Non-Coding RNA Search

Ss1.1-Thy1-THY010090B11.5

Sequence:


               
               GCCATCTGTTTCAATCTTTTGGTCCTCATCATTTTTTCAACCAGGTTTTGGAAATGATGT
AGCAGAAATAACACTGCACCAGGAGTCAGGAAGCCTTGCTGCTAATGTTGGCTTCATATC
TAATCAACTCTGGTATTAGATAAGTCACTCATCTCCTCCTGACTCCCACTTTCTCATCTT
------------CTCTGGCACTCATTAGTCACACTGGCATTCAGGGAATGGCAGGCAGGT
GCAAAAGCTGGTGGGAAATGGAAGCTGAGAGGTTTGGGGAACTGAGGGTCGCGATGTCAG
AGAAAAAACAGCCGGTAGACTTGGGTCTGCTGGAGGAGGACGACGAGTTCGAGGAGTTTC
CTGCAGAAGACTGGGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATT
GGGATGATGACAATGTAGAGGATGACTTCTCCAATCAGTTAGGAGCTCTTTGGTTTGGTT
CAATTCATGCTGCTCCCAAAATGTGGCATGCTCTCTTCTCCAGATGTCACTAATCAATGC
CTCTGGTTCAAGCAAGTGTCATATCTCCAGGAAGGCTGAGAGTTCCTCTTAAGCTTCTTT
TGTGCTTTTCTCTAGCAGGTGATGATCTTTAGTATTTCTTCACCTAGAGGCATGATCCAC
TTTTGGTAGGGTTCACAAAGCTAGAGACCTCTGATATAATGTGAAGTTATATTCTTCAAG
AAAAAAAACAAGTCACCAAAGGTCTTTTTGTTCCTTTTGCCAATTACCAAGACAAAAAAT
AAAACAACTATTAGAGAATGGGCTTACTGGATTGTGGAAGGAGAAAAAGAAGAAACTTGT
TGGAGTTCAGCCTTTCTTCTGACTCTAGCTTCCTGGCTGTGATTCTTGATGAGATGCCAC
TGCATTTTCCATTGGCCTCTCACTGGCCAACGCCGCTGCCCCTCACGCGGCAGCCCCCTC
GGCAATTGGCCCCCGGCCGTCCCTCGTCATCTTCGTCCTCGTCTCGAGTCCCGCCTCCGT
CGCCGGGTCATTTAAGTTTATCACAAATAAATAAATAAAGGAGGAAATAGAAATGCGTAG
AAAGTAAAAGCAGGCGGGAGGGGGCAGGGGCGTGGAGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATCTGTTTCAATCTTTTGGTCCTCATCATTTTTTCAACCAGGTTTTGGAAATGATGT
AGCAGAAATAACACTGCACCAGGAGTCAGGAAGCCTTGCTGCTAATGTTGGCTTCATATC
TAATCAACTCTGGTATTAGATAAGTCACTCATCTCCTCCTGACTCCCACTTTCTCATCTT
------------CTCTGGCACTCATTAGTCACACTGGCATTCAGGGAATGGCAGGCAGGT
GCAAAAGCTGGTGGGAAATGGAAGCTGAGAGGTTTGGGGAACTGAGGGTCGCGATGTCAG
AGAAAAAACAGCCGGTAGACTTGGGTCTGCTGGAGGAGGACGACGAGTTCGAGGAGTTTC
CTGCAGAAGACTGGGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATT
GGGATGATGACAATGTAGAGGATGACTTCTCCAATCAGTTAGGAGCTCTTTGGTTTGGTT
CAATTCATGCTGCTCCCAAAATGTGGCATGCTCTCTTCTCCAGATGTCACTAATCAATGC
CTCTGGTTCAAGCAAGTGTCATATCTCCAGGAAGGCTGAGAGTTCCTCTTAAGCTTCTTT
TGTGCTTTTCTCTAGCAGGTGATGATCTTTAGTATTTCTTCACCTAGAGGCATGATCCAC
TTTTGGTAGGGTTCACAAAGCTAGAGACCTCTGATATAATGTGAAGTTATATTCTTCAAG
AAAAAAAACAAGTCACCAAAGGTCTTTTTGTTCCTTTTGCCAATTACCAAGACAAAAAAT
AAAACAACTATTAGAGAATGGGCTTACTGGATTGTGGAAGGAGAAAAAGAAGAAACTTGT
TGGAGTTCAGCCTTTCTTCTGACTCTAGCTTCCTGGCTGTGATTCTTGATGAGATGCCAC
TGCATTTTCCATTGGCCTCTCACTGGCCAACGCCGCTGCCCCTCACGCGGCAGCCCCCTC
GGCAATTGGCCCCCGGCCGTCCCTCGTCATCTTCGTCCTCGTCTCGAGTCCCGCCTCCGT
CGCCGGGTCATTTAAGTTTATCACAAATAAATAAATAAAGGAGGAAATAGAAATGCGTAG
AAAGTAAAAGCAGGCGGGAGGGGGCAGGGGCGTGGAGAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IBB7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IBB7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1009-1109, + strand, RNAz p=0.538162

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1009-1109, + strand, RNAz p=0.538162

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               253-455, gnl|bosTau2|chr22 (16579585-16579787)
               

               
               253-455, gnl|Hg17|chr5 (81224037-81224264)
               


               
               903-1109, gnl|bosTau2|chr1 (34974404-34974197)
               

               
               903-1109, gnl|galGal2|chr1 (76548851-76548398)
               

               
               903-1109, gnl|hg17|chr3 (116348948-116349562)
               

               
               903-1109, gnl|Hg17|chr3 (116349545-116349333)
               

               
               903-1109, gnl|loxAfr1|scaffold_33521 (4228-4882)
               

               
               903-1109, gnl|mm7|chr16 (42639886-42639304)
               

               
               903-1109, gnl|Mm7|chr16 (42639319-42639527)
               

               
               903-1109, gnl|monDom2|scaffold_24 (10143219-10143848)
               

               
               903-1109, gnl|oryCun1|scaffold_201628 (13062-12467)
               

               
               903-1109, gnl|panTro1|chr2 (118059148-118059761)
               

               
               903-1109, gnl|rheMac2|chr2 (35155961-35156576)
               

               
               903-1109, gnl|rn3|chr11 (59490179-59490761)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               253-455, gnl|bosTau2|chr22 (16579585-16579787)
               

               
               253-455, gnl|Hg17|chr5 (81224037-81224264)
               


               
               903-1109, gnl|bosTau2|chr1 (34974404-34974197)
               

               
               903-1109, gnl|galGal2|chr1 (76548851-76548398)
               

               
               903-1109, gnl|hg17|chr3 (116348948-116349562)
               

               
               903-1109, gnl|Hg17|chr3 (116349545-116349333)
               

               
               903-1109, gnl|loxAfr1|scaffold_33521 (4228-4882)
               

               
               903-1109, gnl|mm7|chr16 (42639886-42639304)
               

               
               903-1109, gnl|Mm7|chr16 (42639319-42639527)
               

               
               903-1109, gnl|monDom2|scaffold_24 (10143219-10143848)
               

               
               903-1109, gnl|oryCun1|scaffold_201628 (13062-12467)
               

               
               903-1109, gnl|panTro1|chr2 (118059148-118059761)
               

               
               903-1109, gnl|rheMac2|chr2 (35155961-35156576)
               

               
               903-1109, gnl|rn3|chr11 (59490179-59490761)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	253-455, gnl\|bosTau2\|chr22 (16579585-16579787)
	253-455, gnl\|Hg17\|chr5 (81224037-81224264)

	903-1109, gnl\|bosTau2\|chr1 (34974404-34974197)
	903-1109, gnl\|galGal2\|chr1 (76548851-76548398)
	903-1109, gnl\|hg17\|chr3 (116348948-116349562)
	903-1109, gnl\|Hg17\|chr3 (116349545-116349333)
	903-1109, gnl\|loxAfr1\|scaffold_33521 (4228-4882)
	903-1109, gnl\|mm7\|chr16 (42639886-42639304)
	903-1109, gnl\|Mm7\|chr16 (42639319-42639527)
	903-1109, gnl\|monDom2\|scaffold_24 (10143219-10143848)
	903-1109, gnl\|oryCun1\|scaffold_201628 (13062-12467)
	903-1109, gnl\|panTro1\|chr2 (118059148-118059761)
	903-1109, gnl\|rheMac2\|chr2 (35155961-35156576)
	903-1109, gnl\|rn3\|chr11 (59490179-59490761)