Ss1.1-Thy1-THY010083H07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTAGGGACCCCGGAAGTGGCTGCTAGGGGGAATTACTGCGGACTCTGACTCTTGGCTTG CTATGGGTTGCGACGGAGGCACAATCCCCAAGAGGCACGAGCTGGTGAAGGGGCCGAAGA AGGTTGAGAAGGTTGACAAAGATGCTGAATTAGTGGCCCAGTGGAACTACTGTACTTTAA GTCAAGAAATATTAAGGAGGCCAATAGTTGCTTGTGAACTTGGCAGACTTTACAACAAAG ATGCCGTCATTGAGTTTTTATTGGACAAATCTTCTGAAAAGGCTCTCGGGAAGGCAGCAT CTCATATTAAAAGCATTAAGAATGTGACAGAACTAAGGCTTTCCGATAATCCTGCCTGGG AAGGAGACAAAGGAAGCACCAAAGGTGACAAACATGATGACCTCCAGCGGGCACGTTTCA TCTGCCCTGTCGTGGGCTTGGAGATGAATGGCCGACACAGGTTTTGCTACCTGCGGTGCT GTGGTTGCGTGTTTTCGGAACGAGCCCTGAAGGAGATAAAAGCAGAAGTTTGTCACACAT GCGGGGCCGCCTTCCAGGAGGACGATGTCATCGTGCTCAACGGCACCAAGGAGGATGTGG CGATGCTGCAGACGAGGATGGAGGAGCGGCGGCTGCGAGCCAAGCTGGGGAAGAAAACAA AGAAACCCAAGGCAGCAGAGTCTGTCTCAAAATCAGACATCAGTGAAGAAGCCCCAGGAC CATCAAAAATGAAGGCAGGGAAGCCTGAAGAAACCAGCCTTGATTCTCGAGAGAAGAAAA CCAGCTCGGCTCCCAGAAGTGCAGCACATGGGAGCTCTTCTGGAAAAGCCGGGAAGCCTG TGTGTGGAGCCCCAAAGAGGTCCATCGCGGACAGCGGAGAGTCGGAAGCTTACAAGTCCC TTTTCACGACCCACAGCTCCGCCAAGCGCTCCAAGGAGGAGTCGGCCCACTGGGTCACCC ACACGTCCTACTGCTTCTGAAGCCCGCCCGCCGCCCCCAAGCCCTGTGCTGGCGGCTCTG TCTCCTCGGTTGCAGAGTCACGCCCCCTAAAGATTGGAGCCGGTGGGGACGCAGGGGGAC CTGTAGGCCCCTGCCCTCGCCTCCCTGGGGCCCACGCTTGCCTCCGCCTGCCGGGCGCTT GGACCTTCCCACGGCCCCGAGAGCGTGTTGGCTGCACTGTTTGTGCTTAAAGTAATTAAA GATTCCAGATTCCTCAGGGGTGTGTGGTCAGCTCATTTTGATGAAAACGCTCATGGTTTT GCTGCCAGCGGTTAATTACTGAAATAAGCCGGGTGAAACTGAACTTGAGAAAGGACGGTT TCGAGTGCCTCCCGCCTGCAGGGCTGTGGGCGGCGCGGCTGCGCCAGAGCAGAGCCACTG GGTCGGTTGAGTGCTTGGGGGTTTCTTGCTTTATGGCTTTGATGGCAGAGGAGATTTAGT TGGGCATCTGAGGATTTGGTACAAAAATAAAGTCGGTCTAAAGTCTCAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTAGGGACCCCGGAAGTGGCTGCTAGGGGGAATTACTGCGGACTCTGACTCTTGGCTTG CTATGGGTTGCGACGGAGGCACAATCCCCAAGAGGCACGAGCTGGTGAAGGGGCCGAAGA AGGTTGAGAAGGTTGACAAAGATGCTGAATTAGTGGCCCAGTGGAACTACTGTACTTTAA GTCAAGAAATATTAAGGAGGCCAATAGTTGCTTGTGAACTTGGCAGACTTTACAACAAAG ATGCCGTCATTGAGTTTTTATTGGACAAATCTTCTGAAAAGGCTCTCGGGAAGGCAGCAT CTCATATTAAAAGCATTAAGAATGTGACAGAACTAAGGCTTTCCGATAATCCTGCCTGGG AAGGAGACAAAGGAAGCACCAAAGGTGACAAACATGATGACCTCCAGCGGGCACGTTTCA TCTGCCCTGTCGTGGGCTTGGAGATGAATGGCCGACACAGGTTTTGCTACCTGCGGTGCT GTGGTTGCGTGTTTTCGGAACGAGCCCTGAAGGAGATAAAAGCAGAAGTTTGTCACACAT GCGGGGCCGCCTTCCAGGAGGACGATGTCATCGTGCTCAACGGCACCAAGGAGGATGTGG CGATGCTGCAGACGAGGATGGAGGAGCGGCGGCTGCGAGCCAAGCTGGGGAAGAAAACAA AGAAACCCAAGGCAGCAGAGTCTGTCTCAAAATCAGACATCAGTGAAGAAGCCCCAGGAC CATCAAAAATGAAGGCAGGGAAGCCTGAAGAAACCAGCCTTGATTCTCGAGAGAAGAAAA CCAGCTCGGCTCCCAGAAGTGCAGCACATGGGAGCTCTTCTGGAAAAGCCGGGAAGCCTG TGTGTGGAGCCCCAAAGAGGTCCATCGCGGACAGCGGAGAGTCGGAAGCTTACAAGTCCC TTTTCACGACCCACAGCTCCGCCAAGCGCTCCAAGGAGGAGTCGGCCCACTGGGTCACCC ACACGTCCTACTGCTTCTGAAGCCCGCCCGCCGCCCCCAAGCCCTGTGCTGGCGGCTCTG TCTCCTCGGTTGCAGAGTCACGCCCCCTAAAGATTGGAGCCGGTGGGGACGCAGGGGGAC CTGTAGGCCCCTGCCCTCGCCTCCCTGGGGCCCACGCTTGCCTCCGCCTGCCGGGCGCTT GGACCTTCCCACGGCCCCGAGAGCGTGTTGGCTGCACTGTTTGTGCTTAAAGTAATTAAA GATTCCAGATTCCTCAGGGGTGTGTGGTCAGCTCATTTTGATGAAAACGCTCATGGTTTT GCTGCCAGCGGTTAATTACTGAAATAAGCCGGGTGAAACTGAACTTGAGAAAGGACGGTT TCGAGTGCCTCCCGCCTGCAGGGCTGTGGGCGGCGCGGCTGCGCCAGAGCAGAGCCACTG GGTCGGTTGAGTGCTTGGGGGTTTCTTGCTTTATGGCTTTGATGGCAGAGGAGATTTAGT TGGGCATCTGAGGATTTGGTACAAAAATAAAGTCGGTCTAAAGTCTCAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 30-133, gnl|bosTau2|chr13 (40887080-40887187) | |
| 30-133, gnl|Hg17|chr20 (54477111-54477231) | |
| 30-133, gnl|Mm7|chr2 (172233256-172233395) | |
| 319-462, gnl|bosTau2|chr13 (40880720-40880577) | |
| 319-462, gnl|canFam2|chr24 (44654481-44654662) | |
| 319-462, gnl|echTel1|scaffold_104495 (4482-4660) | |
| 319-462, gnl|fr1|chrUn (206829466-206829613) | |
| 319-462, gnl|galGal2|chr20 (11508351-11508182) | |
| 319-462, gnl|hg17|chr20 (54485430-54485611) | |
| 319-462, gnl|Hg17|chr20 (54485446-54485589) | |
| 319-462, gnl|loxAfr1|scaffold_2284 (19195-19014) | |
| 319-462, gnl|mm7|chr2 (172239258-172239421) | |
| 319-462, gnl|Mm7|chr2 (172239274-172239417) | |
| 319-462, gnl|monDom2|scaffold_1 (169745638-169745812) | |
| 319-462, gnl|oryCun1|scaffold_200828 (35037-35218) | |
| 319-462, gnl|panTro1|chr21 (57403708-57403889) | |
| 319-462, gnl|rheMac2|chr10 (8068125-8067946) | |
| 319-462, gnl|rn3|chr3 (163263378-163263555) | |
| 540-653, gnl|bosTau2|chr13 (40850545-40850432) | |
| 540-653, gnl|canFam2|chr24 (44682613-44682724) | |
| 540-653, gnl|danRer3|chr16 (15243712-15243828) | |
| 540-653, gnl|dasNov1|scaffold_1805 (11989-11878) | |
| 540-653, gnl|echTel1|scaffold_54691 (850-739) | |
| 540-653, gnl|fr1|chrUn (206834404-206834512) | |
| 540-653, gnl|galGal2|chr20 (11493755-11493644) | |
| 540-653, gnl|hg17|chr20 (54521779-54521890) | |
| 540-653, gnl|Hg17|chr20 (54521778-54521891) | |
| 540-653, gnl|mm7|chr2 (172255832-172255943) | |
| 540-653, gnl|Mm7|chr2 (172255831-172255944) | |
| 540-653, gnl|monDom2|scaffold_1 (169803048-169803159) | |
| 540-653, gnl|oryCun1|scaffold_200828 (54418-54529) | |
| 540-653, gnl|panTro1|chr21 (57443108-57443219) | |
| 540-653, gnl|rheMac2|chr10 (8029437-8029326) | |
| 540-653, gnl|rn3|chr3 (163279281-163279392) | |
| 540-653, gnl|tetNig1|chrUn_random (106586947-106586839) | |
| 848-1474, gnl|bosTau2|chr13 (40846621-40845996) | |
| 848-1474, gnl|Hg17|chr20 (54526575-54527332) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-133, gnl|bosTau2|chr13 (40887080-40887187) | |
| 30-133, gnl|Hg17|chr20 (54477111-54477231) | |
| 30-133, gnl|Mm7|chr2 (172233256-172233395) | |
| 319-462, gnl|bosTau2|chr13 (40880720-40880577) | |
| 319-462, gnl|canFam2|chr24 (44654481-44654662) | |
| 319-462, gnl|echTel1|scaffold_104495 (4482-4660) | |
| 319-462, gnl|fr1|chrUn (206829466-206829613) | |
| 319-462, gnl|galGal2|chr20 (11508351-11508182) | |
| 319-462, gnl|hg17|chr20 (54485430-54485611) | |
| 319-462, gnl|Hg17|chr20 (54485446-54485589) | |
| 319-462, gnl|loxAfr1|scaffold_2284 (19195-19014) | |
| 319-462, gnl|mm7|chr2 (172239258-172239421) | |
| 319-462, gnl|Mm7|chr2 (172239274-172239417) | |
| 319-462, gnl|monDom2|scaffold_1 (169745638-169745812) | |
| 319-462, gnl|oryCun1|scaffold_200828 (35037-35218) | |
| 319-462, gnl|panTro1|chr21 (57403708-57403889) | |
| 319-462, gnl|rheMac2|chr10 (8068125-8067946) | |
| 319-462, gnl|rn3|chr3 (163263378-163263555) | |
| 540-653, gnl|bosTau2|chr13 (40850545-40850432) | |
| 540-653, gnl|canFam2|chr24 (44682613-44682724) | |
| 540-653, gnl|danRer3|chr16 (15243712-15243828) | |
| 540-653, gnl|dasNov1|scaffold_1805 (11989-11878) | |
| 540-653, gnl|echTel1|scaffold_54691 (850-739) | |
| 540-653, gnl|fr1|chrUn (206834404-206834512) | |
| 540-653, gnl|galGal2|chr20 (11493755-11493644) | |
| 540-653, gnl|hg17|chr20 (54521779-54521890) | |
| 540-653, gnl|Hg17|chr20 (54521778-54521891) | |
| 540-653, gnl|mm7|chr2 (172255832-172255943) | |
| 540-653, gnl|Mm7|chr2 (172255831-172255944) | |
| 540-653, gnl|monDom2|scaffold_1 (169803048-169803159) | |
| 540-653, gnl|oryCun1|scaffold_200828 (54418-54529) | |
| 540-653, gnl|panTro1|chr21 (57443108-57443219) | |
| 540-653, gnl|rheMac2|chr10 (8029437-8029326) | |
| 540-653, gnl|rn3|chr3 (163279281-163279392) | |
| 540-653, gnl|tetNig1|chrUn_random (106586947-106586839) | |
| 848-1474, gnl|bosTau2|chr13 (40846621-40845996) | |
| 848-1474, gnl|Hg17|chr20 (54526575-54527332) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| eep (0.367692) | |
| cje (0.330469) | |
| jej (0.296765) | |
| cga (0.279096) | |
| ece (0.229305) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| cje (0.330469) | |
| jej (0.296765) | |
| cga (0.279096) | |
| ece (0.229305) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| cty (0.10408) |