Non-Coding RNA Search

Ss1.1-Thy1-THY010086B07.5

Sequence:


               
               AGACACGTGAAGGTCGGTGAGTTGGTGCGGAGTTCGTCTCGGCACGCGTGGCCGCGCTGG
GATGGATTCCTCCTCGTCTTCCTCCGCGGCGGGTTTGGGCTCAGTGGACCCGCAGCTGCA
GCATTTCATCGAGGTGGAGACTCAGAAACAGCGCTTCCAGCAGCTGGTGCACCAGATGAC
GGAACTTTGTTGGGAAAAGTGCATGGACAAGCCTGGGCCAAAGTTGGACAATCGGGCTGA
GGCCTGTTTTGTGAACTGCGTTGAGCGCTTCATTGATACAAGCCAGTTCATCTTGAATCG
ACTGGAACAGACCCAGAAATCCAAGCCAGTCTTCTCAGAAAGCCTTTCTGACTGATCTCA
GCATTACCTCTTTGGAAAAAGGAAGGTAGTTCAAGAAATGAAGAGCGGTTGATGGGATGG
TTGAAGAAAAGGCTATGGGGGGATTGGCTCCCACCTTGTCACTCTTGGGACATCCTGTCT
TCTGAGAAAGAACAAAGACCAATTTTTGTGTGTGTGGGGTTTGAGGGTCAAATGTGTTTG
GGATTGTGTTTTTTAATGCTAATCTTGTGAAAACAATTGACAGATGAATGGAAAACTCTA
CTAGATGCATATTACTGTGTGAGGGACGATGCTTTTCTCATAGCCCCATTAATTCACTGC
TTCCTATAATTTTGATAGTGGAACCACATAGGTAAAGATCTGTTATTTGTGTGGATTCAT
TGAAGATTTCTGGGGAGATTGATACATATTTTTGTATCTCTCAGAAAGGACAGCAGTGGG
GAAAGAGTAATTTGGTACTTAACTGTAGGCCTCCTTATCTAGTGTTGGACTATCAGTGCT
GGGGAAAAAAATGTATGGAATACAGTACATTTCAGCTTTTTAGATTATCTCCCTCTCTTA
TATTGTGATTCACTTAAGTATCTCTATAAAGTACAGTCTCAAGCTAGTACAGGTAGCCTG
AGAGTCTAGAGGCCTTTAAGGTTAAAGGAATGTAGCCAGTAAACATACTTGTCATACTAA
ACTGCCGCAAGGAAGAAGTTAACTTACCCTGTATATCAGGGTTCAAAAAAATTCAAAGAT
GTGCCTAAATGAAAAAAAAATACGTTATAAAAATTTAGGCCAGTCAAAAACTAATACAAT
TTCAGGTAGAGGTGCATGCGTAATGTAAATCAGTATAGTTTCCATTTACTGCGTTCTTTT
AATCACCGAAATAAAAGCTTCTACAAGATTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACACGTGAAGGTCGGTGAGTTGGTGCGGAGTTCGTCTCGGCACGCGTGGCCGCGCTGG
GATGGATTCCTCCTCGTCTTCCTCCGCGGCGGGTTTGGGCTCAGTGGACCCGCAGCTGCA
GCATTTCATCGAGGTGGAGACTCAGAAACAGCGCTTCCAGCAGCTGGTGCACCAGATGAC
GGAACTTTGTTGGGAAAAGTGCATGGACAAGCCTGGGCCAAAGTTGGACAATCGGGCTGA
GGCCTGTTTTGTGAACTGCGTTGAGCGCTTCATTGATACAAGCCAGTTCATCTTGAATCG
ACTGGAACAGACCCAGAAATCCAAGCCAGTCTTCTCAGAAAGCCTTTCTGACTGATCTCA
GCATTACCTCTTTGGAAAAAGGAAGGTAGTTCAAGAAATGAAGAGCGGTTGATGGGATGG
TTGAAGAAAAGGCTATGGGGGGATTGGCTCCCACCTTGTCACTCTTGGGACATCCTGTCT
TCTGAGAAAGAACAAAGACCAATTTTTGTGTGTGTGGGGTTTGAGGGTCAAATGTGTTTG
GGATTGTGTTTTTTAATGCTAATCTTGTGAAAACAATTGACAGATGAATGGAAAACTCTA
CTAGATGCATATTACTGTGTGAGGGACGATGCTTTTCTCATAGCCCCATTAATTCACTGC
TTCCTATAATTTTGATAGTGGAACCACATAGGTAAAGATCTGTTATTTGTGTGGATTCAT
TGAAGATTTCTGGGGAGATTGATACATATTTTTGTATCTCTCAGAAAGGACAGCAGTGGG
GAAAGAGTAATTTGGTACTTAACTGTAGGCCTCCTTATCTAGTGTTGGACTATCAGTGCT
GGGGAAAAAAATGTATGGAATACAGTACATTTCAGCTTTTTAGATTATCTCCCTCTCTTA
TATTGTGATTCACTTAAGTATCTCTATAAAGTACAGTCTCAAGCTAGTACAGGTAGCCTG
AGAGTCTAGAGGCCTTTAAGGTTAAAGGAATGTAGCCAGTAAACATACTTGTCATACTAA
ACTGCCGCAAGGAAGAAGTTAACTTACCCTGTATATCAGGGTTCAAAAAAATTCAAAGAT
GTGCCTAAATGAAAAAAAAATACGTTATAAAAATTTAGGCCAGTCAAAAACTAATACAAT
TTCAGGTAGAGGTGCATGCGTAATGTAAATCAGTATAGTTTCCATTTACTGCGTTCTTTT
AATCACCGAAATAAAAGCTTCTACAAGATTGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               TIM8A_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TIM8A_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               316-435, - strand, RNAz p=0.772282
               

               
               666-758, - strand, RNAz p=0.826491
               

               
               1030-1148, + strand, RNAz p=0.83288

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-435, - strand, RNAz p=0.772282
               

               
               666-758, - strand, RNAz p=0.826491
               

               
               1030-1148, + strand, RNAz p=0.83288

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1236, gnl|bosTau2|chr8 (19257062-19258288)
               

               
               1-1236, gnl|Hg17|chr2 (162759721-162758529)
               

               
               1-1236, gnl|Mm7|chr10 (11307416-11308624)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr8 (19257062-19258288)
               

               
               1-1236, gnl|Hg17|chr2 (162759721-162758529)
               

               
               1-1236, gnl|Mm7|chr10 (11307416-11308624)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               pgl (0.35545)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.35545)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	316-435, - strand, RNAz p=0.772282
	666-758, - strand, RNAz p=0.826491
	1030-1148, + strand, RNAz p=0.83288

	1-1236, gnl\|bosTau2\|chr8 (19257062-19258288)
	1-1236, gnl\|Hg17\|chr2 (162759721-162758529)
	1-1236, gnl\|Mm7\|chr10 (11307416-11308624)

	pgl (0.35545)
	ldo (0.291008)
	ste (0.270416)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	lun (0.150489)
	isp (0.150376)
	ssp (0.13552)
	lyg (0.133103)
	nmm (0.132802)
	cov (0.132153)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)