Non-Coding RNA Search

Ss1.1-Thy1-THY010091A11.5

Sequence:


               
               AGCCCCGGCTGGGCGCTGCCAAGGCTGGTCGCTGATTGTGAATCCATGTGGCGGGTACTA
TGGACCCTGGTAGCCCGGGCGGCACGTGGGCCTCTCAGTTCCAGGCCGTGCCCGCGCCAG
AGCAGTGGCGCCCCGGCCCTGGGTCCCGGGTCCACTATCTTCGCACTGAGCTCTGGCCAA
GGCCGCTGCGGCATCGCTGTCATTAGAACCAGCGGCCCAGCCAGCGGGCACGCCCTCCGG
AGCCTTACGGCGCCCCGGGACTTACCCCCGGCCCGCAAAGCCTGCCTGCGCCTCCTCAGC
GACCCCTGCTCTGGGGAGCCTTTGGACCGCGCGCTGGTGCTTTGGTTTCCAGGTCCCCAG
AGTTTCACCGGTGAGGATTGCGCGGAGTTCCATGTGCATGGAGGCCCAGCTGTGGTGAGT
GGTGTCCTGCAGGCCCTGGGCAGTGTGCCAGGGCTGCGGCCAGCAGAGGCAGGCGAGTTC
ACCAGGAGGGCATTCGCCCATGGGAAGCTGAGCCTGACTGAGGTAGAGGGGCTGGCAGAT
CTGATCCATGCAGAAACTGAGGCGCAGCGGCGGCAGGCCTTGAGGCAGCTGGACGGGGAG
CTGGGCCACCTCTGCCAAGGCTGGGCAGAGACCCTCACTAGGGCTCTGGCCCATGTGGAG
GCCTATATTGATTTTGGTGAGGATGACAACCTAGAGGAGGGCGTCCTGGATCAAGCTGAC
AGCGAAGTGCGGGAGCTAGAGGTGGCATTGGGCACACACCTTCGAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCCGGCTGGGCGCTGCCAAGGCTGGTCGCTGATTGTGAATCCATGTGGCGGGTACTA
TGGACCCTGGTAGCCCGGGCGGCACGTGGGCCTCTCAGTTCCAGGCCGTGCCCGCGCCAG
AGCAGTGGCGCCCCGGCCCTGGGTCCCGGGTCCACTATCTTCGCACTGAGCTCTGGCCAA
GGCCGCTGCGGCATCGCTGTCATTAGAACCAGCGGCCCAGCCAGCGGGCACGCCCTCCGG
AGCCTTACGGCGCCCCGGGACTTACCCCCGGCCCGCAAAGCCTGCCTGCGCCTCCTCAGC
GACCCCTGCTCTGGGGAGCCTTTGGACCGCGCGCTGGTGCTTTGGTTTCCAGGTCCCCAG
AGTTTCACCGGTGAGGATTGCGCGGAGTTCCATGTGCATGGAGGCCCAGCTGTGGTGAGT
GGTGTCCTGCAGGCCCTGGGCAGTGTGCCAGGGCTGCGGCCAGCAGAGGCAGGCGAGTTC
ACCAGGAGGGCATTCGCCCATGGGAAGCTGAGCCTGACTGAGGTAGAGGGGCTGGCAGAT
CTGATCCATGCAGAAACTGAGGCGCAGCGGCGGCAGGCCTTGAGGCAGCTGGACGGGGAG
CTGGGCCACCTCTGCCAAGGCTGGGCAGAGACCCTCACTAGGGCTCTGGCCCATGTGGAG
GCCTATATTGATTTTGGTGAGGATGACAACCTAGAGGAGGGCGTCCTGGATCAAGCTGAC
AGCGAAGTGCGGGAGCTAGAGGTGGCATTGGGCACACACCTTCGAGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62024520|gb|AAH92042.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62024520|gb|AAH92042.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-367, gnl|bosTau2|chr7 (2762815-2762539)
               

               
               91-367, gnl|Hg17|chr19 (17309802-17310077)
               

               
               91-367, gnl|Mm7|chr8 (69956140-69956414)
               


               
               439-640, gnl|bosTau2|chr7 (2762267-2762066)
               

               
               439-640, gnl|Hg17|chr19 (17310347-17310548)
               

               
               439-640, gnl|Mm7|chr8 (69957419-69957620)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-367, gnl|bosTau2|chr7 (2762815-2762539)
               

               
               91-367, gnl|Hg17|chr19 (17309802-17310077)
               

               
               91-367, gnl|Mm7|chr8 (69956140-69956414)
               


               
               439-640, gnl|bosTau2|chr7 (2762267-2762066)
               

               
               439-640, gnl|Hg17|chr19 (17310347-17310548)
               

               
               439-640, gnl|Mm7|chr8 (69957419-69957620)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	91-367, gnl\|bosTau2\|chr7 (2762815-2762539)
	91-367, gnl\|Hg17\|chr19 (17309802-17310077)
	91-367, gnl\|Mm7\|chr8 (69956140-69956414)

	439-640, gnl\|bosTau2\|chr7 (2762267-2762066)
	439-640, gnl\|Hg17\|chr19 (17310347-17310548)
	439-640, gnl\|Mm7\|chr8 (69957419-69957620)