Ss1.1-Thy1-THY010088E09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGCCACCGCCAACGGCCACAGCCACCGCCGCGGGCCAGGAGAGGTTGTCCTTTGCAGAA ATAATTTCAGCAGGCTGGATTATAAGGAAGACAAAGCCAGAAGGCCGGAGGCCAAGTACG ACAGATTTGCCAGGTTCCATGCGAAACCTAGTCTGCTTATCACACAATCTGGAGAAGGAC GAGAACCCGGGTTCGCCGTGATGTCACCACCGGCGGCTGGGAGCCGGGGAAAGCCACACA TCCTCTCGGAATCTGGTTTCGCTTCCGCGCAAAGGACCTCACAGCCTCGCCCGGCCTCGC TCCTGGCTCGGTTCGGAGGGTCAGCGGGACGGTGTCCGGCGTGCGCGCGCGGTTCGCCAA GCCTCTCGCGCGCCTGCAGCCTGGCGCCCGCGGTGCTGGAGGTGAAAGTGGTCTGTTCGG AGGCTGTGGACTTGCCCTGCCCCGTCCCCTGGGACCCGCAGGTCCGCTACACGGTGTCCT GGGCCAAGCTGGCCGGCGGCCGTGCAGAGAGCCTGGAGGTGCCGGGGGAAGAGCTGCGGT CCGCTCTCCAGAATGGCTCTTCGGGGGCCCCCAGTGGGAGGCTGTATTCTCTGAAGATCC AGAACACTACCAGCTGCAACTCGGGGGCCTACCGCTGCACTCTGGAGGACCCGGAGACCC AGAGAAACCTCAGCGGCACCGTGATCTTGAAAGTGACAGGATGCTCTAAGGGACGCAAAG AAGATACTTTTAAGAAATACAGAGCTGAGATTGTCCTGCTGTTGGCTCTGGTCACTTTCT ACTTAACACTCATCATTTTCACCTGCAAGTTTGCACGACAGCAGAGTATTTTTCCAGATT TTTCTAAACCGGTCGTAGAACATGCTTTTCTCCCCGTCACCTCCCCAAATAAGCCCTTGG AGCCAGTGACTCTTCACAAGACAGAGCTGGTATGAGCAGGATTTCTGCAAGCTGTTTTTT TCCCGAGTCGAAGGCTCCATGTCCCACTGGACAGAAGCACGAGCCCCACCCCAAAGATGA CATCCTTCCTGTGAAGTCCTTCGAGTGACGGAAACATGCAAAAGGGGGTCCCACCCCACT TTTCGTGAGCAGGACCTTGGGAACTAGGATGTGACCCCCACGAAGCCTGGGGCCGCCCGG CAGGTGCTTTCGAGTGCTGCTCCTTTATTCTGAGCGTTTTATTCAGCTACCTGGTCAACT CTTTGGACTTTTTTTTTCAGTGCTATGGAAGCTACGGTGATGAGATGTTGCAAGAGGAGC TTGGGAACTGTGCATGTCTAGCGCTGGCCCTGTGCCGACTTTTGAGGACAGCTGTCCTCT TCCACATCTGGAGCGCATCTCTGAATGCCAGTTTTTTTCCCCTCCAAACCTAGATGCTTT ATGTCTGGGAGATGTTGCCAAGCCAAGACGTGAGACAGTGGGAAATGCTTAGCAAATAAT TTCCCTGTGTGAAGGCCCTGCTCTGACCAAGGCGTTTGATGTGTATACAGACCTAACAAG GCGATGAACGGTCCCCAGCAGGGCCCTCTTCTCCAGGAAGGACTTCCATAAAGAAGCAAT AGAGAAGACTTCCACGTTTATTTTTATAGCTGTATATACGTGTCGAAGAAGGACTTGGGT TTCTTTTCCTTTGTAAATCTCCATCTTCAGTTAGAGACTGTTGGCAACTACAAGCAAGCT GCCCAGGGACGGTGAGAAGACGTCAGAGAGGGTGACCTGCGGAGGCCGAGCTACGTGGTG ACCTGATGGCCATGCTGGACCCATCCTGCAGCCTGGGTTGTCCCACCCCCTAGCTGTCTG ATCGTGGGCAAGACCCGTGTGGTTTCTGCTTTCTCAGATGCAAACCAAAAGGCCATAATG CCTTTCCTGGTTCATGTTTTCCATCGTTCCAAACAAAGAAGGCAATGGAGGAGGCGTGCC CACCGTCTTCATTGGGAATTCCTCTGGGGAAGGGAGCCCAGTGCCGCGTTCTTGAAGCCC CAGCCAGAAGTCCCCCAAAACCACGCGGAGAAGCTCTCTCATGTTCCACTGGCGTTTTGG CAGCTGTTGTGTTTCCTTATCAAACTTGGCCCTTCCCCTCCTTCTTTCCCAAAGAGGCTG GGAGCCTACACTAATATGAGAGGGGAAGGGATGCCAGGGGTCATGTTTCTGTCTCTTTGT CTGAGCGTTCGTGTCATTAAATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGCCACCGCCAACGGCCACAGCCACCGCCGCGGGCCAGGAGAGGTTGTCCTTTGCAGAA ATAATTTCAGCAGGCTGGATTATAAGGAAGACAAAGCCAGAAGGCCGGAGGCCAAGTACG ACAGATTTGCCAGGTTCCATGCGAAACCTAGTCTGCTTATCACACAATCTGGAGAAGGAC GAGAACCCGGGTTCGCCGTGATGTCACCACCGGCGGCTGGGAGCCGGGGAAAGCCACACA TCCTCTCGGAATCTGGTTTCGCTTCCGCGCAAAGGACCTCACAGCCTCGCCCGGCCTCGC TCCTGGCTCGGTTCGGAGGGTCAGCGGGACGGTGTCCGGCGTGCGCGCGCGGTTCGCCAA GCCTCTCGCGCGCCTGCAGCCTGGCGCCCGCGGTGCTGGAGGTGAAAGTGGTCTGTTCGG AGGCTGTGGACTTGCCCTGCCCCGTCCCCTGGGACCCGCAGGTCCGCTACACGGTGTCCT GGGCCAAGCTGGCCGGCGGCCGTGCAGAGAGCCTGGAGGTGCCGGGGGAAGAGCTGCGGT CCGCTCTCCAGAATGGCTCTTCGGGGGCCCCCAGTGGGAGGCTGTATTCTCTGAAGATCC AGAACACTACCAGCTGCAACTCGGGGGCCTACCGCTGCACTCTGGAGGACCCGGAGACCC AGAGAAACCTCAGCGGCACCGTGATCTTGAAAGTGACAGGATGCTCTAAGGGACGCAAAG AAGATACTTTTAAGAAATACAGAGCTGAGATTGTCCTGCTGTTGGCTCTGGTCACTTTCT ACTTAACACTCATCATTTTCACCTGCAAGTTTGCACGACAGCAGAGTATTTTTCCAGATT TTTCTAAACCGGTCGTAGAACATGCTTTTCTCCCCGTCACCTCCCCAAATAAGCCCTTGG AGCCAGTGACTCTTCACAAGACAGAGCTGGTATGAGCAGGATTTCTGCAAGCTGTTTTTT TCCCGAGTCGAAGGCTCCATGTCCCACTGGACAGAAGCACGAGCCCCACCCCAAAGATGA CATCCTTCCTGTGAAGTCCTTCGAGTGACGGAAACATGCAAAAGGGGGTCCCACCCCACT TTTCGTGAGCAGGACCTTGGGAACTAGGATGTGACCCCCACGAAGCCTGGGGCCGCCCGG CAGGTGCTTTCGAGTGCTGCTCCTTTATTCTGAGCGTTTTATTCAGCTACCTGGTCAACT CTTTGGACTTTTTTTTTCAGTGCTATGGAAGCTACGGTGATGAGATGTTGCAAGAGGAGC TTGGGAACTGTGCATGTCTAGCGCTGGCCCTGTGCCGACTTTTGAGGACAGCTGTCCTCT TCCACATCTGGAGCGCATCTCTGAATGCCAGTTTTTTTCCCCTCCAAACCTAGATGCTTT ATGTCTGGGAGATGTTGCCAAGCCAAGACGTGAGACAGTGGGAAATGCTTAGCAAATAAT TTCCCTGTGTGAAGGCCCTGCTCTGACCAAGGCGTTTGATGTGTATACAGACCTAACAAG GCGATGAACGGTCCCCAGCAGGGCCCTCTTCTCCAGGAAGGACTTCCATAAAGAAGCAAT AGAGAAGACTTCCACGTTTATTTTTATAGCTGTATATACGTGTCGAAGAAGGACTTGGGT TTCTTTTCCTTTGTAAATCTCCATCTTCAGTTAGAGACTGTTGGCAACTACAAGCAAGCT GCCCAGGGACGGTGAGAAGACGTCAGAGAGGGTGACCTGCGGAGGCCGAGCTACGTGGTG ACCTGATGGCCATGCTGGACCCATCCTGCAGCCTGGGTTGTCCCACCCCCTAGCTGTCTG ATCGTGGGCAAGACCCGTGTGGTTTCTGCTTTCTCAGATGCAAACCAAAAGGCCATAATG CCTTTCCTGGTTCATGTTTTCCATCGTTCCAAACAAAGAAGGCAATGGAGGAGGCGTGCC CACCGTCTTCATTGGGAATTCCTCTGGGGAAGGGAGCCCAGTGCCGCGTTCTTGAAGCCC CAGCCAGAAGTCCCCCAAAACCACGCGGAGAAGCTCTCTCATGTTCCACTGGCGTTTTGG CAGCTGTTGTGTTTCCTTATCAAACTTGGCCCTTCCCCTCCTTCTTTCCCAAAGAGGCTG GGAGCCTACACTAATATGAGAGGGGAAGGGATGCCAGGGGTCATGTTTCTGTCTCTTTGT CTGAGCGTTCGTGTCATTAAATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1287-1403, + strand, RNAz p=0.987283 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1287-1403, + strand, RNAz p=0.987283 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK223315, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 107-321, gnl|bosTau2|chr14 (47184255-47184045) | |
| 107-321, gnl|canFam2|chr35 (16497854-16497992) | |
| 107-321, gnl|hg17|chr6 (14225450-14225590) | |
| 107-321, gnl|Hg17|chr6 (14225418-14225643) | |
| 107-321, gnl|loxAfr1|scaffold_1568 (21084-21248) | |
| 107-321, gnl|mm7|chr13 (43225192-43225288) | |
| 107-321, gnl|panTro1|chr5 (14519052-14519192) | |
| 107-321, gnl|rheMac2|chr4 (14072555-14072696) | |
| 107-321, gnl|rn3|chr17 (26728593-26728496) | |
| 487-700, gnl|bosTau2|chr14 (47170210-47169997) | |
| 487-700, gnl|canFam2|chr35 (16512121-16512361) | |
| 487-700, gnl|dasNov1|scaffold_159936 (1421-1200) | |
| 487-700, gnl|echTel1|scaffold_239474 (670-940) | |
| 487-700, gnl|hg17|chr6 (14239714-14239979) | |
| 487-700, gnl|Hg17|chr6 (14239728-14239959) | |
| 487-700, gnl|loxAfr1|scaffold_1568 (38555-38822) | |
| 487-700, gnl|mm7|chr13 (43237876-43238104) | |
| 487-700, gnl|Mm7|chr13 (43237890-43238088) | |
| 487-700, gnl|oryCun1|scaffold_211155 (4834-5098) | |
| 487-700, gnl|panTro1|chr5 (14533434-14533699) | |
| 487-700, gnl|rheMac2|chr4 (14086670-14086935) | |
| 487-700, gnl|rn3|chr17 (26713396-26713168) | |
| 807-1852, gnl|bosTau2|chr23 (37946042-37944952) | |
| 807-1852, gnl|Hg17|chr6 (14243318-14244367) | |
| 807-1852, gnl|Mm7|chr13 (43241916-43242978) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-321, gnl|bosTau2|chr14 (47184255-47184045) | |
| 107-321, gnl|canFam2|chr35 (16497854-16497992) | |
| 107-321, gnl|hg17|chr6 (14225450-14225590) | |
| 107-321, gnl|Hg17|chr6 (14225418-14225643) | |
| 107-321, gnl|loxAfr1|scaffold_1568 (21084-21248) | |
| 107-321, gnl|mm7|chr13 (43225192-43225288) | |
| 107-321, gnl|panTro1|chr5 (14519052-14519192) | |
| 107-321, gnl|rheMac2|chr4 (14072555-14072696) | |
| 107-321, gnl|rn3|chr17 (26728593-26728496) | |
| 487-700, gnl|bosTau2|chr14 (47170210-47169997) | |
| 487-700, gnl|canFam2|chr35 (16512121-16512361) | |
| 487-700, gnl|dasNov1|scaffold_159936 (1421-1200) | |
| 487-700, gnl|echTel1|scaffold_239474 (670-940) | |
| 487-700, gnl|hg17|chr6 (14239714-14239979) | |
| 487-700, gnl|Hg17|chr6 (14239728-14239959) | |
| 487-700, gnl|loxAfr1|scaffold_1568 (38555-38822) | |
| 487-700, gnl|mm7|chr13 (43237876-43238104) | |
| 487-700, gnl|Mm7|chr13 (43237890-43238088) | |
| 487-700, gnl|oryCun1|scaffold_211155 (4834-5098) | |
| 487-700, gnl|panTro1|chr5 (14533434-14533699) | |
| 487-700, gnl|rheMac2|chr4 (14086670-14086935) | |
| 487-700, gnl|rn3|chr17 (26713396-26713168) | |
| 807-1852, gnl|bosTau2|chr23 (37946042-37944952) | |
| 807-1852, gnl|Hg17|chr6 (14243318-14244367) | |
| 807-1852, gnl|Mm7|chr13 (43241916-43242978) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cov (0.396458) | |
| ece (0.229305) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ebs (0.118301) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| ece (0.229305) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ebs (0.118301) |