Non-Coding RNA Search

Ss1.1-Thy1-THY010090G06.5

Sequence:


               
               CACTTACTGATTTGGGAAACTGACTTTCTGGGGACTGAGCCCCGATGGTGTGGGGAACAA
GCAGTGGGATGGGGCTGGGGAGGCCCAAGCCCCAAGCTGAGCACGATGAGCCCTATCAAC
CCAGCCAGCCGACTCCTCACCTTGGGCCAGTGTGGAAGAAATGAAGCCACAGGATGGAGG
GAAATTTCCCACCTTGGGGCCCTCTAGCCCACCTGACACTCTCTTCCTACCTCTCTGCCT
TCTCCCTCCCCAGGGCCGCTTGGTGAGTTCTGAGGACTTAAGGTAGCTTTCTAGGATGGG
GACCACCATCAGATTTTTCTATCTATTTTCAAGCCCCTTATGGCATGAAACATAGCCCCA
GGCATTTAGTCAGGATGAAGCTATACTTGGGAGCCCATGGAAGGGGCAAACAGCTTTGAC
CTGATAGCAGAGGGAGAGCGGCTGAGGGACAGAGGGTATCTTAAAAACTCTGGATATCTC
AGAGTTTTGCTGAAAATGTAACTCGACAGGAAACAACACAAGTAGGCTGAGATGGAGAAG
GCAGAATAACAGTGTTAAGTAGCCATTTGAACAGGCCCTCACCACAAAAGGGAGGGAGTT
TGGTCGGTTCAAATTCACAGGCCATCCCTAGAGAGAAGCTTAAGAACACTTTGGTCCTGC
CTTTTACCTGAGATATTGTCAGCTTCCAACAGGGTGCTGTAGTTGTCTGTTTTCTGGCTC
TGAGGGCCTCGCCTCCAATTTAAGTCAAGATATAGATTGAATTTCCATTCTGTTCCATTT
ATAATATGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTACTGATTTGGGAAACTGACTTTCTGGGGACTGAGCCCCGATGGTGTGGGGAACAA
GCAGTGGGATGGGGCTGGGGAGGCCCAAGCCCCAAGCTGAGCACGATGAGCCCTATCAAC
CCAGCCAGCCGACTCCTCACCTTGGGCCAGTGTGGAAGAAATGAAGCCACAGGATGGAGG
GAAATTTCCCACCTTGGGGCCCTCTAGCCCACCTGACACTCTCTTCCTACCTCTCTGCCT
TCTCCCTCCCCAGGGCCGCTTGGTGAGTTCTGAGGACTTAAGGTAGCTTTCTAGGATGGG
GACCACCATCAGATTTTTCTATCTATTTTCAAGCCCCTTATGGCATGAAACATAGCCCCA
GGCATTTAGTCAGGATGAAGCTATACTTGGGAGCCCATGGAAGGGGCAAACAGCTTTGAC
CTGATAGCAGAGGGAGAGCGGCTGAGGGACAGAGGGTATCTTAAAAACTCTGGATATCTC
AGAGTTTTGCTGAAAATGTAACTCGACAGGAAACAACACAAGTAGGCTGAGATGGAGAAG
GCAGAATAACAGTGTTAAGTAGCCATTTGAACAGGCCCTCACCACAAAAGGGAGGGAGTT
TGGTCGGTTCAAATTCACAGGCCATCCCTAGAGAGAAGCTTAAGAACACTTTGGTCCTGC
CTTTTACCTGAGATATTGTCAGCTTCCAACAGGGTGCTGTAGTTGTCTGTTTTCTGGCTC
TGAGGGCCTCGCCTCCAATTTAAGTCAAGATATAGATTGAATTTCCATTCTGTTCCATTT
ATAATATGAATG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               397-792, gnl|bosTau2|chr2 (79861418-79861824)
               

               
               397-792, gnl|Hg17|chr1 (25972005-25971217)
               

               
               397-792, gnl|Mm7|chr4 (133804813-133805171)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               397-792, gnl|bosTau2|chr2 (79861418-79861824)
               

               
               397-792, gnl|Hg17|chr1 (25972005-25971217)
               

               
               397-792, gnl|Mm7|chr4 (133804813-133805171)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               clu (0.837521)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.837521)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               cty (0.10408)

	397-792, gnl\|bosTau2\|chr2 (79861418-79861824)
	397-792, gnl\|Hg17\|chr1 (25972005-25971217)
	397-792, gnl\|Mm7\|chr4 (133804813-133805171)

	clu (0.837521)
	cut (0.169924)
	nco (0.161734)
	cst (0.140036)
	cty (0.10408)