Ss1.1-Thy1-THY010081F12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGGTGGCGCTGACGGCTGCTGCGTCGGGTCCTGTCCCGGGTAGCTCGGCGGCGGGCG CAGCGATGCTGCAACTGCGGGACTCGGTGGACTCGGCAGGCACGAGCCCCACCGCGCTGC TGGCGGCCGGCGAGGAGGTCGGGCCGGGCGGTGGCGGCAGTGGCGGCGGCGGCGGTGGCG GGCGGCCGGGGGTGGGTACGCCGCTGCGGCAGACGCTGTGGCCGCTCAGCATCCACGATC CCACGCGTCGCGCCCGCGTCAAGGAGTACTTCGTGTTCCGGCCCGGTACCATCGAGCAGG CGGTGGAGGAGATCCGCGTGGTCGTCCGGCCGGTGGAGGACGGCGACATCCAGGGGGTGT GGCTGCTGACCGAGGTCGATCATTGGAACAACGAGAAGGAGAGGCTGGTGCTCATCACCG ACCAGTCGCTGCTCATCTGCAAGTACGACTTCATCAGCCTGCAGTGCCAGCAGGTGGTCA GGGTAGCCCTGAGCGCGGTGGACACCATTTCCTACGGAGAATTCCAGTTTCCGCCGAAAT CGCTCAACAAGCGAGAAGGTGTTGGGGTTCGCATCCAGTGGGACAAGCAGAGCCGGCCTT CCTTCATAAGCAGATGGAACCCCTGGTCCACCAGCGTGCCCTACACCACGTTCACAGAGC ACCCGATGGCCGGTGTGGATGAGAAGACGGCCTCTCTGTGCCAGCTGGAAGACTTCAAAG CGCTGTTAATCCAGGCCGTCAAAAAGGCCCAGAAGGAGAGCCCTTGGCCGGGCCAGGCCG GGGGCGTGCTGGTCCTGGAGCGCCCGCTCCTCATCGAGACCTATGTGGGGCTCATGTCCT TCATTAGCAACGAGGCCAAGCTGGGCTACTCCATGACCAGAGGCAGAATCGGCTTCTAGA CGCCGGGCTGATGGGACTGGGGAGGGCGCGGTCCGGCCTGCGGCTGCTCCCGTGCCCCTC ACCCCTCGGGTCTGGGCGCGGTTGGCGTGACGAGTGAATGGTGTTCCTGGGCCTTGGGTA ACATGAACTGCAGACACTGCGAAAGGAATCGAGCTGTCGCCTCCTGGCCCGTATCCGTTT CCTAGAACCGGTTTGCTCCGTTGTTGCGTTGCTCCTGCCCTCTCCACCCGGCTTCCCGTG GTCCCTCCCGCCCCCGGCCCAGCGCATTAATAATAAACGCTGTGATTCCACTCGAAGGTC CCAGGCAGCGGCAGCGGCAGCCGTGCAGAGCGCTGCATCCAGGGGCTGCCTGAGCCCCCA GTGCCTGTATTGCAAGTATGTTTACAGCTGGTGTCAGATTTTGTATTTGGAGATTTCATC CGTCTTCTTAAAGCTGATATGAAAGAAGCCAGCGCGGCGGGCTCCATAAGAGACCGTCTG CGGTGGCAGCTCCTGAAGAACAGCTGCTTTTGCGTAAATGTTTGACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGGTGGCGCTGACGGCTGCTGCGTCGGGTCCTGTCCCGGGTAGCTCGGCGGCGGGCG CAGCGATGCTGCAACTGCGGGACTCGGTGGACTCGGCAGGCACGAGCCCCACCGCGCTGC TGGCGGCCGGCGAGGAGGTCGGGCCGGGCGGTGGCGGCAGTGGCGGCGGCGGCGGTGGCG GGCGGCCGGGGGTGGGTACGCCGCTGCGGCAGACGCTGTGGCCGCTCAGCATCCACGATC CCACGCGTCGCGCCCGCGTCAAGGAGTACTTCGTGTTCCGGCCCGGTACCATCGAGCAGG CGGTGGAGGAGATCCGCGTGGTCGTCCGGCCGGTGGAGGACGGCGACATCCAGGGGGTGT GGCTGCTGACCGAGGTCGATCATTGGAACAACGAGAAGGAGAGGCTGGTGCTCATCACCG ACCAGTCGCTGCTCATCTGCAAGTACGACTTCATCAGCCTGCAGTGCCAGCAGGTGGTCA GGGTAGCCCTGAGCGCGGTGGACACCATTTCCTACGGAGAATTCCAGTTTCCGCCGAAAT CGCTCAACAAGCGAGAAGGTGTTGGGGTTCGCATCCAGTGGGACAAGCAGAGCCGGCCTT CCTTCATAAGCAGATGGAACCCCTGGTCCACCAGCGTGCCCTACACCACGTTCACAGAGC ACCCGATGGCCGGTGTGGATGAGAAGACGGCCTCTCTGTGCCAGCTGGAAGACTTCAAAG CGCTGTTAATCCAGGCCGTCAAAAAGGCCCAGAAGGAGAGCCCTTGGCCGGGCCAGGCCG GGGGCGTGCTGGTCCTGGAGCGCCCGCTCCTCATCGAGACCTATGTGGGGCTCATGTCCT TCATTAGCAACGAGGCCAAGCTGGGCTACTCCATGACCAGAGGCAGAATCGGCTTCTAGA CGCCGGGCTGATGGGACTGGGGAGGGCGCGGTCCGGCCTGCGGCTGCTCCCGTGCCCCTC ACCCCTCGGGTCTGGGCGCGGTTGGCGTGACGAGTGAATGGTGTTCCTGGGCCTTGGGTA ACATGAACTGCAGACACTGCGAAAGGAATCGAGCTGTCGCCTCCTGGCCCGTATCCGTTT CCTAGAACCGGTTTGCTCCGTTGTTGCGTTGCTCCTGCCCTCTCCACCCGGCTTCCCGTG GTCCCTCCCGCCCCCGGCCCAGCGCATTAATAATAAACGCTGTGATTCCACTCGAAGGTC CCAGGCAGCGGCAGCGGCAGCCGTGCAGAGCGCTGCATCCAGGGGCTGCCTGAGCCCCCA GTGCCTGTATTGCAAGTATGTTTACAGCTGGTGTCAGATTTTGTATTTGGAGATTTCATC CGTCTTCTTAAAGCTGATATGAAAGAAGCCAGCGCGGCGGGCTCCATAAGAGACCGTCTG CGGTGGCAGCTCCTGAAGAACAGCTGCTTTTGCGTAAATGTTTGACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 787-903, - strand, RNAz p=0.527319 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 787-903, - strand, RNAz p=0.527319 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 90-281, gnl|bosTau2|chr16 (35545220-35545035) | |
| 90-281, gnl|echTel1|scaffold_175673 (4142-3978) | |
| 90-281, gnl|galGal2|chrUn (60095059-60095208) | |
| 90-281, gnl|Hg17|chr1 (3564818-3564994) | |
| 90-281, gnl|hg17|chr19 (62867485-62867622) | |
| 90-281, gnl|mm7|chr4 (153150148-153149992) | |
| 90-281, gnl|Mm7|chr4 (153150147-153149989) | |
| 90-281, gnl|panTro1|chr20 (60605542-60605679) | |
| 90-281, gnl|rheMac2|chr1 (6585468-6585642) | |
| 90-281, gnl|tetNig1|chr9 (1433953-1433847) | |
| 362-551, gnl|bosTau2|chr16 (35544754-35544563) | |
| 362-551, gnl|Hg17|chr1 (3565396-3565611) | |
| 362-551, gnl|Mm7|chr4 (153149817-153149626) | |
| 692-903, gnl|bosTau2|chr16 (35542922-35542712) | |
| 692-903, gnl|canFam2|chr5 (61159466-61159694) | |
| 692-903, gnl|canFam2|chr5 (61159482-61159694) | |
| 692-903, gnl|danRer3|chr8 (41534922-41534711) | |
| 692-903, gnl|danRer3|chr8 (41623442-41623249) | |
| 692-903, gnl|dasNov1|scaffold_173092 (3444-3217) | |
| 692-903, gnl|dasNov1|scaffold_173092 (3431-3215) | |
| 692-903, gnl|echTel1|scaffold_175673 (1585-1345) | |
| 692-903, gnl|echTel1|scaffold_175673 (1565-1353) | |
| 692-903, gnl|fr1|chrUn (70385599-70385829) | |
| 692-903, gnl|fr1|chrUn (70385619-70385810) | |
| 692-903, gnl|galGal2|chr21 (895402-895190) | |
| 692-903, gnl|hg17|chr1 (3568111-3568350) | |
| 692-903, gnl|Hg17|chr1 (3568118-3568328) | |
| 692-903, gnl|hg17|chr19 (62868021-62868238) | |
| 692-903, gnl|loxAfr1|scaffold_70816 (64-297) | |
| 692-903, gnl|loxAfr1|scaffold_70816 (83-289) | |
| 692-903, gnl|mm7|chr4 (153148127-153147896) | |
| 692-903, gnl|mm7|chr4 (153148109-153147898) | |
| 692-903, gnl|Mm7|chr4 (153148119-153147908) | |
| 692-903, gnl|monDom2|scaffold_78 (6872688-6872449) | |
| 692-903, gnl|oryCun1|scaffold_23264 (662-886) | |
| 692-903, gnl|oryCun1|scaffold_23264 (671-879) | |
| 692-903, gnl|panTro1|chr1 (3420058-3420297) | |
| 692-903, gnl|panTro1|chr20 (60606079-60606296) | |
| 692-903, gnl|rheMac2|chr1 (6588623-6588863) | |
| 692-903, gnl|rheMac2|chr19 (63475255-63475468) | |
| 692-903, gnl|rn3|chr11 (77534944-77534732) | |
| 692-903, gnl|tetNig1|chr9 (1431593-1431381) | |
| 692-903, gnl|tetNig1|chr9 (1431573-1431381) | |
| 692-903, gnl|xenTro1|scaffold_593 (374108-374321) | |
| 692-903, gnl|xenTro1|scaffold_593 (374127-374331) | |
| 1219-1420, gnl|bosTau2|chr16 (35542396-35542191) | |
| 1219-1420, gnl|canFam2|chr5 (61159786-61160239) | |
| 1219-1420, gnl|hg17|chr1 (3568490-3568932) | |
| 1219-1420, gnl|Hg17|chr1 (3568707-3568910) | |
| 1219-1420, gnl|loxAfr1|scaffold_70816 (370-841) | |
| 1219-1420, gnl|mm7|chr4 (153147821-153147441) | |
| 1219-1420, gnl|Mm7|chr4 (153147665-153147461) | |
| 1219-1420, gnl|monDom2|scaffold_78 (6872346-6871863) | |
| 1219-1420, gnl|panTro1|chr1 (3420417-3420859) | |
| 1219-1420, gnl|rheMac2|chr1 (6588985-6589419) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 90-281, gnl|bosTau2|chr16 (35545220-35545035) | |
| 90-281, gnl|echTel1|scaffold_175673 (4142-3978) | |
| 90-281, gnl|galGal2|chrUn (60095059-60095208) | |
| 90-281, gnl|Hg17|chr1 (3564818-3564994) | |
| 90-281, gnl|hg17|chr19 (62867485-62867622) | |
| 90-281, gnl|mm7|chr4 (153150148-153149992) | |
| 90-281, gnl|Mm7|chr4 (153150147-153149989) | |
| 90-281, gnl|panTro1|chr20 (60605542-60605679) | |
| 90-281, gnl|rheMac2|chr1 (6585468-6585642) | |
| 90-281, gnl|tetNig1|chr9 (1433953-1433847) | |
| 362-551, gnl|bosTau2|chr16 (35544754-35544563) | |
| 362-551, gnl|Hg17|chr1 (3565396-3565611) | |
| 362-551, gnl|Mm7|chr4 (153149817-153149626) | |
| 692-903, gnl|bosTau2|chr16 (35542922-35542712) | |
| 692-903, gnl|canFam2|chr5 (61159466-61159694) | |
| 692-903, gnl|canFam2|chr5 (61159482-61159694) | |
| 692-903, gnl|danRer3|chr8 (41534922-41534711) | |
| 692-903, gnl|danRer3|chr8 (41623442-41623249) | |
| 692-903, gnl|dasNov1|scaffold_173092 (3444-3217) | |
| 692-903, gnl|dasNov1|scaffold_173092 (3431-3215) | |
| 692-903, gnl|echTel1|scaffold_175673 (1585-1345) | |
| 692-903, gnl|echTel1|scaffold_175673 (1565-1353) | |
| 692-903, gnl|fr1|chrUn (70385599-70385829) | |
| 692-903, gnl|fr1|chrUn (70385619-70385810) | |
| 692-903, gnl|galGal2|chr21 (895402-895190) | |
| 692-903, gnl|hg17|chr1 (3568111-3568350) | |
| 692-903, gnl|Hg17|chr1 (3568118-3568328) | |
| 692-903, gnl|hg17|chr19 (62868021-62868238) | |
| 692-903, gnl|loxAfr1|scaffold_70816 (64-297) | |
| 692-903, gnl|loxAfr1|scaffold_70816 (83-289) | |
| 692-903, gnl|mm7|chr4 (153148127-153147896) | |
| 692-903, gnl|mm7|chr4 (153148109-153147898) | |
| 692-903, gnl|Mm7|chr4 (153148119-153147908) | |
| 692-903, gnl|monDom2|scaffold_78 (6872688-6872449) | |
| 692-903, gnl|oryCun1|scaffold_23264 (662-886) | |
| 692-903, gnl|oryCun1|scaffold_23264 (671-879) | |
| 692-903, gnl|panTro1|chr1 (3420058-3420297) | |
| 692-903, gnl|panTro1|chr20 (60606079-60606296) | |
| 692-903, gnl|rheMac2|chr1 (6588623-6588863) | |
| 692-903, gnl|rheMac2|chr19 (63475255-63475468) | |
| 692-903, gnl|rn3|chr11 (77534944-77534732) | |
| 692-903, gnl|tetNig1|chr9 (1431593-1431381) | |
| 692-903, gnl|tetNig1|chr9 (1431573-1431381) | |
| 692-903, gnl|xenTro1|scaffold_593 (374108-374321) | |
| 692-903, gnl|xenTro1|scaffold_593 (374127-374331) | |
| 1219-1420, gnl|bosTau2|chr16 (35542396-35542191) | |
| 1219-1420, gnl|canFam2|chr5 (61159786-61160239) | |
| 1219-1420, gnl|hg17|chr1 (3568490-3568932) | |
| 1219-1420, gnl|Hg17|chr1 (3568707-3568910) | |
| 1219-1420, gnl|loxAfr1|scaffold_70816 (370-841) | |
| 1219-1420, gnl|mm7|chr4 (153147821-153147441) | |
| 1219-1420, gnl|Mm7|chr4 (153147665-153147461) | |
| 1219-1420, gnl|monDom2|scaffold_78 (6872346-6871863) | |
| 1219-1420, gnl|panTro1|chr1 (3420417-3420859) | |
| 1219-1420, gnl|rheMac2|chr1 (6588985-6589419) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| col (0.195008) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| col (0.195008) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| eje (0.0988338) |