Ss1.1-Thy1-THY010087A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTCGACACCCTCTGGCAGCTCGTGGAACATTATTCTTATAAATCAGATGGTTTGTTAA GAGTTCTTACAGTTCCATGTCAAAAAATTGGTGGGCAAACGGGAAATGATAGTTTTCGTC CACAACTTCCAAGTGCTCATCCTGCGACTTGGTCAGCGGGTGGAATAATCTCAAGAATCA AATCATACTCCTTCCCAAAGCCTGGCCACAGAAAGGCCTCCTCGCCCCAAGGGAACCGGC CAGAGAGTTTGGTGTCGTACAACCCTTACGAGTCAGACCGAGGGCCCTGGGCCAACGAAA GAGAAGCCCAGAGAGAAGCCTTACCCATGGACACCGAGGTCTATGAAAGCCCCTATGCAG ACCCCGAGGAGATCAGACCCAAGGAGGTCTACCTGGACCGGAAGCTGCTGACCCTGGAGG ACAAGGAACTGGGCTCTGGGAACTTCGGGACTGTGAAGAAGGGGTACTACCAGATGAAAA AAGTTGTGAAAACAGTGGCTGTGAAAATCCTGAAAAATGAGGCCAATGATCCCGCTCTTA AAGATGAGTTATTAGCAGAAGCAAACGTCATGCAACAGCTGGACAACCCTTACATAGTTC GCATGATCGGAATATGTGAAGCCGAGTCCTGGATGCTGGTTATGGAGATGGCTGAACTTG GTCCACTCAACAAATATTTACAGCAGAACAGGCACGTCAAGGATAAGAACATCATAGAGC TGGTTCATCAGGTGTCTATGGGAATGAAATACTTGGAAGAGTGCAATTTTGTGCACAGAG ATCTGGCTGCAAGGAATGTATTGTTGGTTACTCAACATTATGCCAAGATCAGTGACTTTG GACTCTCCAAAGCACTCCGTGCCGATGAAAACTACTATAAGGCCCAGACCCACGGGAAGT GGCCCGTGAAATGGTACGCTCCGGAATGCATCAACTACTACAAGTTCTCCAGCAAGAGCG ACGTCTGGAGCTTCGGAGTGTTGATGTGGGAAGCGTTTTCCTATGGACAGAAGCCATATC GGGGGATGAAAGGAAGCGAAGTTTCTGCTATGCTGGAGAAAGGAGAGAGGATGGGGTGCC CCCCGGGGTGTCCAAGAGAGATGTATGAGCTGATGACGCTGTGCTGGACCTATGACGTGG AGAACAGGCCTGGATTTGTAGCGGTGGAGCTCAGGCTGCGCAATTACTACTACGATGTGG TTAATTAACGTCTCCCACGCCCGTCCGTGGCTGCCTTTGAGCAGATGAGCAGTCGCAGGA AGACCATTCCAGTGCCTTGATTTTGAGTCTCCATCTCCCTCTGCCCATCAGGAGAGCCAG CTCAGGTGGAGCATATCCGTGACTGTTGTTCCCCAAAGCCTGTCCCCGAACAAGCCTTCC ACAGAGCAGACCCCTCCCGGAGGAGGCCCAGATTGATGGATGGACACCAGGATTGCAGGA CCGGTGGATTCATGTTTCTTGTCTGGGTGGCAGGTTATTTGCAGGATCGGTTTCCAAATT CCTTTCTGTCTTTCCAGTTCTGGGGCTGTGGGCTGCACTGGAATCACCATAGGGGGTTAA GCGCCCGTTAGCTGCTCTTTCAGTGGCCAGAGGGTGCCACTGGCCGGTGATGCCTGCAAG GAGGGAAGGAAGGAAGAGACGGGCTTTGGCTGCCACTGGAACGTGGCTCTTACAGGTCCC AAGACTGAGTCCTGCCACTGGAAAACTTTCCCCCATAAAAGTGCTTTGAGGCTTAAAAAA AAAAAAAAAAAATCAAGCTGGACCAGTGCAGTTTCTAAGCCAGTAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTCGACACCCTCTGGCAGCTCGTGGAACATTATTCTTATAAATCAGATGGTTTGTTAA GAGTTCTTACAGTTCCATGTCAAAAAATTGGTGGGCAAACGGGAAATGATAGTTTTCGTC CACAACTTCCAAGTGCTCATCCTGCGACTTGGTCAGCGGGTGGAATAATCTCAAGAATCA AATCATACTCCTTCCCAAAGCCTGGCCACAGAAAGGCCTCCTCGCCCCAAGGGAACCGGC CAGAGAGTTTGGTGTCGTACAACCCTTACGAGTCAGACCGAGGGCCCTGGGCCAACGAAA GAGAAGCCCAGAGAGAAGCCTTACCCATGGACACCGAGGTCTATGAAAGCCCCTATGCAG ACCCCGAGGAGATCAGACCCAAGGAGGTCTACCTGGACCGGAAGCTGCTGACCCTGGAGG ACAAGGAACTGGGCTCTGGGAACTTCGGGACTGTGAAGAAGGGGTACTACCAGATGAAAA AAGTTGTGAAAACAGTGGCTGTGAAAATCCTGAAAAATGAGGCCAATGATCCCGCTCTTA AAGATGAGTTATTAGCAGAAGCAAACGTCATGCAACAGCTGGACAACCCTTACATAGTTC GCATGATCGGAATATGTGAAGCCGAGTCCTGGATGCTGGTTATGGAGATGGCTGAACTTG GTCCACTCAACAAATATTTACAGCAGAACAGGCACGTCAAGGATAAGAACATCATAGAGC TGGTTCATCAGGTGTCTATGGGAATGAAATACTTGGAAGAGTGCAATTTTGTGCACAGAG ATCTGGCTGCAAGGAATGTATTGTTGGTTACTCAACATTATGCCAAGATCAGTGACTTTG GACTCTCCAAAGCACTCCGTGCCGATGAAAACTACTATAAGGCCCAGACCCACGGGAAGT GGCCCGTGAAATGGTACGCTCCGGAATGCATCAACTACTACAAGTTCTCCAGCAAGAGCG ACGTCTGGAGCTTCGGAGTGTTGATGTGGGAAGCGTTTTCCTATGGACAGAAGCCATATC GGGGGATGAAAGGAAGCGAAGTTTCTGCTATGCTGGAGAAAGGAGAGAGGATGGGGTGCC CCCCGGGGTGTCCAAGAGAGATGTATGAGCTGATGACGCTGTGCTGGACCTATGACGTGG AGAACAGGCCTGGATTTGTAGCGGTGGAGCTCAGGCTGCGCAATTACTACTACGATGTGG TTAATTAACGTCTCCCACGCCCGTCCGTGGCTGCCTTTGAGCAGATGAGCAGTCGCAGGA AGACCATTCCAGTGCCTTGATTTTGAGTCTCCATCTCCCTCTGCCCATCAGGAGAGCCAG CTCAGGTGGAGCATATCCGTGACTGTTGTTCCCCAAAGCCTGTCCCCGAACAAGCCTTCC ACAGAGCAGACCCCTCCCGGAGGAGGCCCAGATTGATGGATGGACACCAGGATTGCAGGA CCGGTGGATTCATGTTTCTTGTCTGGGTGGCAGGTTATTTGCAGGATCGGTTTCCAAATT CCTTTCTGTCTTTCCAGTTCTGGGGCTGTGGGCTGCACTGGAATCACCATAGGGGGTTAA GCGCCCGTTAGCTGCTCTTTCAGTGGCCAGAGGGTGCCACTGGCCGGTGATGCCTGCAAG GAGGGAAGGAAGGAAGAGACGGGCTTTGGCTGCCACTGGAACGTGGCTCTTACAGGTCCC AAGACTGAGTCCTGCCACTGGAAAACTTTCCCCCATAAAAGTGCTTTGAGGCTTAAAAAA AAAAAAAAAAAATCAAGCTGGACCAGTGCAGTTTCTAAGCCAGTAGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1294-1407, - strand, RNAz p=0.74934 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1294-1407, - strand, RNAz p=0.74934 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 482-692, gnl|bosTau2|chr8 (47366166-47365956) | |
| 482-692, gnl|canFam2|chr1 (98993384-98993156) | |
| 482-692, gnl|danRer3|chrNA (32228023-32227798) | |
| 482-692, gnl|dasNov1|scaffold_1406 (43441-43211) | |
| 482-692, gnl|echTel1|scaffold_2623 (588-817) | |
| 482-692, gnl|fr1|chrUn (266504301-266504517) | |
| 482-692, gnl|galGal2|chrZ (19652001-19651776) | |
| 482-692, gnl|hg17|chr9 (90719394-90719622) | |
| 482-692, gnl|Hg17|chr9 (90719408-90719618) | |
| 482-692, gnl|loxAfr1|scaffold_36517 (33270-33498) | |
| 482-692, gnl|mm7|chr13 (51676396-51676624) | |
| 482-692, gnl|Mm7|chr13 (51676410-51676620) | |
| 482-692, gnl|monDom2|scaffold_27 (1118944-1118716) | |
| 482-692, gnl|panTro1|chr11 (74878160-74878389) | |
| 482-692, gnl|rheMac2|chr15 (102692757-102692985) | |
| 482-692, gnl|rn3|chr17 (18452814-18452586) | |
| 482-692, gnl|tetNig1|chrUn_random (132000280-132000496) | |
| 482-692, gnl|xenTro1|scaffold_53 (1471229-1471002) | |
| 717-877, gnl|bosTau2|chr11 (3189811-3189651) | |
| 717-877, gnl|canFam2|chr10 (48017564-48017371) | |
| 717-877, gnl|danRer3|chr8 (11893864-11893674) | |
| 717-877, gnl|dasNov1|scaffold_58110 (394-538) | |
| 717-877, gnl|echTel1|scaffold_132325 (875-697) | |
| 717-877, gnl|fr1|chrUn (126789171-126789347) | |
| 717-877, gnl|galGal2|chr28 (1640528-1640350) | |
| 717-877, gnl|hg17|chr2 (97812474-97812667) | |
| 717-877, gnl|Hg17|chr2 (97812482-97812642) | |
| 717-877, gnl|loxAfr1|scaffold_36517 (35019-35197) | |
| 717-877, gnl|mm7|chr1 (37022238-37022430) | |
| 717-877, gnl|Mm7|chr1 (37022246-37022406) | |
| 717-877, gnl|monDom2|scaffold_136 (40573-40386) | |
| 717-877, gnl|oryCun1|scaffold_104314 (350-158) | |
| 717-877, gnl|panTro1|chr12 (100511673-100511866) | |
| 717-877, gnl|rheMac2|chr13 (97552285-97552478) | |
| 717-877, gnl|rn3|chr9 (35714493-35714685) | |
| 717-877, gnl|tetNig1|chr1 (15286647-15286455) | |
| 717-877, gnl|xenTro1|scaffold_87 (1501887-1501710) | |
| 880-1018, gnl|bosTau2|chr11 (3189559-3189421) | |
| 880-1018, gnl|Hg17|chr2 (97812736-97812874) | |
| 880-1018, gnl|Mm7|chr1 (37022498-37022636) | |
| 1022-1135, gnl|bosTau2|chr8 (47353865-47353752) | |
| 1022-1135, gnl|canFam2|chr1 (98980540-98980414) | |
| 1022-1135, gnl|danRer3|chrNA (32224185-32224057) | |
| 1022-1135, gnl|dasNov1|scaffold_1406 (36998-36870) | |
| 1022-1135, gnl|echTel1|scaffold_286178 (9159-9030) | |
| 1022-1135, gnl|fr1|chrUn (266506128-266506249) | |
| 1022-1135, gnl|galGal2|chrZ (19649483-19649355) | |
| 1022-1135, gnl|hg17|chr9 (90730343-90730471) | |
| 1022-1135, gnl|Hg17|chr9 (90730351-90730464) | |
| 1022-1135, gnl|loxAfr1|scaffold_73201 (9041-8912) | |
| 1022-1135, gnl|mm7|chr13 (51681403-51681531) | |
| 1022-1135, gnl|Mm7|chr13 (51681411-51681524) | |
| 1022-1135, gnl|monDom2|scaffold_27 (1103891-1103763) | |
| 1022-1135, gnl|oryCun1|scaffold_24432 (468-340) | |
| 1022-1135, gnl|panTro1|chr11 (74888935-74889063) | |
| 1022-1135, gnl|rheMac2|chr15 (102704688-102704816) | |
| 1022-1135, gnl|rn3|chr17 (18448215-18448087) | |
| 1022-1135, gnl|tetNig1|chrUn_random (132001095-132001217) | |
| 1022-1135, gnl|xenTro1|scaffold_53 (1468464-1468333) | |
| 1136-1787, gnl|bosTau2|chr8 (47350417-47349759) | |
| 1136-1787, gnl|Hg17|chr9 (90737365-90738018) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 482-692, gnl|bosTau2|chr8 (47366166-47365956) | |
| 482-692, gnl|canFam2|chr1 (98993384-98993156) | |
| 482-692, gnl|danRer3|chrNA (32228023-32227798) | |
| 482-692, gnl|dasNov1|scaffold_1406 (43441-43211) | |
| 482-692, gnl|echTel1|scaffold_2623 (588-817) | |
| 482-692, gnl|fr1|chrUn (266504301-266504517) | |
| 482-692, gnl|galGal2|chrZ (19652001-19651776) | |
| 482-692, gnl|hg17|chr9 (90719394-90719622) | |
| 482-692, gnl|Hg17|chr9 (90719408-90719618) | |
| 482-692, gnl|loxAfr1|scaffold_36517 (33270-33498) | |
| 482-692, gnl|mm7|chr13 (51676396-51676624) | |
| 482-692, gnl|Mm7|chr13 (51676410-51676620) | |
| 482-692, gnl|monDom2|scaffold_27 (1118944-1118716) | |
| 482-692, gnl|panTro1|chr11 (74878160-74878389) | |
| 482-692, gnl|rheMac2|chr15 (102692757-102692985) | |
| 482-692, gnl|rn3|chr17 (18452814-18452586) | |
| 482-692, gnl|tetNig1|chrUn_random (132000280-132000496) | |
| 482-692, gnl|xenTro1|scaffold_53 (1471229-1471002) | |
| 717-877, gnl|bosTau2|chr11 (3189811-3189651) | |
| 717-877, gnl|canFam2|chr10 (48017564-48017371) | |
| 717-877, gnl|danRer3|chr8 (11893864-11893674) | |
| 717-877, gnl|dasNov1|scaffold_58110 (394-538) | |
| 717-877, gnl|echTel1|scaffold_132325 (875-697) | |
| 717-877, gnl|fr1|chrUn (126789171-126789347) | |
| 717-877, gnl|galGal2|chr28 (1640528-1640350) | |
| 717-877, gnl|hg17|chr2 (97812474-97812667) | |
| 717-877, gnl|Hg17|chr2 (97812482-97812642) | |
| 717-877, gnl|loxAfr1|scaffold_36517 (35019-35197) | |
| 717-877, gnl|mm7|chr1 (37022238-37022430) | |
| 717-877, gnl|Mm7|chr1 (37022246-37022406) | |
| 717-877, gnl|monDom2|scaffold_136 (40573-40386) | |
| 717-877, gnl|oryCun1|scaffold_104314 (350-158) | |
| 717-877, gnl|panTro1|chr12 (100511673-100511866) | |
| 717-877, gnl|rheMac2|chr13 (97552285-97552478) | |
| 717-877, gnl|rn3|chr9 (35714493-35714685) | |
| 717-877, gnl|tetNig1|chr1 (15286647-15286455) | |
| 717-877, gnl|xenTro1|scaffold_87 (1501887-1501710) | |
| 880-1018, gnl|bosTau2|chr11 (3189559-3189421) | |
| 880-1018, gnl|Hg17|chr2 (97812736-97812874) | |
| 880-1018, gnl|Mm7|chr1 (37022498-37022636) | |
| 1022-1135, gnl|bosTau2|chr8 (47353865-47353752) | |
| 1022-1135, gnl|canFam2|chr1 (98980540-98980414) | |
| 1022-1135, gnl|danRer3|chrNA (32224185-32224057) | |
| 1022-1135, gnl|dasNov1|scaffold_1406 (36998-36870) | |
| 1022-1135, gnl|echTel1|scaffold_286178 (9159-9030) | |
| 1022-1135, gnl|fr1|chrUn (266506128-266506249) | |
| 1022-1135, gnl|galGal2|chrZ (19649483-19649355) | |
| 1022-1135, gnl|hg17|chr9 (90730343-90730471) | |
| 1022-1135, gnl|Hg17|chr9 (90730351-90730464) | |
| 1022-1135, gnl|loxAfr1|scaffold_73201 (9041-8912) | |
| 1022-1135, gnl|mm7|chr13 (51681403-51681531) | |
| 1022-1135, gnl|Mm7|chr13 (51681411-51681524) | |
| 1022-1135, gnl|monDom2|scaffold_27 (1103891-1103763) | |
| 1022-1135, gnl|oryCun1|scaffold_24432 (468-340) | |
| 1022-1135, gnl|panTro1|chr11 (74888935-74889063) | |
| 1022-1135, gnl|rheMac2|chr15 (102704688-102704816) | |
| 1022-1135, gnl|rn3|chr17 (18448215-18448087) | |
| 1022-1135, gnl|tetNig1|chrUn_random (132001095-132001217) | |
| 1022-1135, gnl|xenTro1|scaffold_53 (1468464-1468333) | |
| 1136-1787, gnl|bosTau2|chr8 (47350417-47349759) | |
| 1136-1787, gnl|Hg17|chr9 (90737365-90738018) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.151814) | |
| cly (0.120642) | |
| nbm (0.0993246) |