Non-Coding RNA Search

Ss1.1-Thy1-THY010088D06.5

Sequence:


               
               GTCTCTCTCGGGACAGGACGTAGGATCATTTGCCTATATTACAATTAAAGATAGAATACC
ACAGATCTTAACCAAGGCTATTGATACACTGCATCGACACAAAAGTGAATTTTTCGAGAA
ACATGGAGAGAAAGGCATGGAAGCTGAAAAGAAAGCAATTTCTCTTCTGTCTAAATTACG
GAATGAATTGCAAACAGATAAACCAATAGTTCCTTTAGTTGAAAAGTTCGTTGATACTGA
CACATGGAATCAGTACCTAGAATATCAACAGAGCCTTTTAAATGAAAGTGATGGGAAACC
AAGGTGGTTTCTTTCCCCGTGGTTGTTTGTGGAATGCTACATGTATCGGAGGATTCATGA
AGCAATTATCCAAAGTCCGCCAATCGATGACTTTGATGTATTTAAAGAATCAAAAGAGCA
AAGTTTCTTTGAGTCGCAAGAATCTATCATTGCTTTATGTACTCACCTGCAAGAGTTGAT
GAAAACTATTGAAGACCTAGATGAAAATCAGTTGAAAGATGAGTTTTTTAAAGTTCTTCA
GATATCACTGTGGGGAAATAAGTGTGATCTCTCTCTATCAGGCGGGGAAACTAGCTTTCA
GAAGACCAATATAGTAAATTCTTTGGAAGACCTAAAACCTTTCATTTTAGTGAATAACAT
GGAACAGCTTTGGTCGTTGCTCAGCAATTGCAAGAAAACAAGAGAAAAAGCATCTATTAC
TCGAGTGATTATTGTTCTGGACAATTCTGGGTTTGAACTTGTTACAGATTTAGTATTAGC
TGACTTCTTGTTGTCCTCTAAACTGGCTACTGAGATCCATTTTTACGGAAAAATGATTCC
ATGGTTTGTTTCTGATACTACTGTGCGTGATTTTAACTGGTTACTCAAACAGCTGAAACA
TTCTAATCATAAGTGGATGTCCAGGTGTGGGGTTGACTGGGAAAACCATATAAAAACAGG
CAGGTGGGTTTACCTGGATCATATGTTTTGGACTCTACCTCATGAATTCAGCGCAATGTC
TCAAGTTGCTCCTGACTTATATGCCGCACTACAGAAGGCACATTTAATTTTATTTAAGGG
GGACCTGAATTACAGGAAGTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCTCTCGGGACAGGACGTAGGATCATTTGCCTATATTACAATTAAAGATAGAATACC
ACAGATCTTAACCAAGGCTATTGATACACTGCATCGACACAAAAGTGAATTTTTCGAGAA
ACATGGAGAGAAAGGCATGGAAGCTGAAAAGAAAGCAATTTCTCTTCTGTCTAAATTACG
GAATGAATTGCAAACAGATAAACCAATAGTTCCTTTAGTTGAAAAGTTCGTTGATACTGA
CACATGGAATCAGTACCTAGAATATCAACAGAGCCTTTTAAATGAAAGTGATGGGAAACC
AAGGTGGTTTCTTTCCCCGTGGTTGTTTGTGGAATGCTACATGTATCGGAGGATTCATGA
AGCAATTATCCAAAGTCCGCCAATCGATGACTTTGATGTATTTAAAGAATCAAAAGAGCA
AAGTTTCTTTGAGTCGCAAGAATCTATCATTGCTTTATGTACTCACCTGCAAGAGTTGAT
GAAAACTATTGAAGACCTAGATGAAAATCAGTTGAAAGATGAGTTTTTTAAAGTTCTTCA
GATATCACTGTGGGGAAATAAGTGTGATCTCTCTCTATCAGGCGGGGAAACTAGCTTTCA
GAAGACCAATATAGTAAATTCTTTGGAAGACCTAAAACCTTTCATTTTAGTGAATAACAT
GGAACAGCTTTGGTCGTTGCTCAGCAATTGCAAGAAAACAAGAGAAAAAGCATCTATTAC
TCGAGTGATTATTGTTCTGGACAATTCTGGGTTTGAACTTGTTACAGATTTAGTATTAGC
TGACTTCTTGTTGTCCTCTAAACTGGCTACTGAGATCCATTTTTACGGAAAAATGATTCC
ATGGTTTGTTTCTGATACTACTGTGCGTGATTTTAACTGGTTACTCAAACAGCTGAAACA
TTCTAATCATAAGTGGATGTCCAGGTGTGGGGTTGACTGGGAAAACCATATAAAAACAGG
CAGGTGGGTTTACCTGGATCATATGTTTTGGACTCTACCTCATGAATTCAGCGCAATGTC
TCAAGTTGCTCCTGACTTATATGCCGCACTACAGAAGGCACATTTAATTTTATTTAAGGG
GGACCTGAATTACAGGAAGTTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13195680|ref|NP_077223.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13195680|ref|NP_077223.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               208-327, + strand, RNAz p=0.84293

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-327, + strand, RNAz p=0.84293

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               129-375, gnl|bosTau2|chr9 (52809728-52809482)
               

               
               129-375, gnl|canFam2|chr1 (44848771-44849006)
               

               
               129-375, gnl|dasNov1|scaffold_73956 (1279-1044)
               

               
               129-375, gnl|echTel1|scaffold_316242 (13271-13036)
               

               
               129-375, gnl|fr1|chrUn (133227886-133227655)
               

               
               129-375, gnl|galGal2|chr3 (47856854-47857086)
               

               
               129-375, gnl|hg17|chr6 (151871575-151871810)
               

               
               129-375, gnl|Hg17|chr6 (151871575-151871821)
               

               
               129-375, gnl|mm7|chr10 (5907689-5907454)
               

               
               129-375, gnl|Mm7|chr10 (5907687-5907441)
               

               
               129-375, gnl|monDom2|scaffold_0 (54468291-54468071)
               

               
               129-375, gnl|oryCun1|scaffold_93380 (5256-5491)
               

               
               129-375, gnl|panTro1|chr5 (155379277-155379512)
               

               
               129-375, gnl|rheMac2|chr4 (111626258-111626023)
               

               
               129-375, gnl|rn3|chr1 (35153255-35153490)
               

               
               129-375, gnl|tetNig1|chr14 (3192257-3192488)
               

               
               129-375, gnl|xenTro1|scaffold_10 (1148305-1148537)
               


               
               534-1104, gnl|bosTau2|chr9 (52802242-52801672)
               

               
               534-1104, gnl|Hg17|chr6 (151881584-151882154)
               

               
               534-1104, gnl|Mm7|chr10 (5893713-5893146)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-375, gnl|bosTau2|chr9 (52809728-52809482)
               

               
               129-375, gnl|canFam2|chr1 (44848771-44849006)
               

               
               129-375, gnl|dasNov1|scaffold_73956 (1279-1044)
               

               
               129-375, gnl|echTel1|scaffold_316242 (13271-13036)
               

               
               129-375, gnl|fr1|chrUn (133227886-133227655)
               

               
               129-375, gnl|galGal2|chr3 (47856854-47857086)
               

               
               129-375, gnl|hg17|chr6 (151871575-151871810)
               

               
               129-375, gnl|Hg17|chr6 (151871575-151871821)
               

               
               129-375, gnl|mm7|chr10 (5907689-5907454)
               

               
               129-375, gnl|Mm7|chr10 (5907687-5907441)
               

               
               129-375, gnl|monDom2|scaffold_0 (54468291-54468071)
               

               
               129-375, gnl|oryCun1|scaffold_93380 (5256-5491)
               

               
               129-375, gnl|panTro1|chr5 (155379277-155379512)
               

               
               129-375, gnl|rheMac2|chr4 (111626258-111626023)
               

               
               129-375, gnl|rn3|chr1 (35153255-35153490)
               

               
               129-375, gnl|tetNig1|chr14 (3192257-3192488)
               

               
               129-375, gnl|xenTro1|scaffold_10 (1148305-1148537)
               


               
               534-1104, gnl|bosTau2|chr9 (52802242-52801672)
               

               
               534-1104, gnl|Hg17|chr6 (151881584-151882154)
               

               
               534-1104, gnl|Mm7|chr10 (5893713-5893146)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)

	129-375, gnl\|bosTau2\|chr9 (52809728-52809482)
	129-375, gnl\|canFam2\|chr1 (44848771-44849006)
	129-375, gnl\|dasNov1\|scaffold_73956 (1279-1044)
	129-375, gnl\|echTel1\|scaffold_316242 (13271-13036)
	129-375, gnl\|fr1\|chrUn (133227886-133227655)
	129-375, gnl\|galGal2\|chr3 (47856854-47857086)
	129-375, gnl\|hg17\|chr6 (151871575-151871810)
	129-375, gnl\|Hg17\|chr6 (151871575-151871821)
	129-375, gnl\|mm7\|chr10 (5907689-5907454)
	129-375, gnl\|Mm7\|chr10 (5907687-5907441)
	129-375, gnl\|monDom2\|scaffold_0 (54468291-54468071)
	129-375, gnl\|oryCun1\|scaffold_93380 (5256-5491)
	129-375, gnl\|panTro1\|chr5 (155379277-155379512)
	129-375, gnl\|rheMac2\|chr4 (111626258-111626023)
	129-375, gnl\|rn3\|chr1 (35153255-35153490)
	129-375, gnl\|tetNig1\|chr14 (3192257-3192488)
	129-375, gnl\|xenTro1\|scaffold_10 (1148305-1148537)

	534-1104, gnl\|bosTau2\|chr9 (52802242-52801672)
	534-1104, gnl\|Hg17\|chr6 (151881584-151882154)
	534-1104, gnl\|Mm7\|chr10 (5893713-5893146)