Non-Coding RNA Search

Ss1.1-Thy1-THY010085C01.5

Sequence:


               
               CTTCCCTCCCCGACCCGGGCCGCGCAGCCATCCCCCTGCCTCTGTCTGGCCGTCCTTCCT
CCCCCTCCTTTCGCACCCAGACCTCTTTGTACCGCACCCCCCGGGGACCCCTGCGCCCCT
CCCTTCCCGGCTGGCCGCATGGACCGTCCCGCAGGCCGCTGATGCTGCCCGCAGCGAGGT
GGCCCGGACCGCAGTGCCCCGAAAAAGCTCTCATGGTACCAAGTGATAGGTCGGCCTTCC
TGTGACACGGGGACGCCAGATCTTCTGAGAAGATGTCGGCAATACAGGCCGCCTGGCCAT
CCGGTACAGAATGCATTGCCAAGTACAACTTTCACGGCACTGCTGAGCAGGACCTTCCTT
TCTGCAAAGGAGACGTGCTCACCATTGTGGCCGTCACCAAGGACCCCAACTGGTACAAAG
CCAAGAACAAGGTGGGCCGTGAGGGCATCATCCCAGCCAACTACGTCCAAAAGCGGGAGG
GCGTGAAGGCAGGCACCAAACTCAGCCTCATGCCCTGGTTCCATGGCAAGATCACAAGGG
AGCAGGCAGAGCGGCTCCTGTGCCCACCAGAGACAGGCCTGTTCCTGGTGCGGGAGAGCA
CCAACTACCCCGGGGACTACACGCTGTGCGTGAGCTGCGACGGCAAGGTGGAGCACTACC
GCATCATGTACCACGCCAGCAAGCTCAGCATCGACGAGGAGGTGTACTTTGAGAACCTCA
TGCAGCTGGTGGAGCACTACACCTCAGATGCAGATGGACTCTGTACCCGCCTCATCAAGC
CAAAACTCATGGAGGGCACCGTGGCGGCCCAGGATGAGTTCTTTCGCAGTGGCTGGGCAC
TGAACATGAAGGACCTGAAGCTGCTGCAGACCATTGGGAAGGGGGAATTTGGAGACGTGA
TGCTTGGCGACTACCGAGGGAACAAAGTCGCCGTCAAGTGCATTAAGAATGACGCCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCCTCCCCGACCCGGGCCGCGCAGCCATCCCCCTGCCTCTGTCTGGCCGTCCTTCCT
CCCCCTCCTTTCGCACCCAGACCTCTTTGTACCGCACCCCCCGGGGACCCCTGCGCCCCT
CCCTTCCCGGCTGGCCGCATGGACCGTCCCGCAGGCCGCTGATGCTGCCCGCAGCGAGGT
GGCCCGGACCGCAGTGCCCCGAAAAAGCTCTCATGGTACCAAGTGATAGGTCGGCCTTCC
TGTGACACGGGGACGCCAGATCTTCTGAGAAGATGTCGGCAATACAGGCCGCCTGGCCAT
CCGGTACAGAATGCATTGCCAAGTACAACTTTCACGGCACTGCTGAGCAGGACCTTCCTT
TCTGCAAAGGAGACGTGCTCACCATTGTGGCCGTCACCAAGGACCCCAACTGGTACAAAG
CCAAGAACAAGGTGGGCCGTGAGGGCATCATCCCAGCCAACTACGTCCAAAAGCGGGAGG
GCGTGAAGGCAGGCACCAAACTCAGCCTCATGCCCTGGTTCCATGGCAAGATCACAAGGG
AGCAGGCAGAGCGGCTCCTGTGCCCACCAGAGACAGGCCTGTTCCTGGTGCGGGAGAGCA
CCAACTACCCCGGGGACTACACGCTGTGCGTGAGCTGCGACGGCAAGGTGGAGCACTACC
GCATCATGTACCACGCCAGCAAGCTCAGCATCGACGAGGAGGTGTACTTTGAGAACCTCA
TGCAGCTGGTGGAGCACTACACCTCAGATGCAGATGGACTCTGTACCCGCCTCATCAAGC
CAAAACTCATGGAGGGCACCGTGGCGGCCCAGGATGAGTTCTTTCGCAGTGGCTGGGCAC
TGAACATGAAGGACCTGAAGCTGCTGCAGACCATTGGGAAGGGGGAATTTGGAGACGTGA
TGCTTGGCGACTACCGAGGGAACAAAGTCGCCGTCAAGTGCATTAAGAATGACGCCACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865616|ref|XP_580509.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865616|ref|XP_580509.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               274-373, - strand, RNAz p=0.557918
               

               
               617-734, + strand, RNAz p=0.688479

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-373, - strand, RNAz p=0.557918
               

               
               617-734, + strand, RNAz p=0.688479

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               274-402, gnl|bosTau2|chr21 (22986359-22986487)
               

               
               274-402, gnl|canFam2|chr30 (40863272-40863416)
               

               
               274-402, gnl|danRer3|chr25 (13599000-13598876)
               

               
               274-402, gnl|echTel1|scaffold_301895 (1012-1149)
               

               
               274-402, gnl|fr1|chrUn (37959990-37959855)
               

               
               274-402, gnl|galGal2|chr10 (6394-6249)
               

               
               274-402, gnl|hg17|chr15 (72877984-72878128)
               

               
               274-402, gnl|Hg17|chr15 (72877995-72878123)
               

               
               274-402, gnl|loxAfr1|scaffold_63034 (3384-3528)
               

               
               274-402, gnl|mm7|chr9 (57658701-57658557)
               

               
               274-402, gnl|Mm7|chr9 (57658688-57658560)
               

               
               274-402, gnl|monDom2|scaffold_41 (2732573-2732427)
               

               
               274-402, gnl|panTro1|chr16_random (22005706-22005850)
               

               
               274-402, gnl|rheMac2|chr7 (53607093-53607237)
               

               
               274-402, gnl|rn3|chr8 (61404704-61404562)
               

               
               274-402, gnl|tetNig1|chrUn_random (137101698-137101554)
               

               
               274-402, gnl|xenTro1|scaffold_287 (1297491-1297357)
               


               
               496-734, gnl|bosTau2|chr21 (22986997-22987237)
               

               
               496-734, gnl|Hg17|chr15 (72878645-72878885)
               

               
               496-734, gnl|Mm7|chr9 (57658072-57657834)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               274-402, gnl|bosTau2|chr21 (22986359-22986487)
               

               
               274-402, gnl|canFam2|chr30 (40863272-40863416)
               

               
               274-402, gnl|danRer3|chr25 (13599000-13598876)
               

               
               274-402, gnl|echTel1|scaffold_301895 (1012-1149)
               

               
               274-402, gnl|fr1|chrUn (37959990-37959855)
               

               
               274-402, gnl|galGal2|chr10 (6394-6249)
               

               
               274-402, gnl|hg17|chr15 (72877984-72878128)
               

               
               274-402, gnl|Hg17|chr15 (72877995-72878123)
               

               
               274-402, gnl|loxAfr1|scaffold_63034 (3384-3528)
               

               
               274-402, gnl|mm7|chr9 (57658701-57658557)
               

               
               274-402, gnl|Mm7|chr9 (57658688-57658560)
               

               
               274-402, gnl|monDom2|scaffold_41 (2732573-2732427)
               

               
               274-402, gnl|panTro1|chr16_random (22005706-22005850)
               

               
               274-402, gnl|rheMac2|chr7 (53607093-53607237)
               

               
               274-402, gnl|rn3|chr8 (61404704-61404562)
               

               
               274-402, gnl|tetNig1|chrUn_random (137101698-137101554)
               

               
               274-402, gnl|xenTro1|scaffold_287 (1297491-1297357)
               


               
               496-734, gnl|bosTau2|chr21 (22986997-22987237)
               

               
               496-734, gnl|Hg17|chr15 (72878645-72878885)
               

               
               496-734, gnl|Mm7|chr9 (57658072-57657834)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               ill (0.175593)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ill (0.175593)

	274-373, - strand, RNAz p=0.557918
	617-734, + strand, RNAz p=0.688479

	274-402, gnl\|bosTau2\|chr21 (22986359-22986487)
	274-402, gnl\|canFam2\|chr30 (40863272-40863416)
	274-402, gnl\|danRer3\|chr25 (13599000-13598876)
	274-402, gnl\|echTel1\|scaffold_301895 (1012-1149)
	274-402, gnl\|fr1\|chrUn (37959990-37959855)
	274-402, gnl\|galGal2\|chr10 (6394-6249)
	274-402, gnl\|hg17\|chr15 (72877984-72878128)
	274-402, gnl\|Hg17\|chr15 (72877995-72878123)
	274-402, gnl\|loxAfr1\|scaffold_63034 (3384-3528)
	274-402, gnl\|mm7\|chr9 (57658701-57658557)
	274-402, gnl\|Mm7\|chr9 (57658688-57658560)
	274-402, gnl\|monDom2\|scaffold_41 (2732573-2732427)
	274-402, gnl\|panTro1\|chr16_random (22005706-22005850)
	274-402, gnl\|rheMac2\|chr7 (53607093-53607237)
	274-402, gnl\|rn3\|chr8 (61404704-61404562)
	274-402, gnl\|tetNig1\|chrUn_random (137101698-137101554)
	274-402, gnl\|xenTro1\|scaffold_287 (1297491-1297357)

	496-734, gnl\|bosTau2\|chr21 (22986997-22987237)
	496-734, gnl\|Hg17\|chr15 (72878645-72878885)
	496-734, gnl\|Mm7\|chr9 (57658072-57657834)