Ss1.1-Thy1-THY010084C01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTAAGCTGTTTTCCTAATTAGGGAAGGGTCCCGCGCGGGCGGGGCGTGGAGCTGAGCTC GTCCCGGTGTGCGCTTGCGCCGAGCGCCGGGACAGGGCGTGTTCCTGGTTCGGGTGCCGA ATTCGCACCGACCGAGTGCATCGCTCGCCGCCGGAGTGAGCCCTGCGGAATCCTGTCATT TCCACGCCCAACCTGTTAGGTGCTGCCTTTCACAGTCATGTCCAAGTCTCTGAAAAAGTT GGTGGAGGAGAGCAGAGAGAAGAACCAGCCGGAAGTGGACATGAGTGACCGGGGCATCTC CAACATGCTGGACGTCAACGGCTTGTTCACCCTGGCCCACATCACACAGCTGGTCCTCAG CCACAACAAGCTGACAACTGTGCCACCCAACATAGCAGAACTGAAGAATTTGGAAGTGCT CAACTTTTTTAACAACCAGATTGAGGAGCTGCCCACGCAGATCAGCAGCCTTCAGAAACT CAAACACCTGAACCTTGGCATGAATAGACTAAACACGCTGCCGCGAGGATTTGGATCCCT GCCAGCTCTGGAGGTCCTTGACCTGACTTATAACAACTTGAGTGAAAATTCTCTTCCTGG AAACTTCTTCTACCTGACCACCCTGCGTGCACTCTATCTCAGTGACAACGATTTTGAAAT CCTGCCGCCTGATATTGGGAAGCTCACCAAGTTGCAGATACTCAGCCTCAGGGATAACGA CCTGATCTCGCTGCCTAAGGAAATCGGGGAGCTTACTCAGCTTAAGGAGCTCCACATTCA GGGGAACCGCCTGACCGTGCTGCCCCCAGAACTAGGAAACTTGGATTTAACTGGTCAGAA GCAGATATTCAAAGCAGAGAACAACCCCTGGGTTACCCCCATTGCTGACCAATTCCAGCT TGGCGTGTCCCATGTTTTTGAATATATCCGTTCTGAGACCTACAAATACCTCTACGGCAG ACACATGCAGGCAAACCCAGAACCGCCGAAGAAAAATAATGACAAATCGAAAAAGATCAG CCGGAAACCCCTGACAGCCAAGAACAAATAAGGGGTCCGCCATGGGCTGGACTTCTGGCC GCTTCTCTCATCATTCTGTTCTCTCTCATTCTACCACACATGTGAATACAGCATGCGTGT GGGTTTTTTTTTTTTTTTTATTTTGTTTTCTCTTTCGAGTGTTTACCACCTTCCCTTGTA AATTCTTTTTGTAGGTAGTAGATTTTTTATAACTTCTTCCAACTCTTTCCATTTGTTTCC TTGAAATTGCCCCAGGCAGGAAACAAAGCTCTAATTCAGCGGCAAATTGCACATGAGCAC AGCTTTCAGCTTCTTGAATAGAGGTTCCCAGAGTTACTTATTATGAAAAGAAGAATTAAA ATCATGTAATCATTTAAATGTCACCGTTCACACTATTCACCCTCCCGTTTATTCATTTAA CTCACCACTTGTGCTTTATTCAAAGCTTTCCTTCACTCCTGAGATATTATGTGAACTTGC AAATGATTTTAATAAAATCTCGAATTTGTATCACCTGTTGCGTCTTGAATAAAAAAAAAA AATCTGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTAAGCTGTTTTCCTAATTAGGGAAGGGTCCCGCGCGGGCGGGGCGTGGAGCTGAGCTC GTCCCGGTGTGCGCTTGCGCCGAGCGCCGGGACAGGGCGTGTTCCTGGTTCGGGTGCCGA ATTCGCACCGACCGAGTGCATCGCTCGCCGCCGGAGTGAGCCCTGCGGAATCCTGTCATT TCCACGCCCAACCTGTTAGGTGCTGCCTTTCACAGTCATGTCCAAGTCTCTGAAAAAGTT GGTGGAGGAGAGCAGAGAGAAGAACCAGCCGGAAGTGGACATGAGTGACCGGGGCATCTC CAACATGCTGGACGTCAACGGCTTGTTCACCCTGGCCCACATCACACAGCTGGTCCTCAG CCACAACAAGCTGACAACTGTGCCACCCAACATAGCAGAACTGAAGAATTTGGAAGTGCT CAACTTTTTTAACAACCAGATTGAGGAGCTGCCCACGCAGATCAGCAGCCTTCAGAAACT CAAACACCTGAACCTTGGCATGAATAGACTAAACACGCTGCCGCGAGGATTTGGATCCCT GCCAGCTCTGGAGGTCCTTGACCTGACTTATAACAACTTGAGTGAAAATTCTCTTCCTGG AAACTTCTTCTACCTGACCACCCTGCGTGCACTCTATCTCAGTGACAACGATTTTGAAAT CCTGCCGCCTGATATTGGGAAGCTCACCAAGTTGCAGATACTCAGCCTCAGGGATAACGA CCTGATCTCGCTGCCTAAGGAAATCGGGGAGCTTACTCAGCTTAAGGAGCTCCACATTCA GGGGAACCGCCTGACCGTGCTGCCCCCAGAACTAGGAAACTTGGATTTAACTGGTCAGAA GCAGATATTCAAAGCAGAGAACAACCCCTGGGTTACCCCCATTGCTGACCAATTCCAGCT TGGCGTGTCCCATGTTTTTGAATATATCCGTTCTGAGACCTACAAATACCTCTACGGCAG ACACATGCAGGCAAACCCAGAACCGCCGAAGAAAAATAATGACAAATCGAAAAAGATCAG CCGGAAACCCCTGACAGCCAAGAACAAATAAGGGGTCCGCCATGGGCTGGACTTCTGGCC GCTTCTCTCATCATTCTGTTCTCTCTCATTCTACCACACATGTGAATACAGCATGCGTGT GGGTTTTTTTTTTTTTTTTATTTTGTTTTCTCTTTCGAGTGTTTACCACCTTCCCTTGTA AATTCTTTTTGTAGGTAGTAGATTTTTTATAACTTCTTCCAACTCTTTCCATTTGTTTCC TTGAAATTGCCCCAGGCAGGAAACAAAGCTCTAATTCAGCGGCAAATTGCACATGAGCAC AGCTTTCAGCTTCTTGAATAGAGGTTCCCAGAGTTACTTATTATGAAAAGAAGAATTAAA ATCATGTAATCATTTAAATGTCACCGTTCACACTATTCACCCTCCCGTTTATTCATTTAA CTCACCACTTGTGCTTTATTCAAAGCTTTCCTTCACTCCTGAGATATTATGTGAACTTGC AAATGATTTTAATAAAATCTCGAATTTGTATCACCTGTTGCGTCTTGAATAAAAAAAAAA AATCTGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 215-326, + strand, RNAz p=0.520717 | |
| 831-948, - strand, RNAz p=0.656443 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 215-326, + strand, RNAz p=0.520717 | |
| 831-948, - strand, RNAz p=0.656443 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_012425, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr4 (2682380-2682224) | |
| 1-157, gnl|canFam2|chr2 (22885199-22884660) | |
| 1-157, gnl|echTel1|scaffold_315448 (39524-40115) | |
| 1-157, gnl|hg17|chr10 (16899164-16899719) | |
| 1-157, gnl|Hg17|chr10 (16899511-16899361) | |
| 1-157, gnl|loxAfr1|scaffold_10247 (13933-14515) | |
| 1-157, gnl|mm7|chr2 (13210239-13210753) | |
| 1-157, gnl|Mm7|chr2 (13210558-13210405) | |
| 1-157, gnl|monDom2|scaffold_7 (52771418-52770852) | |
| 1-157, gnl|oryCun1|scaffold_208421 (51825-51254) | |
| 1-157, gnl|panTro1|chr8 (17405821-17406389) | |
| 1-157, gnl|rheMac2|chr9 (45474288-45474867) | |
| 1-157, gnl|rn3|chr17 (87548865-87549382) | |
| 215-326, gnl|bosTau2|chr4 (2681949-2681838) | |
| 215-326, gnl|canFam2|chr2 (22885399-22885265) | |
| 215-326, gnl|echTel1|scaffold_315448 (39302-39441) | |
| 215-326, gnl|fr1|chrUn (326294298-326294410) | |
| 215-326, gnl|galGal2|chr2 (19303054-19302940) | |
| 215-326, gnl|hg17|chr10 (16898949-16899087) | |
| 215-326, gnl|Hg17|chr10 (16899089-16898978) | |
| 215-326, gnl|loxAfr1|scaffold_10247 (13712-13851) | |
| 215-326, gnl|mm7|chr2 (13210049-13210178) | |
| 215-326, gnl|Mm7|chr2 (13210180-13210069) | |
| 215-326, gnl|monDom2|scaffold_7 (52771620-52771481) | |
| 215-326, gnl|oryCun1|scaffold_208421 (52038-51899) | |
| 215-326, gnl|panTro1|chr8 (17405606-17405744) | |
| 215-326, gnl|rheMac2|chr9 (45474064-45474211) | |
| 215-326, gnl|rn3|chr17 (87548684-87548812) | |
| 215-326, gnl|tetNig1|chrUn_random (52029136-52029249) | |
| 813-948, gnl|bosTau2|chr13 (20347657-20347522) | |
| 813-948, gnl|canFam2|chr2 (22994670-22994492) | |
| 813-948, gnl|danRer3|chrNA (172170426-172170601) | |
| 813-948, gnl|dasNov1|scaffold_57977 (5254-5082) | |
| 813-948, gnl|echTel1|scaffold_299963 (41851-42022) | |
| 813-948, gnl|fr1|chrUn (124874372-124874533) | |
| 813-948, gnl|galGal2|chr2 (19341929-19341755) | |
| 813-948, gnl|hg17|chr10 (16777008-16777182) | |
| 813-948, gnl|Hg17|chr10 (16777162-16777028) | |
| 813-948, gnl|loxAfr1|scaffold_8299 (54605-54779) | |
| 813-948, gnl|mm7|chr2 (13109136-13109310) | |
| 813-948, gnl|Mm7|chr2 (13109291-13109156) | |
| 813-948, gnl|monDom2|scaffold_7 (52891441-52891265) | |
| 813-948, gnl|panTro1|chr8 (17276589-17276763) | |
| 813-948, gnl|rheMac2|chr9 (16973086-16973260) | |
| 813-948, gnl|rn3|chr17 (87445534-87445708) | |
| 813-948, gnl|tetNig1|chrUn_random (52026799-52026940) | |
| 813-948, gnl|xenTro1|scaffold_553 (533873-534032) | |
| 949-1561, gnl|bosTau2|chr13 (20246643-20246043) | |
| 949-1561, gnl|Hg17|chr10 (16675501-16674882) | |
| 949-1561, gnl|Mm7|chr2 (13016765-13016132) | |
| 957-1076, gnl|bosTau2|chr11 (15533628-15533746) | |
| 957-1076, gnl|Hg17|chr10 (16675493-16675350) | |
| 957-1076, gnl|Mm7|chr2 (13016757-13016638) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr4 (2682380-2682224) | |
| 1-157, gnl|canFam2|chr2 (22885199-22884660) | |
| 1-157, gnl|echTel1|scaffold_315448 (39524-40115) | |
| 1-157, gnl|hg17|chr10 (16899164-16899719) | |
| 1-157, gnl|Hg17|chr10 (16899511-16899361) | |
| 1-157, gnl|loxAfr1|scaffold_10247 (13933-14515) | |
| 1-157, gnl|mm7|chr2 (13210239-13210753) | |
| 1-157, gnl|Mm7|chr2 (13210558-13210405) | |
| 1-157, gnl|monDom2|scaffold_7 (52771418-52770852) | |
| 1-157, gnl|oryCun1|scaffold_208421 (51825-51254) | |
| 1-157, gnl|panTro1|chr8 (17405821-17406389) | |
| 1-157, gnl|rheMac2|chr9 (45474288-45474867) | |
| 1-157, gnl|rn3|chr17 (87548865-87549382) | |
| 215-326, gnl|bosTau2|chr4 (2681949-2681838) | |
| 215-326, gnl|canFam2|chr2 (22885399-22885265) | |
| 215-326, gnl|echTel1|scaffold_315448 (39302-39441) | |
| 215-326, gnl|fr1|chrUn (326294298-326294410) | |
| 215-326, gnl|galGal2|chr2 (19303054-19302940) | |
| 215-326, gnl|hg17|chr10 (16898949-16899087) | |
| 215-326, gnl|Hg17|chr10 (16899089-16898978) | |
| 215-326, gnl|loxAfr1|scaffold_10247 (13712-13851) | |
| 215-326, gnl|mm7|chr2 (13210049-13210178) | |
| 215-326, gnl|Mm7|chr2 (13210180-13210069) | |
| 215-326, gnl|monDom2|scaffold_7 (52771620-52771481) | |
| 215-326, gnl|oryCun1|scaffold_208421 (52038-51899) | |
| 215-326, gnl|panTro1|chr8 (17405606-17405744) | |
| 215-326, gnl|rheMac2|chr9 (45474064-45474211) | |
| 215-326, gnl|rn3|chr17 (87548684-87548812) | |
| 215-326, gnl|tetNig1|chrUn_random (52029136-52029249) | |
| 813-948, gnl|bosTau2|chr13 (20347657-20347522) | |
| 813-948, gnl|canFam2|chr2 (22994670-22994492) | |
| 813-948, gnl|danRer3|chrNA (172170426-172170601) | |
| 813-948, gnl|dasNov1|scaffold_57977 (5254-5082) | |
| 813-948, gnl|echTel1|scaffold_299963 (41851-42022) | |
| 813-948, gnl|fr1|chrUn (124874372-124874533) | |
| 813-948, gnl|galGal2|chr2 (19341929-19341755) | |
| 813-948, gnl|hg17|chr10 (16777008-16777182) | |
| 813-948, gnl|Hg17|chr10 (16777162-16777028) | |
| 813-948, gnl|loxAfr1|scaffold_8299 (54605-54779) | |
| 813-948, gnl|mm7|chr2 (13109136-13109310) | |
| 813-948, gnl|Mm7|chr2 (13109291-13109156) | |
| 813-948, gnl|monDom2|scaffold_7 (52891441-52891265) | |
| 813-948, gnl|panTro1|chr8 (17276589-17276763) | |
| 813-948, gnl|rheMac2|chr9 (16973086-16973260) | |
| 813-948, gnl|rn3|chr17 (87445534-87445708) | |
| 813-948, gnl|tetNig1|chrUn_random (52026799-52026940) | |
| 813-948, gnl|xenTro1|scaffold_553 (533873-534032) | |
| 949-1561, gnl|bosTau2|chr13 (20246643-20246043) | |
| 949-1561, gnl|Hg17|chr10 (16675501-16674882) | |
| 949-1561, gnl|Mm7|chr2 (13016765-13016132) | |
| 957-1076, gnl|bosTau2|chr11 (15533628-15533746) | |
| 957-1076, gnl|Hg17|chr10 (16675493-16675350) | |
| 957-1076, gnl|Mm7|chr2 (13016757-13016638) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| rec (1.03842) | |
| nlu (0.766724) | |
| cut (0.679694) | |
| aor (0.585823) | |
| sag (0.548145) | |
| fat (0.442282) | |
| amn (0.417711) | |
| thg (0.380373) | |
| mgm (0.360685) | |
| cbl (0.344392) | |
| spc (0.340097) | |
| sme (0.305437) | |
| pla (0.267344) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| hea (0.204499) | |
| gul (0.177588) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| cst (0.140036) | |
| che (0.136314) | |
| lyg (0.133103) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (1.03842) | |
| nlu (0.766724) | |
| cut (0.679694) | |
| aor (0.585823) | |
| sag (0.548145) | |
| fat (0.442282) | |
| amn (0.417711) | |
| thg (0.380373) | |
| mgm (0.360685) | |
| cbl (0.344392) | |
| spc (0.340097) | |
| sme (0.305437) | |
| pla (0.267344) | |
| ova (0.258264) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| hea (0.204499) | |
| gul (0.177588) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| cst (0.140036) | |
| che (0.136314) | |
| lyg (0.133103) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) | |
| eje (0.0988338) |