Non-Coding RNA Search

Ss1.1-Thy1-THY010087A06.5

Sequence:


               
               TGAAACCTTGAATATGCAAAGCCCAGCGGGAGCGAACCGAAGGGAATGACCGAGGATGTC
TGGCAGTGGGCCCCGTGGCTCTCAAAGCATCCTGAAACTTGAACTGACACTTTCAGCAGA
AATCTCTTGGAACTTAACCGGTCTGATGCGACCGCGCGTATCTGTACCTTCCACTGAGTT
CTCGGAGAAAATGCTAATGTGAAGTGCCCGCCTCTGCTGCCTCTGGCAAGACTCGATGTT
TACAAACCAACTCTGAAATACTGGTTCTCAATTTGCCTTGGAGCATGATTGTGAAGGAAC
CACTGAGAATTTTCAAGATCAAACCTGAGACTGCAGCTCTTGCCCCTGGTTTGCCTTTTT
TTCTTCTTTGGATGCCACCAAAGCCTCGCATCTGCTCTCGTTTTACTTCGTGCACTGGAA
CCCGAGCGTTTCTCACAGAGCACCGCCGAGCTTTGCCTCCAGTGCTGTCCGGCAATGCAA
TTTTCTTAACTCTTAGTTTTTAATTTGGGGCGGGAGGGGCAGAACTCCAGTGTCCTAGCT
GTATTATGATCCCGCAGTGAAGACATTGCATGTTGTTTTCACTACTGTACACTTGACCTG
CACATACAAGAAAAAGGTGGAATGTTTAAAACACCACAATCAGCTCAGGGTATTTGCCAA
TTTGAAATAAAGTGGGAAGGGAAGGTGCGTCCTGAGAGCAAGGGTACTAACGTCCCTCTC
GCTGCCAGGAGCGAGAGGCGTGTTGTGTGTGTGCCGATGTGTGTGTGGGGCACGCGCGTG
CATGTGTGACTGTGCATGTGTCCTATTTATCCACATGGGGACGACTGGGACCGTCAGCTT
TTATTTATTATTTTCGAACGTGGCCTGATGAGCGGCCACTTGGGGAAGGGAAGGGAGGAA
GCTGTACCCGAGTGCTCCAGATGCCTTAACTATGCACACAGCTAAGTGACCAAACTTCTC
GTTTTGATTTGAAAAAAAGTGCATTGTTTTCTTGTCCCTCCCTTTGATGAAACGTTTCCC
TTTGATGGGCCTTTTGATGTGAACAGATGTTTTCTAGGACAAAAATCTAAGGACTAATTT
TAAACTTAACAACATTCCACTTTTGTAATTTGTTTTAAATTGTTTTATGTATAGTAAGCA
CAACTGTAATCTAGTTTTAAGAGAAACCGGTGCTTTTAGTTCAATTGTATTTCCCTTGTT
ACTGTAAAAGACTGTTTATTAATTATGTTTACAGTTTGTTGCAACAGCCATTTTCTTGGG
AGAAAGCTTGAGTGTAAAGCCATTTGTAAAAGGCTTTGCCATACTCATTTTAATATGTGC
CTGTTGCTGTTAACTTTTGATGAATAAAAACCTATCTTTTCACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAACCTTGAATATGCAAAGCCCAGCGGGAGCGAACCGAAGGGAATGACCGAGGATGTC
TGGCAGTGGGCCCCGTGGCTCTCAAAGCATCCTGAAACTTGAACTGACACTTTCAGCAGA
AATCTCTTGGAACTTAACCGGTCTGATGCGACCGCGCGTATCTGTACCTTCCACTGAGTT
CTCGGAGAAAATGCTAATGTGAAGTGCCCGCCTCTGCTGCCTCTGGCAAGACTCGATGTT
TACAAACCAACTCTGAAATACTGGTTCTCAATTTGCCTTGGAGCATGATTGTGAAGGAAC
CACTGAGAATTTTCAAGATCAAACCTGAGACTGCAGCTCTTGCCCCTGGTTTGCCTTTTT
TTCTTCTTTGGATGCCACCAAAGCCTCGCATCTGCTCTCGTTTTACTTCGTGCACTGGAA
CCCGAGCGTTTCTCACAGAGCACCGCCGAGCTTTGCCTCCAGTGCTGTCCGGCAATGCAA
TTTTCTTAACTCTTAGTTTTTAATTTGGGGCGGGAGGGGCAGAACTCCAGTGTCCTAGCT
GTATTATGATCCCGCAGTGAAGACATTGCATGTTGTTTTCACTACTGTACACTTGACCTG
CACATACAAGAAAAAGGTGGAATGTTTAAAACACCACAATCAGCTCAGGGTATTTGCCAA
TTTGAAATAAAGTGGGAAGGGAAGGTGCGTCCTGAGAGCAAGGGTACTAACGTCCCTCTC
GCTGCCAGGAGCGAGAGGCGTGTTGTGTGTGTGCCGATGTGTGTGTGGGGCACGCGCGTG
CATGTGTGACTGTGCATGTGTCCTATTTATCCACATGGGGACGACTGGGACCGTCAGCTT
TTATTTATTATTTTCGAACGTGGCCTGATGAGCGGCCACTTGGGGAAGGGAAGGGAGGAA
GCTGTACCCGAGTGCTCCAGATGCCTTAACTATGCACACAGCTAAGTGACCAAACTTCTC
GTTTTGATTTGAAAAAAAGTGCATTGTTTTCTTGTCCCTCCCTTTGATGAAACGTTTCCC
TTTGATGGGCCTTTTGATGTGAACAGATGTTTTCTAGGACAAAAATCTAAGGACTAATTT
TAAACTTAACAACATTCCACTTTTGTAATTTGTTTTAAATTGTTTTATGTATAGTAAGCA
CAACTGTAATCTAGTTTTAAGAGAAACCGGTGCTTTTAGTTCAATTGTATTTCCCTTGTT
ACTGTAAAAGACTGTTTATTAATTATGTTTACAGTTTGTTGCAACAGCCATTTTCTTGGG
AGAAAGCTTGAGTGTAAAGCCATTTGTAAAAGGCTTTGCCATACTCATTTTAATATGTGC
CTGTTGCTGTTAACTTTTGATGAATAAAAACCTATCTTTTCACAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               390-499, - strand, RNAz p=0.938553
               

               
               692-805, - strand, RNAz p=0.843123
               

               
               1211-1330, + strand, RNAz p=0.986294

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-499, - strand, RNAz p=0.938553
               

               
               692-805, - strand, RNAz p=0.843123
               

               
               1211-1330, + strand, RNAz p=0.986294

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1211-1330, AM025997 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0005916k06 
(emb|AM025997.1|), blast E-value=0, identity=98.33% 
               

               
               1211-1330, AM026654 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0005916k06 
(emb|AM026654.1|), blast E-value=0, identity=98.33% 
               

               
               1211-1330, 1316956 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528410.1|), 
blast E-value=0, identity=98.33% 
               

               
               1211-1330, 1318024 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529372.1|), 
blast E-value=0, identity=98.33% 
               

               
               1211-1330, GL-Cf-1510 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN744718.1|), blast E-value=0, identity=98.33% 
               

               
               1211-1330, 1606041 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY465526.1|), blast E-value=0, identity=98.33%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1211-1330, AM025997 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0005916k06 
(emb|AM025997.1|), blast E-value=0, identity=98.33% 
               

               
               1211-1330, AM026654 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0005916k06 
(emb|AM026654.1|), blast E-value=0, identity=98.33% 
               

               
               1211-1330, 1316956 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528410.1|), 
blast E-value=0, identity=98.33% 
               

               
               1211-1330, 1318024 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529372.1|), 
blast E-value=0, identity=98.33% 
               

               
               1211-1330, GL-Cf-1510 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN744718.1|), blast E-value=0, identity=98.33% 
               

               
               1211-1330, 1606041 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY465526.1|), blast E-value=0, identity=98.33%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of L12052, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of L12052, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1364, gnl|bosTau2|chr18 (56752-58169)
               

               
               2-1364, gnl|Hg17|chr8 (66793861-66792472)
               

               
               2-1364, gnl|Mm7|chr3 (18959451-18958059)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1364, gnl|bosTau2|chr18 (56752-58169)
               

               
               2-1364, gnl|Hg17|chr8 (66793861-66792472)
               

               
               2-1364, gnl|Mm7|chr3 (18959451-18958059)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbl (0.344392)
               

               
               lnt (0.284616)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               lnt (0.284616)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	390-499, - strand, RNAz p=0.938553
	692-805, - strand, RNAz p=0.843123
	1211-1330, + strand, RNAz p=0.986294

	1211-1330, AM025997 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0005916k06 (emb\|AM025997.1\|), blast E-value=0, identity=98.33%
	1211-1330, AM026654 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0005916k06 (emb\|AM026654.1\|), blast E-value=0, identity=98.33%
	1211-1330, 1316956 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN528410.1\|), blast E-value=0, identity=98.33%
	1211-1330, 1318024 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN529372.1\|), blast E-value=0, identity=98.33%
	1211-1330, GL-Cf-1510 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb\|DN744718.1\|), blast E-value=0, identity=98.33%
	1211-1330, 1606041 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY465526.1\|), blast E-value=0, identity=98.33%

	2-1364, gnl\|bosTau2\|chr18 (56752-58169)
	2-1364, gnl\|Hg17\|chr8 (66793861-66792472)
	2-1364, gnl\|Mm7\|chr3 (18959451-18958059)

	cbl (0.344392)
	lnt (0.284616)
	che (0.272628)
	fce (0.271592)
	ski (0.146735)
	cst (0.140036)
	ese (0.126502)
	tra (0.123092)
	jca (0.11396)
	ldo (0.0970026)