Ss1.1-Thy1-THY010089D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCACAGCTCCGCGGAGCTGAACTGTGGATTGGCCCACTTTGTCAGGGAGGTGCGGAGGC CGAACGGAGAGAGTTACGCACCCGACAGCGTCTATTATCTCTGCCTTGGCATCCAGGAGT ACTTGTGTGGTAGTAGTCGGAAGGACAACATATTTATTGATCCTGGATACCAGACATTCG AGCAAGAATTGAATAAAATACTCCGAAGTTGGCAACCAAGCATTCTTCCAGACGGGTCGA TATTTTCCCGCGTTGAAGAAGACTATCTCTGGAGGATACAACAGCTGGGCTCGCACTCGC CAGTGGCTCTTCTGAACACCCTCTTCTACTTCAACACTAAGTATTTTGGCCTGAAGACGG TGGAACAACACCTACGCCTTTCCTTTGGCACCGTGTGTAGGCGTTGGAAAAAAAACCCTT TAACGATGGAGAGTAAAGCGTGTCTCCGGTACCAGGCGTCTTCCTTGTGTGGAGCAGATA ACGAAGATAAGATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTGTTTGAAC AAATTGAAAATACAGCCAATCCTTCCAGATGTCCTGTGAAAATGTTTGAGTGCTACCTGT CTAAGAGTCCACAGAATCTTAATCAGAGGACGGATGTGTTTTATTTGCAACCCGAATGCT CTAGTTCTGCAGAAAGCCCTGTCTGGTACACGTCTGCTTCACTGGACCGAAACACCTTGG AAAATATGCTTGTACGGGTTCTTTTAGTCAAAGATATTTATGATAAAGACAATTATGAAC TGGATGAAGACACAGACTGAAAAGGAACGTTTCAGAAGCAGTCGGGATAAAACAGCATTA GATAGTCATGCTGCTAGGTCTTTTACTATGGAAAACATTTCAAGTTTACTCCTCCTGTTT TGCGTTTTGTAGCAGTGCACCCGTTCTGGGTCCTACCGTGTAAATAATCTGTGAGTGAAG GTTGCCATTATTCTATGTAGTGGTTTTAGGATACTTACAAATACATTCAGATTCTTTTTT TTATTCTTATTTATTTGATTAGGTATGTTTGTAACTTTTTACATGACCGAATATGAATGC GAACGTGCCATGTATAGTTTCCCGTCGCAGGAGCCTCCGTGCTGCCCAGCTCTGCTGTTG CCGAGCCGCCTGGCAGGGGTGCTTCTGGGTTCTGACCAGATGGTTGTGTGTGGGGAGCAG CTACTAAAAGTTTAGAACTTGCAGTGTCTTTCAGAATTTTTAAAATAAACTGTAAACTAA TAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCACAGCTCCGCGGAGCTGAACTGTGGATTGGCCCACTTTGTCAGGGAGGTGCGGAGGC CGAACGGAGAGAGTTACGCACCCGACAGCGTCTATTATCTCTGCCTTGGCATCCAGGAGT ACTTGTGTGGTAGTAGTCGGAAGGACAACATATTTATTGATCCTGGATACCAGACATTCG AGCAAGAATTGAATAAAATACTCCGAAGTTGGCAACCAAGCATTCTTCCAGACGGGTCGA TATTTTCCCGCGTTGAAGAAGACTATCTCTGGAGGATACAACAGCTGGGCTCGCACTCGC CAGTGGCTCTTCTGAACACCCTCTTCTACTTCAACACTAAGTATTTTGGCCTGAAGACGG TGGAACAACACCTACGCCTTTCCTTTGGCACCGTGTGTAGGCGTTGGAAAAAAAACCCTT TAACGATGGAGAGTAAAGCGTGTCTCCGGTACCAGGCGTCTTCCTTGTGTGGAGCAGATA ACGAAGATAAGATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTGTTTGAAC AAATTGAAAATACAGCCAATCCTTCCAGATGTCCTGTGAAAATGTTTGAGTGCTACCTGT CTAAGAGTCCACAGAATCTTAATCAGAGGACGGATGTGTTTTATTTGCAACCCGAATGCT CTAGTTCTGCAGAAAGCCCTGTCTGGTACACGTCTGCTTCACTGGACCGAAACACCTTGG AAAATATGCTTGTACGGGTTCTTTTAGTCAAAGATATTTATGATAAAGACAATTATGAAC TGGATGAAGACACAGACTGAAAAGGAACGTTTCAGAAGCAGTCGGGATAAAACAGCATTA GATAGTCATGCTGCTAGGTCTTTTACTATGGAAAACATTTCAAGTTTACTCCTCCTGTTT TGCGTTTTGTAGCAGTGCACCCGTTCTGGGTCCTACCGTGTAAATAATCTGTGAGTGAAG GTTGCCATTATTCTATGTAGTGGTTTTAGGATACTTACAAATACATTCAGATTCTTTTTT TTATTCTTATTTATTTGATTAGGTATGTTTGTAACTTTTTACATGACCGAATATGAATGC GAACGTGCCATGTATAGTTTCCCGTCGCAGGAGCCTCCGTGCTGCCCAGCTCTGCTGTTG CCGAGCCGCCTGGCAGGGGTGCTTCTGGGTTCTGACCAGATGGTTGTGTGTGGGGAGCAG CTACTAAAAGTTTAGAACTTGCAGTGTCTTTCAGAATTTTTAAAATAAACTGTAAACTAA TAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 2-119, gnl|bosTau2|chr12 (20699986-20700103) | |
| 2-119, gnl|canFam2|chr25 (21056481-21056311) | |
| 2-119, gnl|danRer3|chrUn (117024029-117024207) | |
| 2-119, gnl|dasNov1|scaffold_149781 (1517-1684) | |
| 2-119, gnl|echTel1|scaffold_138274 (892-718) | |
| 2-119, gnl|fr1|chrUn (272275950-272275797) | |
| 2-119, gnl|galGal2|chr1 (171000100-170999941) | |
| 2-119, gnl|hg17|chr13 (19539364-19539539) | |
| 2-119, gnl|Hg17|chr13 (19539413-19539530) | |
| 2-119, gnl|loxAfr1|scaffold_15737 (58465-58640) | |
| 2-119, gnl|mm7|chr14 (51817881-51818054) | |
| 2-119, gnl|Mm7|chr14 (51817930-51818047) | |
| 2-119, gnl|monDom2|scaffold_15 (27675298-27675472) | |
| 2-119, gnl|oryCun1|scaffold_139783 (681-506) | |
| 2-119, gnl|panTro1|chr14 (18426389-18426564) | |
| 2-119, gnl|rheMac2|chr17 (1433500-1433325) | |
| 2-119, gnl|rn3|chr15 (35984012-35984185) | |
| 2-119, gnl|tetNig1|chr2 (17723522-17723378) | |
| 234-489, gnl|bosTau2|chr12 (20703084-20703339) | |
| 234-489, gnl|Hg17|chr13 (19554920-19555175) | |
| 234-489, gnl|Mm7|chr14 (51824570-51824825) | |
| 574-1261, gnl|bosTau2|chr12 (20704587-20705281) | |
| 574-1261, gnl|Hg17|chr13 (19557924-19558624) | |
| 574-1261, gnl|Mm7|chr14 (51827393-51828067) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-119, gnl|bosTau2|chr12 (20699986-20700103) | |
| 2-119, gnl|canFam2|chr25 (21056481-21056311) | |
| 2-119, gnl|danRer3|chrUn (117024029-117024207) | |
| 2-119, gnl|dasNov1|scaffold_149781 (1517-1684) | |
| 2-119, gnl|echTel1|scaffold_138274 (892-718) | |
| 2-119, gnl|fr1|chrUn (272275950-272275797) | |
| 2-119, gnl|galGal2|chr1 (171000100-170999941) | |
| 2-119, gnl|hg17|chr13 (19539364-19539539) | |
| 2-119, gnl|Hg17|chr13 (19539413-19539530) | |
| 2-119, gnl|loxAfr1|scaffold_15737 (58465-58640) | |
| 2-119, gnl|mm7|chr14 (51817881-51818054) | |
| 2-119, gnl|Mm7|chr14 (51817930-51818047) | |
| 2-119, gnl|monDom2|scaffold_15 (27675298-27675472) | |
| 2-119, gnl|oryCun1|scaffold_139783 (681-506) | |
| 2-119, gnl|panTro1|chr14 (18426389-18426564) | |
| 2-119, gnl|rheMac2|chr17 (1433500-1433325) | |
| 2-119, gnl|rn3|chr15 (35984012-35984185) | |
| 2-119, gnl|tetNig1|chr2 (17723522-17723378) | |
| 234-489, gnl|bosTau2|chr12 (20703084-20703339) | |
| 234-489, gnl|Hg17|chr13 (19554920-19555175) | |
| 234-489, gnl|Mm7|chr14 (51824570-51824825) | |
| 574-1261, gnl|bosTau2|chr12 (20704587-20705281) | |
| 574-1261, gnl|Hg17|chr13 (19557924-19558624) | |
| 574-1261, gnl|Mm7|chr14 (51827393-51828067) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| ill (0.351185) | |
| cte (0.29274) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| csp (0.161186) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| cte (0.29274) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| csp (0.161186) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) |