Ss1.1-Thy1-THY010090C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCTCAGTGAGTGGGAAGAACATCACCCCTAAAGAAGCTGCACAGAGGACTGGATGACA TGGCTGCCAGGCCTGTCCCATGGCTGGGCTCTCTCTTCCTGGTTTCCCTCTGGGGGGCCT CGGCTCCAGCTTCCCTCCTTAGGCGCCTCAGTGAGCACATTCAGTTGTTTCAGGAGAGCG CTGGCTTGGGCCCGAGCCTGAGCCTGGGCTCAGGTGCTGTGGCCCCCCCGAAAGAGGGGT GGCTGGAGCAGCCACTGGACCCCTTCAATGCATCTGACAGACAGTCTTTTCTGCAGCGGT ATTGGGTAAATGACCAATATTGGACCAGCCAGGATGGACCTGTATTCCTGCATCTAGGGG GCGAAGGCAGCCTTGGACCTGGCTCAGTAATGAGAGGGCACCCCGCAGCACTGGCCCCAG TCTGGGGAGCCCTGGTGATAGGCCTGGAACATAGATTTTATGGCCTGAGTATACCTGCTG AAGGGCTGGGCATGGCCAAGCTCCGCTTCCTGTCCAGTCGCCATGCGCTGGCCGATGTGG TCTCTGCCCGCCTTGCACTCACCCGCCTCTTCAACGTCTCCTCCTCCAGTCCCTGGATCT GCTTCGGAGGCTCCTATGCTGGCTCCCTGGCTGCCTGGGCCAGGCTGAAGTTTCCCCATC TCATTTTCGCCTCCGTCGCCTCTTCCGCTCCCGTGCGGGCTGTACTGGATTTCTCCGAGT ATAATGATGTGGTGTCCAAAAGCCTAATGAACACTGCGATTGGAGGATCCCCGGAGTGCC GCGCCGCTGTGTCCTCAGCCTTCGCGGAGGTGGAGCGGCGGCTGCGCGCGGGCGGGGCTG CTCTGGCAGCGCTGCAGGCGGAGCTGGGCGCCTGTGGGTCCCTGAGGCGCGCTGCGGACC GGGAGGAGCTGCTGGGGACGTTGCAGGCACTCGTGGGAGGCGCGGTGCAGTACGACGGGC AAGTGGGAGCGCCGCTGAGCGTGCGACAGCTCTGTGGACTCCTCCTCGGGGACCGGGACA ACAGCAGCAGCCCTGCGCCCTATCTTGGGCTTCATCGGGCAGTGCAGGTTGTCACACACA GCCTGGGCCAGAAGTGTTTAAGCTTTTCTCGAGCAGAGACAGTGGCACAGCTGAGGGTTA CAGAACCCCAAGTGTCCGGCTTGGGCGAACGGCAATGGTTGTACCAGACCTGTACCGAGT TTGGCTACTTTGTCACCTGTGAGGACCCTGGATGCCCTTTCTCCCAGCTTCCAGCACTGC CCTCCCACCTAGAGCTATGTGAGCAGGTGTTTGGGCTTTCAACCTCATCGATAGCCCAGG CTGTGGCCCGGACCAACTCCTACTATGGTGGCCAGACCCCAGGGGCCACACAAGTGCTTT TTGTTAATGGGGACATGGACCCCTGGCATGTGCTAAGCGTCACACAGGCCTTGGGACCCT CAGAGTCAGCCATTCTTATCCCCGGTGCCTCTCATTGCTTGGACATGGCACCTGAGAAGC CCTCAGACTCCCCCAGCCTCCGCCTGGCACGCCAGAACATCTTTCTGCAGCTACAGACCT GGCTCCAGCTGGCAAAGGAGAGCCAGGTTAAAGGTGAGGTCTGAGCCCCACACCCTCGCC GCTCCCTGTGGGGCCACCCCAGTCCTGGATGTATACGTTTATTGTACAAGAGAAAGCAGC TTGTTTTGAAAGAGGAAAATTCCAGGAATTCGGATTTAGCTTTTGTTCTGCAGAAAACTG ACTTGTGCCTGCAAACATCCTCATGCCTAACTATATCACTTTGTTACAAAGTTATATAAA AAATAAAATAAAATAAAATGGGGGTGTGGGGGGATGGCTGGGGTTGTGGGACGGAAATCC TGTGAAATTGGATTGTGATGATCATTATACAACTACAGATGTGATAAATTCATTGAGTAA TAAAAAATTTTTTTTTAAATAAAGATAAGATAAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCTCAGTGAGTGGGAAGAACATCACCCCTAAAGAAGCTGCACAGAGGACTGGATGACA TGGCTGCCAGGCCTGTCCCATGGCTGGGCTCTCTCTTCCTGGTTTCCCTCTGGGGGGCCT CGGCTCCAGCTTCCCTCCTTAGGCGCCTCAGTGAGCACATTCAGTTGTTTCAGGAGAGCG CTGGCTTGGGCCCGAGCCTGAGCCTGGGCTCAGGTGCTGTGGCCCCCCCGAAAGAGGGGT GGCTGGAGCAGCCACTGGACCCCTTCAATGCATCTGACAGACAGTCTTTTCTGCAGCGGT ATTGGGTAAATGACCAATATTGGACCAGCCAGGATGGACCTGTATTCCTGCATCTAGGGG GCGAAGGCAGCCTTGGACCTGGCTCAGTAATGAGAGGGCACCCCGCAGCACTGGCCCCAG TCTGGGGAGCCCTGGTGATAGGCCTGGAACATAGATTTTATGGCCTGAGTATACCTGCTG AAGGGCTGGGCATGGCCAAGCTCCGCTTCCTGTCCAGTCGCCATGCGCTGGCCGATGTGG TCTCTGCCCGCCTTGCACTCACCCGCCTCTTCAACGTCTCCTCCTCCAGTCCCTGGATCT GCTTCGGAGGCTCCTATGCTGGCTCCCTGGCTGCCTGGGCCAGGCTGAAGTTTCCCCATC TCATTTTCGCCTCCGTCGCCTCTTCCGCTCCCGTGCGGGCTGTACTGGATTTCTCCGAGT ATAATGATGTGGTGTCCAAAAGCCTAATGAACACTGCGATTGGAGGATCCCCGGAGTGCC GCGCCGCTGTGTCCTCAGCCTTCGCGGAGGTGGAGCGGCGGCTGCGCGCGGGCGGGGCTG CTCTGGCAGCGCTGCAGGCGGAGCTGGGCGCCTGTGGGTCCCTGAGGCGCGCTGCGGACC GGGAGGAGCTGCTGGGGACGTTGCAGGCACTCGTGGGAGGCGCGGTGCAGTACGACGGGC AAGTGGGAGCGCCGCTGAGCGTGCGACAGCTCTGTGGACTCCTCCTCGGGGACCGGGACA ACAGCAGCAGCCCTGCGCCCTATCTTGGGCTTCATCGGGCAGTGCAGGTTGTCACACACA GCCTGGGCCAGAAGTGTTTAAGCTTTTCTCGAGCAGAGACAGTGGCACAGCTGAGGGTTA CAGAACCCCAAGTGTCCGGCTTGGGCGAACGGCAATGGTTGTACCAGACCTGTACCGAGT TTGGCTACTTTGTCACCTGTGAGGACCCTGGATGCCCTTTCTCCCAGCTTCCAGCACTGC CCTCCCACCTAGAGCTATGTGAGCAGGTGTTTGGGCTTTCAACCTCATCGATAGCCCAGG CTGTGGCCCGGACCAACTCCTACTATGGTGGCCAGACCCCAGGGGCCACACAAGTGCTTT TTGTTAATGGGGACATGGACCCCTGGCATGTGCTAAGCGTCACACAGGCCTTGGGACCCT CAGAGTCAGCCATTCTTATCCCCGGTGCCTCTCATTGCTTGGACATGGCACCTGAGAAGC CCTCAGACTCCCCCAGCCTCCGCCTGGCACGCCAGAACATCTTTCTGCAGCTACAGACCT GGCTCCAGCTGGCAAAGGAGAGCCAGGTTAAAGGTGAGGTCTGAGCCCCACACCCTCGCC GCTCCCTGTGGGGCCACCCCAGTCCTGGATGTATACGTTTATTGTACAAGAGAAAGCAGC TTGTTTTGAAAGAGGAAAATTCCAGGAATTCGGATTTAGCTTTTGTTCTGCAGAAAACTG ACTTGTGCCTGCAAACATCCTCATGCCTAACTATATCACTTTGTTACAAAGTTATATAAA AAATAAAATAAAATAAAATGGGGGTGTGGGGGGATGGCTGGGGTTGTGGGACGGAAATCC TGTGAAATTGGATTGTGATGATCATTATACAACTACAGATGTGATAAATTCATTGAGTAA TAAAAAATTTTTTTTTAAATAAAGATAAGATAAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 127-285, - strand, RNAz p=0.999532 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 127-285, - strand, RNAz p=0.999532 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 127-296, gnl|bosTau2|chr6 (39804142-39804305) | |
| 127-296, gnl|Hg17|chr6 (27323637-27323806) | |
| 127-296, gnl|Mm7|chr13 (21375548-21375379) | |
| 395-527, gnl|bosTau2|chr6 (39805388-39805520) | |
| 395-527, gnl|Hg17|chr6 (27324856-27324988) | |
| 395-527, gnl|Mm7|chr13 (21374450-21374318) | |
| 768-1069, gnl|bosTau2|chr6 (39808071-39808384) | |
| 768-1069, gnl|canFam2|chr35 (27639832-27640227) | |
| 768-1069, gnl|echTel1|scaffold_241780 (1680-2014) | |
| 768-1069, gnl|hg17|chr6 (27327409-27327804) | |
| 768-1069, gnl|Hg17|chr6 (27327499-27327800) | |
| 768-1069, gnl|mm7|chr13 (21372364-21371967) | |
| 768-1069, gnl|Mm7|chr13 (21372270-21371969) | |
| 768-1069, gnl|monDom2|scaffold_149 (917861-917459) | |
| 768-1069, gnl|oryCun1|scaffold_133108 (13323-13670) | |
| 768-1069, gnl|panTro1|chr5 (27805569-27805964) | |
| 768-1069, gnl|rheMac2|chr4 (27015575-27015970) | |
| 768-1069, gnl|rn3|chr17 (50153542-50153905) | |
| 1212-1393, gnl|bosTau2|chr6 (39809696-39809877) | |
| 1212-1393, gnl|canFam2|chr35 (27642312-27642512) | |
| 1212-1393, gnl|echTel1|scaffold_241780 (5299-5500) | |
| 1212-1393, gnl|hg17|chr6 (27330449-27330649) | |
| 1212-1393, gnl|Hg17|chr6 (27330453-27330634) | |
| 1212-1393, gnl|mm7|chr13 (21369318-21369118) | |
| 1212-1393, gnl|Mm7|chr13 (21369312-21369131) | |
| 1212-1393, gnl|monDom2|scaffold_149 (916774-916563) | |
| 1212-1393, gnl|oryCun1|scaffold_133108 (15380-15580) | |
| 1212-1393, gnl|panTro1|chr5 (27808604-27808804) | |
| 1212-1393, gnl|rheMac2|chr4 (27018013-27018213) | |
| 1212-1393, gnl|rn3|chr17 (50156683-50156883) | |
| 1212-1393, gnl|tetNig1|chr16 (7683616-7683807) | |
| 1533-1806, gnl|bosTau2|chr6 (39810213-39810486) | |
| 1533-1806, gnl|Hg17|chr6 (27331002-27331281) | |
| 1533-1806, gnl|Mm7|chr13 (21368802-21368538) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 127-296, gnl|bosTau2|chr6 (39804142-39804305) | |
| 127-296, gnl|Hg17|chr6 (27323637-27323806) | |
| 127-296, gnl|Mm7|chr13 (21375548-21375379) | |
| 395-527, gnl|bosTau2|chr6 (39805388-39805520) | |
| 395-527, gnl|Hg17|chr6 (27324856-27324988) | |
| 395-527, gnl|Mm7|chr13 (21374450-21374318) | |
| 768-1069, gnl|bosTau2|chr6 (39808071-39808384) | |
| 768-1069, gnl|canFam2|chr35 (27639832-27640227) | |
| 768-1069, gnl|echTel1|scaffold_241780 (1680-2014) | |
| 768-1069, gnl|hg17|chr6 (27327409-27327804) | |
| 768-1069, gnl|Hg17|chr6 (27327499-27327800) | |
| 768-1069, gnl|mm7|chr13 (21372364-21371967) | |
| 768-1069, gnl|Mm7|chr13 (21372270-21371969) | |
| 768-1069, gnl|monDom2|scaffold_149 (917861-917459) | |
| 768-1069, gnl|oryCun1|scaffold_133108 (13323-13670) | |
| 768-1069, gnl|panTro1|chr5 (27805569-27805964) | |
| 768-1069, gnl|rheMac2|chr4 (27015575-27015970) | |
| 768-1069, gnl|rn3|chr17 (50153542-50153905) | |
| 1212-1393, gnl|bosTau2|chr6 (39809696-39809877) | |
| 1212-1393, gnl|canFam2|chr35 (27642312-27642512) | |
| 1212-1393, gnl|echTel1|scaffold_241780 (5299-5500) | |
| 1212-1393, gnl|hg17|chr6 (27330449-27330649) | |
| 1212-1393, gnl|Hg17|chr6 (27330453-27330634) | |
| 1212-1393, gnl|mm7|chr13 (21369318-21369118) | |
| 1212-1393, gnl|Mm7|chr13 (21369312-21369131) | |
| 1212-1393, gnl|monDom2|scaffold_149 (916774-916563) | |
| 1212-1393, gnl|oryCun1|scaffold_133108 (15380-15580) | |
| 1212-1393, gnl|panTro1|chr5 (27808604-27808804) | |
| 1212-1393, gnl|rheMac2|chr4 (27018013-27018213) | |
| 1212-1393, gnl|rn3|chr17 (50156683-50156883) | |
| 1212-1393, gnl|tetNig1|chr16 (7683616-7683807) | |
| 1533-1806, gnl|bosTau2|chr6 (39810213-39810486) | |
| 1533-1806, gnl|Hg17|chr6 (27331002-27331281) | |
| 1533-1806, gnl|Mm7|chr13 (21368802-21368538) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fty (2.46175) | |
| med (0.697512) | |
| spl (0.143184) | |
| pty (0.142714) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (2.46175) | |
| med (0.697512) | |
| spl (0.143184) | |
| pty (0.142714) |