Non-Coding RNA Search

Ss1.1-Thy1-THY010087D05.5

Sequence:


               
               GTTTAGATGGTCTATTGATCAACTAGCTGTCATAAATCCTGTAGAAATAGACCCAGAAGA
CATTCATCGTCAAGCTTTATACTTAAGTCGTTCTCGAATAGATAAAGATGTGGAAGACAA
AAGACAAAAAGCCATTGAAGAGTTTTTCACTAAGGATGTCATTGTACCCTCTCCTTGGAC
TGATCATGAAGGGAAGCAGCTTTCAGAGTCTCATTCCAGTAAATGTGTTAACATAAATAA
TGAATCTCCAATGGGAAGAAAGCTGACTATCCATTCTGAGAAAAGCAATGTTGCTTGCCA
GACATTGCTGTCTCTTCCTGTGGATTTTAATTTAGAAAAGATACTAGGTGACTATTTTAG
AGCTGATGAATTTGCAGATCAATCTCCTGGAAACCTCAGTTCTTCATCCCTCAGAAGAAA
GCTATTTTTAGATGGCAACGGAAGTATCTCTGACTCCTTATCTCCAGCTTCTCCCAGAAG
TCCTCGTAGCGGTGCTCAAGCATCACTTGAGGTTTTCTGTTCAATAGATTTATCTCCTGT
GCAGACCCCAAGTTCGGGGCAGTTTTCTTCTAGCCCTATCCAGGGTAGTGCAAAAAAATA
CAGTTTGGGAAGCATAACCAGTCCAACACCTATTTCTTCACCCACTTTCTCACCGATTGA
CTTTCAGATAGGAAAGACACCACTCTCAGAACAAAGGAAGTTTACTTTGCATTCTCCTGA
TGCTTCATCTGGGGCCACTTCTAATGGAATTACCAATCCGTGTATCAGAAGTCCTTATAT
AGATGGCTGCTCACCCATAAAAAATTGGTCTCCCATGAGACTCGAGGTGTGTAGAGGGGG
TGCTCAGTATCGGACCTCAGTGATCCGAATACCTTTTACCCTTGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTAGATGGTCTATTGATCAACTAGCTGTCATAAATCCTGTAGAAATAGACCCAGAAGA
CATTCATCGTCAAGCTTTATACTTAAGTCGTTCTCGAATAGATAAAGATGTGGAAGACAA
AAGACAAAAAGCCATTGAAGAGTTTTTCACTAAGGATGTCATTGTACCCTCTCCTTGGAC
TGATCATGAAGGGAAGCAGCTTTCAGAGTCTCATTCCAGTAAATGTGTTAACATAAATAA
TGAATCTCCAATGGGAAGAAAGCTGACTATCCATTCTGAGAAAAGCAATGTTGCTTGCCA
GACATTGCTGTCTCTTCCTGTGGATTTTAATTTAGAAAAGATACTAGGTGACTATTTTAG
AGCTGATGAATTTGCAGATCAATCTCCTGGAAACCTCAGTTCTTCATCCCTCAGAAGAAA
GCTATTTTTAGATGGCAACGGAAGTATCTCTGACTCCTTATCTCCAGCTTCTCCCAGAAG
TCCTCGTAGCGGTGCTCAAGCATCACTTGAGGTTTTCTGTTCAATAGATTTATCTCCTGT
GCAGACCCCAAGTTCGGGGCAGTTTTCTTCTAGCCCTATCCAGGGTAGTGCAAAAAAATA
CAGTTTGGGAAGCATAACCAGTCCAACACCTATTTCTTCACCCACTTTCTCACCGATTGA
CTTTCAGATAGGAAAGACACCACTCTCAGAACAAAGGAAGTTTACTTTGCATTCTCCTGA
TGCTTCATCTGGGGCCACTTCTAATGGAATTACCAATCCGTGTATCAGAAGTCCTTATAT
AGATGGCTGCTCACCCATAAAAAATTGGTCTCCCATGAGACTCGAGGTGTGTAGAGGGGG
TGCTCAGTATCGGACCTCAGTGATCCGAATACCTTTTACCCTTGAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661790|emb|CAH72713.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661790|emb|CAH72713.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               345-544, gnl|bosTau2|chr12 (21781008-21780809)
               

               
               345-544, gnl|Hg17|chr13 (72217117-72217316)
               

               
               345-544, gnl|Mm7|chr14 (93461971-93462166)
               


               
               683-888, gnl|bosTau2|chr12 (21777493-21777288)
               

               
               683-888, gnl|Hg17|chr13 (72218633-72218838)
               

               
               683-888, gnl|Mm7|chr14 (93468460-93468651)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               345-544, gnl|bosTau2|chr12 (21781008-21780809)
               

               
               345-544, gnl|Hg17|chr13 (72217117-72217316)
               

               
               345-544, gnl|Mm7|chr14 (93461971-93462166)
               


               
               683-888, gnl|bosTau2|chr12 (21777493-21777288)
               

               
               683-888, gnl|Hg17|chr13 (72218633-72218838)
               

               
               683-888, gnl|Mm7|chr14 (93468460-93468651)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	345-544, gnl\|bosTau2\|chr12 (21781008-21780809)
	345-544, gnl\|Hg17\|chr13 (72217117-72217316)
	345-544, gnl\|Mm7\|chr14 (93461971-93462166)

	683-888, gnl\|bosTau2\|chr12 (21777493-21777288)
	683-888, gnl\|Hg17\|chr13 (72218633-72218838)
	683-888, gnl\|Mm7\|chr14 (93468460-93468651)