Ss1.1-Thy1-THY010081C08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGAACACGTGGCTGCCGCGGAGTCAGAGCAGCAATGGCGGCGGGTGGCGGCGGTGTT GCCGACCCCCTGTCCCCCGCGGGGGTACCCTGCGCCTTCTCTCCGCAAAACCAGGCCTAT TTCGCCTTAGCTTCTACTGACGGTCACCTGCGAGTGTGGGAGACAGCCAACAACCGGCTG CACCAAGAGTATGTGCCTTCCGCGCACCTCAGCGGTACCTGCACCTGCCTGGCCTGGGCG CCAGCACGGTCGCAGGCCAAGGAAGGTCCACAGAGGAAAAAAAGAAAATCAGAAGCTGTA GAAACGAGTAACCAAGATGACTTATTGGCGCTTGGTACAGCAGTTGGTAGTGTTTTATTA TACAGTACAGTAAGGGGAGAATTACACAGTAAATTGATAAATGGTGGACATGACAACAAA GTCAATTGCATACAGTGGCATCAGGACAATGGATGTTTGTATAGTTGTTCAGATGATAAA CATATTGTGGAGTGGAACACACAGACATGCAAAGTAAAGTGCAAATGGAAAGGTGATAAT AGCAGCGTCAGTTCCCTGTGTATCAGCCCAGATGGAAAGATGTTGCTTTCAGCTGGTCGA ACAATCAAACTATGGGTTTTGGAGACCAAAGAAGTCTACAGACACTTCACAGGACACGCG ACACCAGTTTCATCACTTATGTTCACTACTATCAGACCTCCTAATGAGAGCCAACCGTTC GATGGAATTACAGGTCTTTATTTCTTATCTGGAGCAAAAAGAATGCAGTGATGTCTTTTA CAGTTACAGATGAACCTGTCTACATTGATTTGACTCTGTCAGAAAACAAAGAAGAGCCTG TGAAGTTAGCTGATTGATTTGACTCTGTCAGAAAACAAAGAAGAGCCTGTGAAGTTAGCT GTTTGTTGCAGAGACGGTCAAGTTCATCTTTTTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGAACACGTGGCTGCCGCGGAGTCAGAGCAGCAATGGCGGCGGGTGGCGGCGGTGTT GCCGACCCCCTGTCCCCCGCGGGGGTACCCTGCGCCTTCTCTCCGCAAAACCAGGCCTAT TTCGCCTTAGCTTCTACTGACGGTCACCTGCGAGTGTGGGAGACAGCCAACAACCGGCTG CACCAAGAGTATGTGCCTTCCGCGCACCTCAGCGGTACCTGCACCTGCCTGGCCTGGGCG CCAGCACGGTCGCAGGCCAAGGAAGGTCCACAGAGGAAAAAAAGAAAATCAGAAGCTGTA GAAACGAGTAACCAAGATGACTTATTGGCGCTTGGTACAGCAGTTGGTAGTGTTTTATTA TACAGTACAGTAAGGGGAGAATTACACAGTAAATTGATAAATGGTGGACATGACAACAAA GTCAATTGCATACAGTGGCATCAGGACAATGGATGTTTGTATAGTTGTTCAGATGATAAA CATATTGTGGAGTGGAACACACAGACATGCAAAGTAAAGTGCAAATGGAAAGGTGATAAT AGCAGCGTCAGTTCCCTGTGTATCAGCCCAGATGGAAAGATGTTGCTTTCAGCTGGTCGA ACAATCAAACTATGGGTTTTGGAGACCAAAGAAGTCTACAGACACTTCACAGGACACGCG ACACCAGTTTCATCACTTATGTTCACTACTATCAGACCTCCTAATGAGAGCCAACCGTTC GATGGAATTACAGGTCTTTATTTCTTATCTGGAGCAAAAAGAATGCAGTGATGTCTTTTA CAGTTACAGATGAACCTGTCTACATTGATTTGACTCTGTCAGAAAACAAAGAAGAGCCTG TGAAGTTAGCTGATTGATTTGACTCTGTCAGAAAACAAAGAAGAGCCTGTGAAGTTAGCT GTTTGTTGCAGAGACGGTCAAGTTCATCTTTTTGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 5-274, gnl|bosTau2|chr11 (50311085-50311355) | |
| 5-274, gnl|Hg17|chr2 (29029184-29029454) | |
| 5-274, gnl|Mm7|chr17 (69897603-69897874) | |
| 521-642, gnl|bosTau2|chr11 (50329239-50329360) | |
| 521-642, gnl|canFam2|chr17 (25887505-25887672) | |
| 521-642, gnl|dasNov1|scaffold_202816 (3646-3809) | |
| 521-642, gnl|echTel1|scaffold_161788 (6258-6098) | |
| 521-642, gnl|fr1|chrUn (54115610-54115458) | |
| 521-642, gnl|galGal2|chr3 (8565032-8565239) | |
| 521-642, gnl|hg17|chr2 (29047069-29047235) | |
| 521-642, gnl|Hg17|chr2 (29047106-29047227) | |
| 521-642, gnl|loxAfr1|scaffold_31871 (2119-2279) | |
| 521-642, gnl|mm7|chr17 (69911498-69911663) | |
| 521-642, gnl|Mm7|chr17 (69911534-69911655) | |
| 521-642, gnl|monDom2|scaffold_1 (146715666-146715517) | |
| 521-642, gnl|oryCun1|scaffold_183828 (25790-25625) | |
| 521-642, gnl|panTro1|chr12 (30006800-30006966) | |
| 521-642, gnl|rheMac2|chr13 (28909137-28909303) | |
| 521-642, gnl|rn3|chr6 (23980502-23980337) | |
| 521-642, gnl|tetNig1|chr10 (1492848-1492719) | |
| 521-642, gnl|xenTro1|scaffold_178 (1383266-1383435) | |
| 643-756, gnl|bosTau2|chr11 (50330142-50330255) | |
| 643-756, gnl|canFam2|chr17 (25888416-25888577) | |
| 643-756, gnl|dasNov1|scaffold_48830 (8588-8427) | |
| 643-756, gnl|echTel1|scaffold_161788 (5199-5030) | |
| 643-756, gnl|fr1|chrUn (54115363-54115233) | |
| 643-756, gnl|galGal2|chr3 (8566343-8566515) | |
| 643-756, gnl|hg17|chr2 (29048578-29048740) | |
| 643-756, gnl|Hg17|chr2 (29048586-29048699) | |
| 643-756, gnl|loxAfr1|scaffold_31871 (3233-3401) | |
| 643-756, gnl|mm7|chr17 (69913371-69913530) | |
| 643-756, gnl|Mm7|chr17 (69913379-69913489) | |
| 643-756, gnl|monDom2|scaffold_1 (146714352-146714186) | |
| 643-756, gnl|oryCun1|scaffold_183828 (24903-24741) | |
| 643-756, gnl|panTro1|chr12 (30008302-30008464) | |
| 643-756, gnl|rheMac2|chr13 (28910330-28910492) | |
| 643-756, gnl|rn3|chr6 (23978387-23978228) | |
| 643-756, gnl|xenTro1|scaffold_178 (1383860-1384012) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-274, gnl|bosTau2|chr11 (50311085-50311355) | |
| 5-274, gnl|Hg17|chr2 (29029184-29029454) | |
| 5-274, gnl|Mm7|chr17 (69897603-69897874) | |
| 521-642, gnl|bosTau2|chr11 (50329239-50329360) | |
| 521-642, gnl|canFam2|chr17 (25887505-25887672) | |
| 521-642, gnl|dasNov1|scaffold_202816 (3646-3809) | |
| 521-642, gnl|echTel1|scaffold_161788 (6258-6098) | |
| 521-642, gnl|fr1|chrUn (54115610-54115458) | |
| 521-642, gnl|galGal2|chr3 (8565032-8565239) | |
| 521-642, gnl|hg17|chr2 (29047069-29047235) | |
| 521-642, gnl|Hg17|chr2 (29047106-29047227) | |
| 521-642, gnl|loxAfr1|scaffold_31871 (2119-2279) | |
| 521-642, gnl|mm7|chr17 (69911498-69911663) | |
| 521-642, gnl|Mm7|chr17 (69911534-69911655) | |
| 521-642, gnl|monDom2|scaffold_1 (146715666-146715517) | |
| 521-642, gnl|oryCun1|scaffold_183828 (25790-25625) | |
| 521-642, gnl|panTro1|chr12 (30006800-30006966) | |
| 521-642, gnl|rheMac2|chr13 (28909137-28909303) | |
| 521-642, gnl|rn3|chr6 (23980502-23980337) | |
| 521-642, gnl|tetNig1|chr10 (1492848-1492719) | |
| 521-642, gnl|xenTro1|scaffold_178 (1383266-1383435) | |
| 643-756, gnl|bosTau2|chr11 (50330142-50330255) | |
| 643-756, gnl|canFam2|chr17 (25888416-25888577) | |
| 643-756, gnl|dasNov1|scaffold_48830 (8588-8427) | |
| 643-756, gnl|echTel1|scaffold_161788 (5199-5030) | |
| 643-756, gnl|fr1|chrUn (54115363-54115233) | |
| 643-756, gnl|galGal2|chr3 (8566343-8566515) | |
| 643-756, gnl|hg17|chr2 (29048578-29048740) | |
| 643-756, gnl|Hg17|chr2 (29048586-29048699) | |
| 643-756, gnl|loxAfr1|scaffold_31871 (3233-3401) | |
| 643-756, gnl|mm7|chr17 (69913371-69913530) | |
| 643-756, gnl|Mm7|chr17 (69913379-69913489) | |
| 643-756, gnl|monDom2|scaffold_1 (146714352-146714186) | |
| 643-756, gnl|oryCun1|scaffold_183828 (24903-24741) | |
| 643-756, gnl|panTro1|chr12 (30008302-30008464) | |
| 643-756, gnl|rheMac2|chr13 (28910330-28910492) | |
| 643-756, gnl|rn3|chr6 (23978387-23978228) | |
| 643-756, gnl|xenTro1|scaffold_178 (1383860-1384012) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cty (0.10408) |