Non-Coding RNA Search

Ss1.1-Thy1-THY010090D05.5

Sequence:


               
               TATCTATGTTTACATGGTGCTATTAATTACGAGTTAGGCTATTTTTGTAGATGTTCAAAT
TGCAAACAAACAAAGAAGTCCATCTTTCCCTGTCAAGCCTTGACCTGGGTTGGGTAAAGC
CCCTGATCCTTTCAGCTTGAAGGCTGCAGTTCCTGGAAGTCACTGCCAAACTAGAGCCAT
GCTACCTCTGGGCCTGACAGGTTGAAATGGCCCCCATCAGCCTGGAGCAGCCATCCGGTC
CTGGATGGAATTCCCAGAGTTGGGAGACTCTGCTAAGCCAAGATAACCAGGTGCTCTCGC
ACCCAGAGGCTGAAGTTGCTGGGGACCAGAATGGGTCTGCCTGCTGTTTGGACCTCCAGG
ATCTATGAAAAAGCCCAGGTGTGTCAGAAAACATCTGTATAATTCCCTTTCCTAGAAGCC
ACTCAGCCTGGAAACTGGTCCTGGCCCATTAAGACAGTCTTCATTTGAATTTGATTTGGT
CAGAAAGATTCTTAAGTATATGTAACATGTAATTACTCCTAGCTGAAATATTCTCTCCCC
TTCCTATTCTGCATGCCCAAGGCTTTGGAAGCAGCCAATGTGAATGTGACAACATTTTCG
AGTTTGATTAAAAGGGATTATGTAGTAGTTTTAAAATTTGTAGTTGTCCGCTTATAGTTT
ACTTTAAAAATAAGACCTGATGTGTCATTATGCATACTTATATTATTTTAAGCATGTGTA
ATACCGGATGTGTACAGTACAGTACTGAATATGTAATTTGAATCAAGTACGGTGTTCTGT
TTTCAGCTGACTTGGACAAACTGGCTGGCTCTGCAGAGGTGTTCTCTGGGTTGTTTGCAG
CCTTCTGCATGGGGTGTCAAGTGGGGAAGAACAGCCCTCACATGGCCCACCTCTCCTGGT
TGTCCAAGTTGTGCCCTGAAGCATCCTTATTCTTAGCACTGGACATTTCAGAGTGAATTA
CTAAAGGATACAATTTCTATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCTATGTTTACATGGTGCTATTAATTACGAGTTAGGCTATTTTTGTAGATGTTCAAAT
TGCAAACAAACAAAGAAGTCCATCTTTCCCTGTCAAGCCTTGACCTGGGTTGGGTAAAGC
CCCTGATCCTTTCAGCTTGAAGGCTGCAGTTCCTGGAAGTCACTGCCAAACTAGAGCCAT
GCTACCTCTGGGCCTGACAGGTTGAAATGGCCCCCATCAGCCTGGAGCAGCCATCCGGTC
CTGGATGGAATTCCCAGAGTTGGGAGACTCTGCTAAGCCAAGATAACCAGGTGCTCTCGC
ACCCAGAGGCTGAAGTTGCTGGGGACCAGAATGGGTCTGCCTGCTGTTTGGACCTCCAGG
ATCTATGAAAAAGCCCAGGTGTGTCAGAAAACATCTGTATAATTCCCTTTCCTAGAAGCC
ACTCAGCCTGGAAACTGGTCCTGGCCCATTAAGACAGTCTTCATTTGAATTTGATTTGGT
CAGAAAGATTCTTAAGTATATGTAACATGTAATTACTCCTAGCTGAAATATTCTCTCCCC
TTCCTATTCTGCATGCCCAAGGCTTTGGAAGCAGCCAATGTGAATGTGACAACATTTTCG
AGTTTGATTAAAAGGGATTATGTAGTAGTTTTAAAATTTGTAGTTGTCCGCTTATAGTTT
ACTTTAAAAATAAGACCTGATGTGTCATTATGCATACTTATATTATTTTAAGCATGTGTA
ATACCGGATGTGTACAGTACAGTACTGAATATGTAATTTGAATCAAGTACGGTGTTCTGT
TTTCAGCTGACTTGGACAAACTGGCTGGCTCTGCAGAGGTGTTCTCTGGGTTGTTTGCAG
CCTTCTGCATGGGGTGTCAAGTGGGGAAGAACAGCCCTCACATGGCCCACCTCTCCTGGT
TGTCCAAGTTGTGCCCTGAAGCATCCTTATTCTTAGCACTGGACATTTCAGAGTGAATTA
CTAAAGGATACAATTTCTATGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               195-351, - strand, RNAz p=0.953339

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-351, - strand, RNAz p=0.953339

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-984, gnl|bosTau2|chr2 (53914890-53913924)
               

               
               5-984, gnl|Hg17|chr2 (204650758-204651713)
               

               
               5-984, gnl|Mm7|chr1 (61249549-61250431)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-984, gnl|bosTau2|chr2 (53914890-53913924)
               

               
               5-984, gnl|Hg17|chr2 (204650758-204651713)
               

               
               5-984, gnl|Mm7|chr1 (61249549-61250431)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               thg (0.253582)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               lin (0.145603)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               lin (0.145603)
               

               
               cty (0.10408)

	5-984, gnl\|bosTau2\|chr2 (53914890-53913924)
	5-984, gnl\|Hg17\|chr2 (204650758-204651713)
	5-984, gnl\|Mm7\|chr1 (61249549-61250431)

	thg (0.253582)
	sto (0.179824)
	cje (0.165235)
	lin (0.145603)
	cty (0.10408)