Non-Coding RNA Search

Ss1.1-Thy1-THY010085H10.5

Sequence:


               
               CCTCGACATTACAAAAAATCAACACAAGATCAAAAAGGAAAAGGACGAGAGAAAATTACT
TTAAAGATAATTCAACATAAAAACCCTGGTGCTTCTTACATTATAAAGTACGTTTTAAAA
AACCCACAAACTATTATACATAAGTTTATGAATCAATTAAATATCCTGCACTTGTTAGGA
ACACGCATATCCCTTCTTTGTTGAGTTTAACGGAACGGGACAGCGGCATGCGCCCGGCGG
CGGGCTGCTCTGGCCGCGGGTCTCCCCGGGCGCCCCCTCCCCGGGGCCCAGCGCTCCCTC
CTCGCCCCATCCGCGTCCGGGCACGGGGGCGCGGCGGCGGGTCCCCAGCCCCTCCCCCGC
AGAGGTCAATGCCAACGAACAAACGTCCCCCTCCCTCCCTCTCCGCCCCGAGCGTCCTTC
TTTGAGCCAGACGCCAACTTGACCCTCACCAGCATTATCAGGAGCGCGCTCAGCAAGTTG
GTAGTTTCCTACCCCCTTTTCCCAACGCCCGCGACTCAACATCACTCCTCCCACCCCCAC
CCCCGTTACCCTCCGGGGAGCACGGGGAAGGCTCGACGCTCCAGGACAGGACCAGCCAAG
CTGACAGATCGATTAGCCCAGGCCCGCGCACGCACGCACGCACGCACACGGCCCCGCACA
CAGCCCCATCCTACCCTGCAACCAACCCCGTCGACTGCCTTACACACCCGCCCCCGCGCT
GGCCGGCCGACCTAGTGCCTTGTTCTCACCCCCGTGCTGGCGGAGCGGACGCCGCGCTCT
GGGTCCCAGAGGGGCCGGGTGGCTCAGACGACCCACCATTTCCCCACCCCGACCGTGCTG
AACGGACCCCCCTACACGAGAGAAAATAAAGGAGCAATAAAGTCACGAGAACTATTGTCC
CCCAATCGAGAGCCCGAGGGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGACATTACAAAAAATCAACACAAGATCAAAAAGGAAAAGGACGAGAGAAAATTACT
TTAAAGATAATTCAACATAAAAACCCTGGTGCTTCTTACATTATAAAGTACGTTTTAAAA
AACCCACAAACTATTATACATAAGTTTATGAATCAATTAAATATCCTGCACTTGTTAGGA
ACACGCATATCCCTTCTTTGTTGAGTTTAACGGAACGGGACAGCGGCATGCGCCCGGCGG
CGGGCTGCTCTGGCCGCGGGTCTCCCCGGGCGCCCCCTCCCCGGGGCCCAGCGCTCCCTC
CTCGCCCCATCCGCGTCCGGGCACGGGGGCGCGGCGGCGGGTCCCCAGCCCCTCCCCCGC
AGAGGTCAATGCCAACGAACAAACGTCCCCCTCCCTCCCTCTCCGCCCCGAGCGTCCTTC
TTTGAGCCAGACGCCAACTTGACCCTCACCAGCATTATCAGGAGCGCGCTCAGCAAGTTG
GTAGTTTCCTACCCCCTTTTCCCAACGCCCGCGACTCAACATCACTCCTCCCACCCCCAC
CCCCGTTACCCTCCGGGGAGCACGGGGAAGGCTCGACGCTCCAGGACAGGACCAGCCAAG
CTGACAGATCGATTAGCCCAGGCCCGCGCACGCACGCACGCACGCACACGGCCCCGCACA
CAGCCCCATCCTACCCTGCAACCAACCCCGTCGACTGCCTTACACACCCGCCCCCGCGCT
GGCCGGCCGACCTAGTGCCTTGTTCTCACCCCCGTGCTGGCGGAGCGGACGCCGCGCTCT
GGGTCCCAGAGGGGCCGGGTGGCTCAGACGACCCACCATTTCCCCACCCCGACCGTGCTG
AACGGACCCCCCTACACGAGAGAAAATAAAGGAGCAATAAAGTCACGAGAACTATTGTCC
CCCAATCGAGAGCCCGAGGGGCAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               115-313, - strand, RNAz p=0.789027
               

               
               465-565, - strand, RNAz p=0.998389

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-313, - strand, RNAz p=0.789027
               

               
               465-565, - strand, RNAz p=0.998389

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               91-184, - strand, RNAmicro p=0.990499
               

               
               545-614, - strand, RNAmicro p=0.95514

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               91-184, - strand, RNAmicro p=0.990499
               

               
               545-614, - strand, RNAmicro p=0.95514

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-924, gnl|bosTau2|chr7 (9298679-9299630)
               

               
               1-924, gnl|Hg17|chr19 (13069131-13070059)
               

               
               1-924, gnl|Mm7|chr8 (83290964-83290085)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr7 (9298679-9299630)
               

               
               1-924, gnl|Hg17|chr19 (13069131-13070059)
               

               
               1-924, gnl|Mm7|chr8 (83290964-83290085)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               mas (0.42061)
               

               
               mcp (0.341297)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               mcp (0.341297)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	115-313, - strand, RNAz p=0.789027
	465-565, - strand, RNAz p=0.998389

	91-184, - strand, RNAmicro p=0.990499
	545-614, - strand, RNAmicro p=0.95514

	1-924, gnl\|bosTau2\|chr7 (9298679-9299630)
	1-924, gnl\|Hg17\|chr19 (13069131-13070059)
	1-924, gnl\|Mm7\|chr8 (83290964-83290085)

	mas (0.42061)
	mcp (0.341297)
	pla (0.133672)
	eep (0.122564)
	ebs (0.118301)
	jca (0.11396)