) | |
| pla (0.401016) | |
| ute (0.398353) | |
| aor (0.390549) | |
| sto (0.359648) | |
| cut (0.339847) | |
| cty (0.31224) | |
| cli (0.305623) | |
| lun (0.300978) | |
| ski (0.29347) | |
| cte (0.29274) | |
| che (0.272628) | |
| bla (0.248694) | |
| tra (0.246184) | |
| clu (0.239292) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fty (0.17584) | |
| csp (0.161186) | |
| fco (0.157208) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 70 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (2.79916) | |
| duo (2.76482) | |
| nje (2.65472) | |
| rec (2.59605) | |
| lin (1.89284) | |
| jej (1.78059) | |
| cje (1.65235) | |
| sug (1.52749) | |
| col (1.36505) | |
| cst (1.26033) | |
| spc (1.02029) | |
| cbe (0.956938) | |
| ill (0.877963) | |
| cki (0.826173) | |
| ton (0.702001) | |
| eje (0.691836) | |
| fhi (0.678311) | |
| kid (0.648677) | |
| nco (0.646935) | |
| nlu (0.575043) | |
| spl (0.572738) | |
| fce (0.543183) | |
| lyg (0.532411) | |
| ret (0.514933) | |
| mcp (0.511945) | |
| thg (0.507164) | |
| mga (0.480615) | |
| pgl (0.473934) | |
| hyp (0.42851) | |
| ssp (0.406559) | |
| pla (0.401016) | |
| ute (0.398353) | |
| aor (0.390549) | |
| sto (0.359648) | |
| cut (0.339847) | |
| cty (0.31224) | |
| cli (0.305623) | |
| lun (0.300978) | |
| ski (0.29347) | |
| cte (0.29274) | |
| che (0.272628) | |
| bla (0.248694) | |
| tra (0.246184) | |
| clu (0.239292) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fty (0.17584) | |
| csp (0.161186) | |
| fco (0.157208) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |