Ss1.1-Thy1-THY010081E10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCCTGGACTCCACCGAGTATCTGTTGCCGTCATGTCGGCTGCGATTGCAGCTCTGGC CGCTTCCTATGGTTCGGGTTCAGGGTCCGAATCGGACTCGGACAGTGAGGGCGGAAGGTG TTCACTGCCAGCCGCGGACTCCCTCATGCACTTGACTAAATCGCCTTCGGCCAAGCCCTC TCTGGCGGTAGCCGTGGACTCCGCTCCGGAGGTGGCAGTTAAGGAAGATTTGGAGACTGG AGTTCACCTTGACCCTGCTGTCAAAGAGGTTCAGTATAATCCTACCTATGAGACCATGTT TGCTCCTGAGTTTGGACCGGAAAACCCCTTTAGGACGCAGCAAATGGCTGCCCCTAGAAA TATGCTTTCTGGATATGCTGAACCAGCTCACATCAATGACTTTATGTTTGAACAGCAAAG AAGAACTTTTGCCACATATGGTTATGCATTGGACCCTTCATTAGATAATCATCAGGTATC TACTAAGTATATTGGTTCTGTAGAAGAAGCTGAAAAAAATCAAGGTTTAACTGTTTTTGA AACTGGTCAGAAGAAAATAGAAAAGAGGAAAAAATTCAAAGAAAATGATGCATCTAATAT TGATGGTTTCTTGGGACCATGGGCAAAATATGTGGATGAAAAAGATGTAGCCAAACCTTC AGAAGAAGAACAAAAAGAATTGGATGAAATCACAGCAAAGAGGCAGAAAAAAGGCAAACA GGAAGAAGAGAAACCTGGGGAGGAAAAGACTATCTTACATGTTAAAGAAATGTATGACTA TCAAGGCAGATCCTATCTTCACATACCTCAGGATGTTGGTGTTAATCTGAGGTCAACTGT GCCACCTGAGAAATGTTATCTTCCCAAAAAACAAATTCATGTGTGGTCTGGACACACCAA GGGTGTCAGTGCAGTCAGATTGTTTCCTCTCTCCGGCCATTTGTTGCTGTCTTGTTCCAT GGACTGTAAAATTAAGCTATGGGAGGTTTATGGAGACAGGCGCTGTCTGCGAACATTTAT TGGTCACAGTAAAGCTGTTAGGGACATCTGCTTTAATACTGCAGGAACACAGTTCCTCAG CGCAGCTTATGATAGGTATCTTAAGCTCTGGGACACTGAAACAGGACAGTGCATATCAAG ATTTACAAACCGAAAAGTACCCTATTGTGTCAAATTTAATCCTGATGAAGATAAACAAAA CCTTTTTGTGGCTGGGATGTCTGATAAAAAGATTGTGCAGTGGGACATTCGAAGTGGAGA AATTGTGCAAGAATATGATCGGCATTTGGGTGCTGTCAACACCATTGTCTTTGTCGATGA AAACAGGAGATTTGTGAGCACATCTGATGATAAGAGCTTAAGAGTTTGGGAATGGGATAT TCCTGTGGATTTCAAGTATATAGCAGAACCTAGTATGCACTCTATGCCTGCAGTGACTTT GTCTCCAAATGGGAAATGGCTAGCATGCCAATCAATGGACAACCAGATTTTAATTTTTGG AGCACAGAACAGATTTAGATTAAATAAGAAAAAAATTTTTAAGGGCCATATGGTAGCAGG CTATGCATGTCAAGTGGACTTTTCACCAGATATGAGCTATGTGATTTCAGGAGATGGAAA TGGAAAATTAAATATCTGGGACTGGAAGACCACAAAACTCTACAGTAGATTTAAAGCTCA TGATAAAGTGTGTATAGGTGCAGTGTGGCATCCTCATGAAACATCTAAAGTCATAACTTG TGGTTGGGACGGTCTCATTAAATTGTGGGATTAATGGGATTAATCATTAAACTATCTAGG ATCATTTTTGATCCAATATCATATTTAACTATATTTAATTATTAAGTGTGTTGGAAGACA ACATGATTTACAAATTATGATTTTCTTACATGGCCCTATGACGTTGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCCTGGACTCCACCGAGTATCTGTTGCCGTCATGTCGGCTGCGATTGCAGCTCTGGC CGCTTCCTATGGTTCGGGTTCAGGGTCCGAATCGGACTCGGACAGTGAGGGCGGAAGGTG TTCACTGCCAGCCGCGGACTCCCTCATGCACTTGACTAAATCGCCTTCGGCCAAGCCCTC TCTGGCGGTAGCCGTGGACTCCGCTCCGGAGGTGGCAGTTAAGGAAGATTTGGAGACTGG AGTTCACCTTGACCCTGCTGTCAAAGAGGTTCAGTATAATCCTACCTATGAGACCATGTT TGCTCCTGAGTTTGGACCGGAAAACCCCTTTAGGACGCAGCAAATGGCTGCCCCTAGAAA TATGCTTTCTGGATATGCTGAACCAGCTCACATCAATGACTTTATGTTTGAACAGCAAAG AAGAACTTTTGCCACATATGGTTATGCATTGGACCCTTCATTAGATAATCATCAGGTATC TACTAAGTATATTGGTTCTGTAGAAGAAGCTGAAAAAAATCAAGGTTTAACTGTTTTTGA AACTGGTCAGAAGAAAATAGAAAAGAGGAAAAAATTCAAAGAAAATGATGCATCTAATAT TGATGGTTTCTTGGGACCATGGGCAAAATATGTGGATGAAAAAGATGTAGCCAAACCTTC AGAAGAAGAACAAAAAGAATTGGATGAAATCACAGCAAAGAGGCAGAAAAAAGGCAAACA GGAAGAAGAGAAACCTGGGGAGGAAAAGACTATCTTACATGTTAAAGAAATGTATGACTA TCAAGGCAGATCCTATCTTCACATACCTCAGGATGTTGGTGTTAATCTGAGGTCAACTGT GCCACCTGAGAAATGTTATCTTCCCAAAAAACAAATTCATGTGTGGTCTGGACACACCAA GGGTGTCAGTGCAGTCAGATTGTTTCCTCTCTCCGGCCATTTGTTGCTGTCTTGTTCCAT GGACTGTAAAATTAAGCTATGGGAGGTTTATGGAGACAGGCGCTGTCTGCGAACATTTAT TGGTCACAGTAAAGCTGTTAGGGACATCTGCTTTAATACTGCAGGAACACAGTTCCTCAG CGCAGCTTATGATAGGTATCTTAAGCTCTGGGACACTGAAACAGGACAGTGCATATCAAG ATTTACAAACCGAAAAGTACCCTATTGTGTCAAATTTAATCCTGATGAAGATAAACAAAA CCTTTTTGTGGCTGGGATGTCTGATAAAAAGATTGTGCAGTGGGACATTCGAAGTGGAGA AATTGTGCAAGAATATGATCGGCATTTGGGTGCTGTCAACACCATTGTCTTTGTCGATGA AAACAGGAGATTTGTGAGCACATCTGATGATAAGAGCTTAAGAGTTTGGGAATGGGATAT TCCTGTGGATTTCAAGTATATAGCAGAACCTAGTATGCACTCTATGCCTGCAGTGACTTT GTCTCCAAATGGGAAATGGCTAGCATGCCAATCAATGGACAACCAGATTTTAATTTTTGG AGCACAGAACAGATTTAGATTAAATAAGAAAAAAATTTTTAAGGGCCATATGGTAGCAGG CTATGCATGTCAAGTGGACTTTTCACCAGATATGAGCTATGTGATTTCAGGAGATGGAAA TGGAAAATTAAATATCTGGGACTGGAAGACCACAAAACTCTACAGTAGATTTAAAGCTCA TGATAAAGTGTGTATAGGTGCAGTGTGGCATCCTCATGAAACATCTAAAGTCATAACTTG TGGTTGGGACGGTCTCATTAAATTGTGGGATTAATGGGATTAATCATTAAACTATCTAGG ATCATTTTTGATCCAATATCATATTTAACTATATTTAATTATTAAGTGTGTTGGAAGACA ACATGATTTACAAATTATGATTTTCTTACATGGCCCTATGACGTTGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1699-1907, + strand, RNAz p=0.972458 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1699-1907, + strand, RNAz p=0.972458 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AF061241, + |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 1-240, gnl|bosTau2|chr4 (54067409-54067651) | |
| 1-240, gnl|canFam2|chr12 (69935009-69935512) | |
| 1-240, gnl|danRer3|chr20 (56057427-56057883) | |
| 1-240, gnl|dasNov1|scaffold_3821 (98889-98402) | |
| 1-240, gnl|echTel1|scaffold_288570 (10146-10624) | |
| 1-240, gnl|hg17|chr6 (110608057-110608537) | |
| 1-240, gnl|Hg17|chr6 (110608307-110608549) | |
| 1-240, gnl|loxAfr1|scaffold_4737 (93130-92649) | |
| 1-240, gnl|mm7|chr10 (40701490-40701015) | |
| 1-240, gnl|Mm7|chr10 (40701245-40701001) | |
| 1-240, gnl|monDom2|scaffold_0 (109885473-109884982) | |
| 1-240, gnl|oryCun1|scaffold_97614 (9994-10477) | |
| 1-240, gnl|panTro1|chr5 (112949479-112949956) | |
| 1-240, gnl|rheMac2|chr4 (153778878-153778398) | |
| 1-240, gnl|rn3|chr20_random (432456-431977) | |
| 309-442, gnl|bosTau2|chr4 (54087287-54087420) | |
| 309-442, gnl|canFam2|chr12 (69954701-69954806) | |
| 309-442, gnl|danRer3|chr20 (56050046-56049950) | |
| 309-442, gnl|dasNov1|scaffold_303177 (945-1038) | |
| 309-442, gnl|echTel1|scaffold_313902 (2424-2529) | |
| 309-442, gnl|fr1|chrUn (23032673-23032770) | |
| 309-442, gnl|galGal2|chr3 (65054684-65054582) | |
| 309-442, gnl|hg17|chr6 (110629440-110629545) | |
| 309-442, gnl|Hg17|chr6 (110629452-110629585) | |
| 309-442, gnl|loxAfr1|scaffold_4737 (68666-68561) | |
| 309-442, gnl|mm7|chr10 (40676037-40675932) | |
| 309-442, gnl|Mm7|chr10 (40676023-40675890) | |
| 309-442, gnl|monDom2|scaffold_0 (109854865-109854760) | |
| 309-442, gnl|oryCun1|scaffold_207189 (189065-188960) | |
| 309-442, gnl|panTro1|chr5 (112970632-112970737) | |
| 309-442, gnl|rheMac2|chr4 (153758632-153758527) | |
| 309-442, gnl|rn3|chr20_random (506808-506913) | |
| 309-442, gnl|tetNig1|chr14 (2750225-2750330) | |
| 309-442, gnl|xenTro1|scaffold_174 (338093-338198) | |
| 518-665, gnl|bosTau2|chr4 (54092005-54092152) | |
| 518-665, gnl|Hg17|chr6 (110636973-110637120) | |
| 518-665, gnl|Mm7|chr10 (40669421-40669274) | |
| 761-902, gnl|bosTau2|chr4 (54096045-54096186) | |
| 761-902, gnl|Hg17|chr6 (110640028-110640169) | |
| 761-902, gnl|Mm7|chr10 (40666409-40666268) | |
| 1022-1132, gnl|bosTau2|chr4 (54102781-54102891) | |
| 1022-1132, gnl|canFam2|chr12 (69972748-69972903) | |
| 1022-1132, gnl|danRer3|chr20 (56039986-56039858) | |
| 1022-1132, gnl|dasNov1|scaffold_3821 (60097-59941) | |
| 1022-1132, gnl|echTel1|scaffold_292990 (810-662) | |
| 1022-1132, gnl|fr1|chrUn (23038142-23038255) | |
| 1022-1132, gnl|galGal2|chr3 (65037015-65036853) | |
| 1022-1132, gnl|hg17|chr6 (110645561-110645717) | |
| 1022-1132, gnl|Hg17|chr6 (110645597-110645707) | |
| 1022-1132, gnl|loxAfr1|scaffold_4737 (50396-50244) | |
| 1022-1132, gnl|mm7|chr10 (40661524-40661383) | |
| 1022-1132, gnl|Mm7|chr10 (40661489-40661381) | |
| 1022-1132, gnl|monDom2|scaffold_0 (109838651-109838497) | |
| 1022-1132, gnl|oryCun1|scaffold_207189 (173365-173221) | |
| 1022-1132, gnl|panTro1|chr5 (112986852-112987008) | |
| 1022-1132, gnl|rheMac2|chr4 (153742968-153742812) | |
| 1022-1132, gnl|rn3|chr20 (44988176-44988035) | |
| 1022-1132, gnl|tetNig1|chr14 (2754738-2754869) | |
| 1022-1132, gnl|xenTro1|scaffold_174 (350006-350152) | |
| 1238-1375, gnl|bosTau2|chr4 (54104518-54104655) | |
| 1238-1375, gnl|canFam2|chr12 (69974299-69974452) | |
| 1238-1375, gnl|danRer3|chr20 (56033914-56033773) | |
| 1238-1375, gnl|dasNov1|scaffold_3821 (57308-57155) | |
| 1238-1375, gnl|echTel1|scaffold_288570 (48712-48865) | |
| 1238-1375, gnl|fr1|chrUn (23039101-23039254) | |
| 1238-1375, gnl|galGal2|chr3 (65034886-65034742) | |
| 1238-1375, gnl|hg17|chr6 (110647630-110647783) | |
| 1238-1375, gnl|Hg17|chr6 (110647629-110647766) | |
| 1238-1375, gnl|loxAfr1|scaffold_4737 (48209-48056) | |
| 1238-1375, gnl|mm7|chr10 (40659836-40659684) | |
| 1238-1375, gnl|Mm7|chr10 (40659835-40659698) | |
| 1238-1375, gnl|monDom2|scaffold_0 (109837391-109837238) | |
| 1238-1375, gnl|oryCun1|scaffold_171360 (11097-11232) | |
| 1238-1375, gnl|panTro1|chr5 (112988920-112989073) | |
| 1238-1375, gnl|rheMac2|chr4 (153740908-153740755) | |
| 1238-1375, gnl|rn3|chr20 (44984656-44984504) | |
| 1238-1375, gnl|tetNig1|chr14 (2755664-2755817) | |
| 1238-1375, gnl|xenTro1|scaffold_174 (352681-352824) | |
| 1580-1907, gnl|bosTau2|chr4 (54113448-54113771) | |
| 1580-1907, gnl|Hg17|chr6 (110657833-110658141) | |
| 1580-1907, gnl|Mm7|chr10 (40620876-40620552) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-240, gnl|bosTau2|chr4 (54067409-54067651) | |
| 1-240, gnl|canFam2|chr12 (69935009-69935512) | |
| 1-240, gnl|danRer3|chr20 (56057427-56057883) | |
| 1-240, gnl|dasNov1|scaffold_3821 (98889-98402) | |
| 1-240, gnl|echTel1|scaffold_288570 (10146-10624) | |
| 1-240, gnl|hg17|chr6 (110608057-110608537) | |
| 1-240, gnl|Hg17|chr6 (110608307-110608549) | |
| 1-240, gnl|loxAfr1|scaffold_4737 (93130-92649) | |
| 1-240, gnl|mm7|chr10 (40701490-40701015) | |
| 1-240, gnl|Mm7|chr10 (40701245-40701001) | |
| 1-240, gnl|monDom2|scaffold_0 (109885473-109884982) | |
| 1-240, gnl|oryCun1|scaffold_97614 (9994-10477) | |
| 1-240, gnl|panTro1|chr5 (112949479-112949956) | |
| 1-240, gnl|rheMac2|chr4 (153778878-153778398) | |
| 1-240, gnl|rn3|chr20_random (432456-431977) | |
| 309-442, gnl|bosTau2|chr4 (54087287-54087420) | |
| 309-442, gnl|canFam2|chr12 (69954701-69954806) | |
| 309-442, gnl|danRer3|chr20 (56050046-56049950) | |
| 309-442, gnl|dasNov1|scaffold_303177 (945-1038) | |
| 309-442, gnl|echTel1|scaffold_313902 (2424-2529) | |
| 309-442, gnl|fr1|chrUn (23032673-23032770) | |
| 309-442, gnl|galGal2|chr3 (65054684-65054582) | |
| 309-442, gnl|hg17|chr6 (110629440-110629545) | |
| 309-442, gnl|Hg17|chr6 (110629452-110629585) | |
| 309-442, gnl|loxAfr1|scaffold_4737 (68666-68561) | |
| 309-442, gnl|mm7|chr10 (40676037-40675932) | |
| 309-442, gnl|Mm7|chr10 (40676023-40675890) | |
| 309-442, gnl|monDom2|scaffold_0 (109854865-109854760) | |
| 309-442, gnl|oryCun1|scaffold_207189 (189065-188960) | |
| 309-442, gnl|panTro1|chr5 (112970632-112970737) | |
| 309-442, gnl|rheMac2|chr4 (153758632-153758527) | |
| 309-442, gnl|rn3|chr20_random (506808-506913) | |
| 309-442, gnl|tetNig1|chr14 (2750225-2750330) | |
| 309-442, gnl|xenTro1|scaffold_174 (338093-338198) | |
| 518-665, gnl|bosTau2|chr4 (54092005-54092152) | |
| 518-665, gnl|Hg17|chr6 (110636973-110637120) | |
| 518-665, gnl|Mm7|chr10 (40669421-40669274) | |
| 761-902, gnl|bosTau2|chr4 (54096045-54096186) | |
| 761-902, gnl|Hg17|chr6 (110640028-110640169) | |
| 761-902, gnl|Mm7|chr10 (40666409-40666268) | |
| 1022-1132, gnl|bosTau2|chr4 (54102781-54102891) | |
| 1022-1132, gnl|canFam2|chr12 (69972748-69972903) | |
| 1022-1132, gnl|danRer3|chr20 (56039986-56039858) | |
| 1022-1132, gnl|dasNov1|scaffold_3821 (60097-59941) | |
| 1022-1132, gnl|echTel1|scaffold_292990 (810-662) | |
| 1022-1132, gnl|fr1|chrUn (23038142-23038255) | |
| 1022-1132, gnl|galGal2|chr3 (65037015-65036853) | |
| 1022-1132, gnl|hg17|chr6 (110645561-110645717) | |
| 1022-1132, gnl|Hg17|chr6 (110645597-110645707) | |
| 1022-1132, gnl|loxAfr1|scaffold_4737 (50396-50244) | |
| 1022-1132, gnl|mm7|chr10 (40661524-40661383) | |
| 1022-1132, gnl|Mm7|chr10 (40661489-40661381) | |
| 1022-1132, gnl|monDom2|scaffold_0 (109838651-109838497) | |
| 1022-1132, gnl|oryCun1|scaffold_207189 (173365-173221) | |
| 1022-1132, gnl|panTro1|chr5 (112986852-112987008) | |
| 1022-1132, gnl|rheMac2|chr4 (153742968-153742812) | |
| 1022-1132, gnl|rn3|chr20 (44988176-44988035) | |
| 1022-1132, gnl|tetNig1|chr14 (2754738-2754869) | |
| 1022-1132, gnl|xenTro1|scaffold_174 (350006-350152) | |
| 1238-1375, gnl|bosTau2|chr4 (54104518-54104655) | |
| 1238-1375, gnl|canFam2|chr12 (69974299-69974452) | |
| 1238-1375, gnl|danRer3|chr20 (56033914-56033773) | |
| 1238-1375, gnl|dasNov1|scaffold_3821 (57308-57155) | |
| 1238-1375, gnl|echTel1|scaffold_288570 (48712-48865) | |
| 1238-1375, gnl|fr1|chrUn (23039101-23039254) | |
| 1238-1375, gnl|galGal2|chr3 (65034886-65034742) | |
| 1238-1375, gnl|hg17|chr6 (110647630-110647783) | |
| 1238-1375, gnl|Hg17|chr6 (110647629-110647766) | |
| 1238-1375, gnl|loxAfr1|scaffold_4737 (48209-48056) | |
| 1238-1375, gnl|mm7|chr10 (40659836-40659684) | |
| 1238-1375, gnl|Mm7|chr10 (40659835-40659698) | |
| 1238-1375, gnl|monDom2|scaffold_0 (109837391-109837238) | |
| 1238-1375, gnl|oryCun1|scaffold_171360 (11097-11232) | |
| 1238-1375, gnl|panTro1|chr5 (112988920-112989073) | |
| 1238-1375, gnl|rheMac2|chr4 (153740908-153740755) | |
| 1238-1375, gnl|rn3|chr20 (44984656-44984504) | |
| 1238-1375, gnl|tetNig1|chr14 (2755664-2755817) | |
| 1238-1375, gnl|xenTro1|scaffold_174 (352681-352824) | |
| 1580-1907, gnl|bosTau2|chr4 (54113448-54113771) | |
| 1580-1907, gnl|Hg17|chr6 (110657833-110658141) | |
| 1580-1907, gnl|Mm7|chr10 (40620876-40620552) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| kid (0.259471) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mga (0.160205) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.259471) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mga (0.160205) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) |