Non-Coding RNA Search

Ss1.1-Thy1-THY010089C10.5

Sequence:


               
               GGGTGGTGGGCCTGAGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTG
GAGCCTCCTTTATTGAGCTGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCA
CCGTCCTGCTGCCCGAGGCCCAGCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACG
CCAGCCTCACCAGGTCATCACCTGCCCAGCCACCCCCTCCCCCTGGCCCGCTGGAACCCT
GCCGCGGGCCAGGGCATGAGCTAATGCGCCCTTGGGCCTGACCTCGCCCCACTTCCCCTC
CACCAGGTGCCGCCTGGGTGACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGT
CGTCAGGTTCATCCGCAGGTAGGTGGCCCCCTGGGTCACTGAGGGGCCCTCCTTGTGCCC
TGGGTTTCTCAGCAGTCGTCAGGTTCATCCGCAGGCTGGGCCAGACCCTGAGTGTCCGAG
GAGAAGACACTGGCGAGGACGTGTTCTCTGAGGCCCTGGGCAGGGCGGTGGGGCAGTGGC
CGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAGAGCAGCATCCTGGATTCCTCCGAGG
TCTGGCTCCCACCTCCCATCCTTGGGCTGACCGTCCCCCCCAACCCATAGCCCTCCTGTT
GGGAAACCTCTAGGCAGAAGAAAAGACTCGGCCTCCTTTGCTGCTCCTAACGAAAGTTCT
TCCTCATATCTGACTCCCAGCCCTCCTGCTGCAGTCTCTACCCATTTCCTTTCCAGCAAC
CCTACTCCCTGCCAGGAACCTCCTCTTCCCAACTTATGAACCTCAGATGGGAAAGAACAG
GTGGGGGCAATGGGCGCTGGCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGGTGGGCCTGAGTCTGTGGCCAAAGCAGCCCCGTGGCCTCTACCTTCTGCCCCCTG
GAGCCTCCTTTATTGAGCTGCTCCCACTGAAGGAAGGAGCCCAAGAAGATGCTGCCCCCA
CCGTCCTGCTGCCCGAGGCCCAGCAGGGCAAGGAGTACGAGTTGGTGCTGACTGACCACG
CCAGCCTCACCAGGTCATCACCTGCCCAGCCACCCCCTCCCCCTGGCCCGCTGGAACCCT
GCCGCGGGCCAGGGCATGAGCTAATGCGCCCTTGGGCCTGACCTCGCCCCACTTCCCCTC
CACCAGGTGCCGCCTGGGTGACGTGGTCCAGGTGGTTGGTGCCTACAATCAGTGTCCAGT
CGTCAGGTTCATCCGCAGGTAGGTGGCCCCCTGGGTCACTGAGGGGCCCTCCTTGTGCCC
TGGGTTTCTCAGCAGTCGTCAGGTTCATCCGCAGGCTGGGCCAGACCCTGAGTGTCCGAG
GAGAAGACACTGGCGAGGACGTGTTCTCTGAGGCCCTGGGCAGGGCGGTGGGGCAGTGGC
CGGGGGCCAAGCTGTTGGACCATGGCTGTGTGGAGAGCAGCATCCTGGATTCCTCCGAGG
TCTGGCTCCCACCTCCCATCCTTGGGCTGACCGTCCCCCCCAACCCATAGCCCTCCTGTT
GGGAAACCTCTAGGCAGAAGAAAAGACTCGGCCTCCTTTGCTGCTCCTAACGAAAGTTCT
TCCTCATATCTGACTCCCAGCCCTCCTGCTGCAGTCTCTACCCATTTCCTTTCCAGCAAC
CCTACTCCCTGCCAGGAACCTCCTCTTCCCAACTTATGAACCTCAGATGGGAAAGAACAG
GTGGGGGCAATGGGCGCTGGCTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-160, - strand, RNAz p=0.987325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-160, - strand, RNAz p=0.987325

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-823, gnl|bosTau2|chr19 (36700994-36700184)
               

               
               1-823, gnl|Hg17|chr17 (37596754-37595907)
               

               
               1-823, gnl|Mm7|chr11 (100877616-100876499)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-823, gnl|bosTau2|chr19 (36700994-36700184)
               

               
               1-823, gnl|Hg17|chr17 (37596754-37595907)
               

               
               1-823, gnl|Mm7|chr11 (100877616-100876499)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               cli (0.152812)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               eep (0.122564)

	1-823, gnl\|bosTau2\|chr19 (36700994-36700184)
	1-823, gnl\|Hg17\|chr17 (37596754-37595907)
	1-823, gnl\|Mm7\|chr11 (100877616-100876499)