Ss1.1-Thy1-THY010091D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTGTACTTCCGGGATTCGGTAGCCGAGGACCGCGGCCGCTTCGGGCGGGGGCTTCTGC CGCCAGGATCATGCTACTGCGAACCGCTTCGAGGCGGGTGGCCGCAGCCGTGCTCGCCGC TGCCAGGCCGAGGGCCAAGTCGCCCACTCGGGGGCTGCGCCTGCGCGTTGTAGACCATGC TCCCCAGTCTGCTGTTCCCTCGGATGCAGTCACTGCTCCGGAGGCAGAGCCAGTGCTGCG GCCTCTGTATATGGATGTGCAAGCTACAACTCCTCTGGACCCTCGGGTGCTTGATGCCAT GCTTCCTTACCTAGTCAACTACTATGGGAACCCACACTCCCGGACACATGCGTATGGCTG GGAAAGTGAGGCAGCCATGGAACATGCTCGCCAGCAAGTAGCATCTCTGATTGGGGCCGA TCCTCGTGAGATCATCTTCACTAGCGGTGCTACTGAATCCAACAACATAGCAATTAAGGG GGTGGCCAGGTTCTATAGGTCACGGAAAAAGCACTTGATCACCACGCAGACAGAACACAA ATGTGTTTTAGACTCCTGCCGTTCACTGGAAGCTGAGGGCTTTCAGGTCACCTACCTCCC AGTGAAGAAGAGTGGGATCATCGACCTGAAGGAACTAGAGGCTGCCATCCGGCCAGATAC CAGCCTGGTCTCGGTCATGACTGTGAACAATGAGATTGGAGTGAAGCAGCCCATCGCAGA AATAGGGCGGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTGTACTTCCGGGATTCGGTAGCCGAGGACCGCGGCCGCTTCGGGCGGGGGCTTCTGC CGCCAGGATCATGCTACTGCGAACCGCTTCGAGGCGGGTGGCCGCAGCCGTGCTCGCCGC TGCCAGGCCGAGGGCCAAGTCGCCCACTCGGGGGCTGCGCCTGCGCGTTGTAGACCATGC TCCCCAGTCTGCTGTTCCCTCGGATGCAGTCACTGCTCCGGAGGCAGAGCCAGTGCTGCG GCCTCTGTATATGGATGTGCAAGCTACAACTCCTCTGGACCCTCGGGTGCTTGATGCCAT GCTTCCTTACCTAGTCAACTACTATGGGAACCCACACTCCCGGACACATGCGTATGGCTG GGAAAGTGAGGCAGCCATGGAACATGCTCGCCAGCAAGTAGCATCTCTGATTGGGGCCGA TCCTCGTGAGATCATCTTCACTAGCGGTGCTACTGAATCCAACAACATAGCAATTAAGGG GGTGGCCAGGTTCTATAGGTCACGGAAAAAGCACTTGATCACCACGCAGACAGAACACAA ATGTGTTTTAGACTCCTGCCGTTCACTGGAAGCTGAGGGCTTTCAGGTCACCTACCTCCC AGTGAAGAAGAGTGGGATCATCGACCTGAAGGAACTAGAGGCTGCCATCCGGCCAGATAC CAGCCTGGTCTCGGTCATGACTGTGAACAATGAGATTGGAGTGAAGCAGCCCATCGCAGA AATAGGGCGGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 515-632, - strand, RNAz p=0.556754 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 515-632, - strand, RNAz p=0.556754 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 277-394, gnl|bosTau2|chr13 (46388905-46389022) | |
| 277-394, gnl|Hg17|chr20 (33749137-33749020) | |
| 277-394, gnl|Mm7|chr2 (155883101-155882984) | |
| 477-632, gnl|bosTau2|chr13 (46393582-46393737) | |
| 477-632, gnl|canFam2|chr24 (27577878-27578044) | |
| 477-632, gnl|danRer3|chr11 (24485689-24485529) | |
| 477-632, gnl|dasNov1|scaffold_164302 (627-461) | |
| 477-632, gnl|echTel1|scaffold_314238 (76588-76754) | |
| 477-632, gnl|fr1|chrUn (254494208-254494373) | |
| 477-632, gnl|galGal2|chr20 (943825-943661) | |
| 477-632, gnl|hg17|chr20 (33741738-33741904) | |
| 477-632, gnl|Hg17|chr20 (33741903-33741748) | |
| 477-632, gnl|loxAfr1|scaffold_16525 (35980-35814) | |
| 477-632, gnl|mm7|chr2 (155875253-155875419) | |
| 477-632, gnl|Mm7|chr2 (155875418-155875263) | |
| 477-632, gnl|monDom2|scaffold_6 (11303925-11303759) | |
| 477-632, gnl|oryCun1|scaffold_178874 (11077-10911) | |
| 477-632, gnl|panTro1|chr21 (35764116-35764282) | |
| 477-632, gnl|rheMac2|chr10 (28847879-28847713) | |
| 477-632, gnl|rn3|chr3 (146445141-146445307) | |
| 477-632, gnl|tetNig1|chrUn_random (12081333-12081498) | |
| 477-632, gnl|xenTro1|scaffold_35 (2936057-2936216) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 277-394, gnl|bosTau2|chr13 (46388905-46389022) | |
| 277-394, gnl|Hg17|chr20 (33749137-33749020) | |
| 277-394, gnl|Mm7|chr2 (155883101-155882984) | |
| 477-632, gnl|bosTau2|chr13 (46393582-46393737) | |
| 477-632, gnl|canFam2|chr24 (27577878-27578044) | |
| 477-632, gnl|danRer3|chr11 (24485689-24485529) | |
| 477-632, gnl|dasNov1|scaffold_164302 (627-461) | |
| 477-632, gnl|echTel1|scaffold_314238 (76588-76754) | |
| 477-632, gnl|fr1|chrUn (254494208-254494373) | |
| 477-632, gnl|galGal2|chr20 (943825-943661) | |
| 477-632, gnl|hg17|chr20 (33741738-33741904) | |
| 477-632, gnl|Hg17|chr20 (33741903-33741748) | |
| 477-632, gnl|loxAfr1|scaffold_16525 (35980-35814) | |
| 477-632, gnl|mm7|chr2 (155875253-155875419) | |
| 477-632, gnl|Mm7|chr2 (155875418-155875263) | |
| 477-632, gnl|monDom2|scaffold_6 (11303925-11303759) | |
| 477-632, gnl|oryCun1|scaffold_178874 (11077-10911) | |
| 477-632, gnl|panTro1|chr21 (35764116-35764282) | |
| 477-632, gnl|rheMac2|chr10 (28847879-28847713) | |
| 477-632, gnl|rn3|chr3 (146445141-146445307) | |
| 477-632, gnl|tetNig1|chrUn_random (12081333-12081498) | |
| 477-632, gnl|xenTro1|scaffold_35 (2936057-2936216) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |