Non-Coding RNA Search

Ss1.1-Thy1-THY010090H03.5

Sequence:


               
               AGCGGCGGTGGCGGTGAGGCTGCGGGCTGGGAGCCGGCGTTGGGCTCCTAGTAAGCTGGA
CGCCGCGCAGTGTTGAGCCCGCCGCCCTCCGGAGCCATGGAGATCGGCACCGAGATCAGC
CGCAAGATCCGAAGTGCCATTAAGGGGAAATTGCAAGAATTAGGAGCTTATGTTGATGAA
GAACTTCCTGATTACATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACA
GAGGACCTGTCCCTATTTCTAGGGAACAACACAATTCGATTCACCGTATGGCTTCATGGT
GTCTTAGATAAACTTCGTTCTGTAACAACTGACCCCTCTAGTTTCAAGTCTTCTGATACC
AACATCTTTGATAGTAATGTACCTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGAGA
AGGCATGAAGCTGCTGTTCCTCCTCTTGCAGTTTCTAGCACTAGACCTGAAAAAAGAGAC
TCTAGAGTTTCTACAAGTTCGCAGGAGCAGAAAGCCACTAATGTCAGACAGACTTATGAT
GATGGAGCTGCAACCCGACTAATGTCAACAGTGAAACCTTTGAGGGAACCAGCACCCTCT
GAAGATGTGATTGATATTAAGCCAGAACCGGATGATCTCATTGATGAAGACCTCAATTTT
GTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACGCTTACATATGGTTCTTCT
CGCCCATCTATTGAAATTTATCGACCACCTGCAAGTCGAAATGCAGACAGTGGTGCTCAT
TTAAACAGGTTGCAATTTCAACAGCAGCAAAACAGTATTCATGCTGCCAAGCAGGTCGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGCGGTGGCGGTGAGGCTGCGGGCTGGGAGCCGGCGTTGGGCTCCTAGTAAGCTGGA
CGCCGCGCAGTGTTGAGCCCGCCGCCCTCCGGAGCCATGGAGATCGGCACCGAGATCAGC
CGCAAGATCCGAAGTGCCATTAAGGGGAAATTGCAAGAATTAGGAGCTTATGTTGATGAA
GAACTTCCTGATTACATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACA
GAGGACCTGTCCCTATTTCTAGGGAACAACACAATTCGATTCACCGTATGGCTTCATGGT
GTCTTAGATAAACTTCGTTCTGTAACAACTGACCCCTCTAGTTTCAAGTCTTCTGATACC
AACATCTTTGATAGTAATGTACCTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGAGA
AGGCATGAAGCTGCTGTTCCTCCTCTTGCAGTTTCTAGCACTAGACCTGAAAAAAGAGAC
TCTAGAGTTTCTACAAGTTCGCAGGAGCAGAAAGCCACTAATGTCAGACAGACTTATGAT
GATGGAGCTGCAACCCGACTAATGTCAACAGTGAAACCTTTGAGGGAACCAGCACCCTCT
GAAGATGTGATTGATATTAAGCCAGAACCGGATGATCTCATTGATGAAGACCTCAATTTT
GTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACGCTTACATATGGTTCTTCT
CGCCCATCTATTGAAATTTATCGACCACCTGCAAGTCGAAATGCAGACAGTGGTGCTCAT
TTAAACAGGTTGCAATTTCAACAGCAGCAAAACAGTATTCATGCTGCCAAGCAGGTCGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47224282|emb|CAG09128.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47224282|emb|CAG09128.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               704-840, - strand, RNAz p=0.816311

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               704-840, - strand, RNAz p=0.816311

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               175-840, gnl|bosTau2|chr10 (8521010-8521673)
               

               
               175-840, gnl|Hg17|chr14 (88104135-88108987)
               

               
               175-840, gnl|Mm7|chr12 (30549796-30550345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-840, gnl|bosTau2|chr10 (8521010-8521673)
               

               
               175-840, gnl|Hg17|chr14 (88104135-88108987)
               

               
               175-840, gnl|Mm7|chr12 (30549796-30550345)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)

	175-840, gnl\|bosTau2\|chr10 (8521010-8521673)
	175-840, gnl\|Hg17\|chr14 (88104135-88108987)
	175-840, gnl\|Mm7\|chr12 (30549796-30550345)