Ss1.1-Thy1-THY010088D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGACCGAGCAAGTGGGCGTACGGAGCGACCCCAGCGGCGTGGGATCTGCCTCTCTGCGA GCGGCCCGGGGCGGCGGCGGCGCCATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATC AGCCTTATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTACACTATCGACACCGAG AACTCTACAGTAGCTCTCGCCAAAGTTCGGTCCTTTGGTACAGAAGACAGACCAACAGAT CGTCCAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGATATT AAAGACCTAACTGTTTGTGAGCCACCAAAACCACAATGTTCTTTGCCTCAGGACCCAGCT ATCGTTCAGTCTTCACTAGGCTCATCTACTTCTTCATTCCAGTCAGTGGGCTCCTATGGA CCTTTTGGCAGGATGCCGACATACAGTCAATTCAGTCCAAGTTCATTAGTCGGGCAGCAG TTTGGGGCTGTTGGTGTTGCTGGAGGCTCCTTGACATCCTTTGGAACAGAAGCATCAAAC AGCGGTACCCTCTCCCAAAGTAGTGCAGTTGGTTCTGCCTTTACACAGGATACAAGATCT CTAAAAACACAATTATCTCAAGGTCGTTCAAGCCCTCAGTTAGACCCTTTGAGAAAAAGC CCAACCATGGAACAAGCAGTACAGACCGCCTCGGCCCACTTACCTGCTCCGGCACCTGTT GGGAGAAGGAGCCCTGTATCAACCAGGCCTTTACCATCTACCAGCCAAAAAGCAATAGAG AATCAAGAGCACAGGCGAGCTGAAGTACATAAAGTTTCAAGACCAGAAAGTGAGCAGCTC AGAAATGATAGCAAGAGACAAATAGTTCCAGGTGCTCCTTCAGCTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGACCGAGCAAGTGGGCGTACGGAGCGACCCCAGCGGCGTGGGATCTGCCTCTCTGCGA GCGGCCCGGGGCGGCGGCGGCGCCATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATC AGCCTTATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTACACTATCGACACCGAG AACTCTACAGTAGCTCTCGCCAAAGTTCGGTCCTTTGGTACAGAAGACAGACCAACAGAT CGTCCAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGATATT AAAGACCTAACTGTTTGTGAGCCACCAAAACCACAATGTTCTTTGCCTCAGGACCCAGCT ATCGTTCAGTCTTCACTAGGCTCATCTACTTCTTCATTCCAGTCAGTGGGCTCCTATGGA CCTTTTGGCAGGATGCCGACATACAGTCAATTCAGTCCAAGTTCATTAGTCGGGCAGCAG TTTGGGGCTGTTGGTGTTGCTGGAGGCTCCTTGACATCCTTTGGAACAGAAGCATCAAAC AGCGGTACCCTCTCCCAAAGTAGTGCAGTTGGTTCTGCCTTTACACAGGATACAAGATCT CTAAAAACACAATTATCTCAAGGTCGTTCAAGCCCTCAGTTAGACCCTTTGAGAAAAAGC CCAACCATGGAACAAGCAGTACAGACCGCCTCGGCCCACTTACCTGCTCCGGCACCTGTT GGGAGAAGGAGCCCTGTATCAACCAGGCCTTTACCATCTACCAGCCAAAAAGCAATAGAG AATCAAGAGCACAGGCGAGCTGAAGTACATAAAGTTTCAAGACCAGAAAGTGAGCAGCTC AGAAATGATAGCAAGAGACAAATAGTTCCAGGTGCTCCTTCAGCTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 660-779, - strand, RNAz p=0.530777 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 660-779, - strand, RNAz p=0.530777 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 94-484, gnl|bosTau2|chr26 (22257814-22258209) | |
| 94-484, gnl|Hg17|chr20 (60131133-60134872) | |
| 94-484, gnl|Mm7|chr2 (180526114-180528930) | |
| 200-368, gnl|bosTau2|chr13 (36197413-36197245) | |
| 200-368, gnl|canFam2|chr24 (49217652-49217863) | |
| 200-368, gnl|danRer3|chr23 (611472-611682) | |
| 200-368, gnl|dasNov1|scaffold_8402 (9173-9009) | |
| 200-368, gnl|echTel1|scaffold_268792 (566-722) | |
| 200-368, gnl|fr1|chrUn (148029459-148029645) | |
| 200-368, gnl|galGal2|chr20 (7456212-7456389) | |
| 200-368, gnl|hg17|chr20 (60133034-60133243) | |
| 200-368, gnl|Hg17|chr20 (60133062-60133230) | |
| 200-368, gnl|loxAfr1|scaffold_17216 (26254-26466) | |
| 200-368, gnl|mm7|chr2 (180527513-180527727) | |
| 200-368, gnl|Mm7|chr2 (180527542-180527710) | |
| 200-368, gnl|monDom2|scaffold_1 (179411206-179411402) | |
| 200-368, gnl|oryCun1|scaffold_156866 (4875-5041) | |
| 200-368, gnl|panTro1|chr21 (63142197-63142406) | |
| 200-368, gnl|rheMac2|chr10 (2420843-2420634) | |
| 200-368, gnl|rn3|chr3 (168996952-168997150) | |
| 200-368, gnl|tetNig1|chr9 (7163325-7163157) | |
| 200-368, gnl|xenTro1|scaffold_220 (379697-379895) | |
| 621-799, gnl|bosTau2|chr18 (37803352-37803530) | |
| 621-799, gnl|canFam2|chr1 (120981862-120981681) | |
| 621-799, gnl|danRer3|chr25 (28415754-28415563) | |
| 621-799, gnl|dasNov1|scaffold_166877 (4221-4040) | |
| 621-799, gnl|echTel1|scaffold_216777 (7677-7858) | |
| 621-799, gnl|galGal2|chr11 (11162248-11162429) | |
| 621-799, gnl|hg17|chr19 (39397868-39398049) | |
| 621-799, gnl|Hg17|chr19 (39397867-39398045) | |
| 621-799, gnl|loxAfr1|scaffold_8115 (35399-35218) | |
| 621-799, gnl|mm7|chr7 (31245433-31245252) | |
| 621-799, gnl|Mm7|chr7 (31245432-31245254) | |
| 621-799, gnl|monDom2|scaffold_35 (1505394-1505213) | |
| 621-799, gnl|oryCun1|scaffold_202707 (28512-28693) | |
| 621-799, gnl|panTro1|chr20 (35920246-35920427) | |
| 621-799, gnl|rheMac2|chr19 (40772380-40772561) | |
| 621-799, gnl|rn3|chr1 (86888123-86887942) | |
| 621-799, gnl|tetNig1|chrUn_random (35970270-35970077) | |
| 621-799, gnl|xenTro1|scaffold_129 (1595057-1595241) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-484, gnl|bosTau2|chr26 (22257814-22258209) | |
| 94-484, gnl|Hg17|chr20 (60131133-60134872) | |
| 94-484, gnl|Mm7|chr2 (180526114-180528930) | |
| 200-368, gnl|bosTau2|chr13 (36197413-36197245) | |
| 200-368, gnl|canFam2|chr24 (49217652-49217863) | |
| 200-368, gnl|danRer3|chr23 (611472-611682) | |
| 200-368, gnl|dasNov1|scaffold_8402 (9173-9009) | |
| 200-368, gnl|echTel1|scaffold_268792 (566-722) | |
| 200-368, gnl|fr1|chrUn (148029459-148029645) | |
| 200-368, gnl|galGal2|chr20 (7456212-7456389) | |
| 200-368, gnl|hg17|chr20 (60133034-60133243) | |
| 200-368, gnl|Hg17|chr20 (60133062-60133230) | |
| 200-368, gnl|loxAfr1|scaffold_17216 (26254-26466) | |
| 200-368, gnl|mm7|chr2 (180527513-180527727) | |
| 200-368, gnl|Mm7|chr2 (180527542-180527710) | |
| 200-368, gnl|monDom2|scaffold_1 (179411206-179411402) | |
| 200-368, gnl|oryCun1|scaffold_156866 (4875-5041) | |
| 200-368, gnl|panTro1|chr21 (63142197-63142406) | |
| 200-368, gnl|rheMac2|chr10 (2420843-2420634) | |
| 200-368, gnl|rn3|chr3 (168996952-168997150) | |
| 200-368, gnl|tetNig1|chr9 (7163325-7163157) | |
| 200-368, gnl|xenTro1|scaffold_220 (379697-379895) | |
| 621-799, gnl|bosTau2|chr18 (37803352-37803530) | |
| 621-799, gnl|canFam2|chr1 (120981862-120981681) | |
| 621-799, gnl|danRer3|chr25 (28415754-28415563) | |
| 621-799, gnl|dasNov1|scaffold_166877 (4221-4040) | |
| 621-799, gnl|echTel1|scaffold_216777 (7677-7858) | |
| 621-799, gnl|galGal2|chr11 (11162248-11162429) | |
| 621-799, gnl|hg17|chr19 (39397868-39398049) | |
| 621-799, gnl|Hg17|chr19 (39397867-39398045) | |
| 621-799, gnl|loxAfr1|scaffold_8115 (35399-35218) | |
| 621-799, gnl|mm7|chr7 (31245433-31245252) | |
| 621-799, gnl|Mm7|chr7 (31245432-31245254) | |
| 621-799, gnl|monDom2|scaffold_35 (1505394-1505213) | |
| 621-799, gnl|oryCun1|scaffold_202707 (28512-28693) | |
| 621-799, gnl|panTro1|chr20 (35920246-35920427) | |
| 621-799, gnl|rheMac2|chr19 (40772380-40772561) | |
| 621-799, gnl|rn3|chr1 (86888123-86887942) | |
| 621-799, gnl|tetNig1|chrUn_random (35970270-35970077) | |
| 621-799, gnl|xenTro1|scaffold_129 (1595057-1595241) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.207814) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cki (0.165235) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cki (0.165235) |