Ss1.1-Thy1-THY010091H04.5
|
CCGCGCGCCTCTTTGGCAGCTGGTCACATGGTGAGGGTGGGGGCAAAGGGGGCCGCTCTA
GCCTGCGGCCTATGTCTATGGTCGGGCCCGTAGAGTCCAGCTGCCCCAGACAGAGCTCGA
GTGCATGGCGCTGCAAGAACCGGCTCCGGGGCCCCGATAACGGGCCGCCCCCGCAGCTCC
TGACACGGGGCGAGGGTCTCATCTGGTCTGAGAATGGCTACCTCCCGGTATGAACCAGTG
GCGGAGATTGGTGTTGGTGCCTATGGGACCGTGTACAAAGCACGGGATCCCCACAGTGGC
CACTTTGTGGCCCTCAAGAGCGTAAGAGTCCCCAATGGAGGAGGTGCTGGAGGGGGCCTG
CCCATCAGCACGGTTCGTGAAGTGGCCTTACTGCGCCGGCTGGAGGCTTTCGAGCATCCC
AATGTTGTCCGGCTGATGGATGTCTGTGCCACTGCCCGAACTGATCGAGAGACCAAAGTG
ACCCTGGTGTTTGAGCATGTGGACCAAGATCTAAGGACATATCTGGACAAGGCACCCCCA
CCAGGCTTGCCGGTGGAGACCATCAAGGATCTGATGCGTCAGTTTCTAAGAGGCCTAGAT
TTCCTTCATGCCAACTGCATCGTTCATCGAGACCTGAAGCCAGAGAACATTCTGGTTACA
AGTGGTGGGACAGTCAAGCTGGCTGACTTTGGCCTGGCCAGAATCTACAGCTACCAGATG
GCACTTACACCTGTGGTGGTTACACTCTGGTACCGTGCTCCAGAAGTTCTTTTGCAGTCT
ACGTATGCAACACCTGTGGACATGTGGAGCGTTGGCTGTATCTTCGCAGAGATGTTTCGT
CGAAAGCCTCTCTTCTGTGGAAACTCTGAAGCTGACCAGTTAGGCAAAATCTTTGACCTG
ATTGGGCTGCCCCCAGAGGATGACTGGCCCCGAGATGTGTCTCTACCCCGAGGAGCCTTT
TCCCCCAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGAGATGGAGGAGTCTGGAGCA
CAGCTGCTACTGGAGATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTCCGAGCC
CTGCAGCACTCTTATCTACATAAGGCAGAAGGTAACCCAGAGTGAGCAATGGAATGGTTG
CAACAGAACCAAGAGAAGAGAAGCCAACACTTCCCTTCCTTTGAACACTTGAGAGTCCCT
TGCCGAGAAGTCGATCTCTGCCTTCATCTCTGGGGTGTGGAGACGACTGCCTCTGTCTTT
TTACAGAGAATATTTTGCTGCCTTAATGACATTCCCCTCCCTCCCCTCCTTTTGAGACTT
ACCCCCCCCCATTTCCTTACACCAAGGGGTATGTTCCTTGCTCTCCCCTTCCCTGTACCT
TGATACTAGAATCCTTTTTTATACAGGAGAAACAAAACAAAGAAATACGGTCTTTTTTCT
GGGAATGTTTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGCGCGCCTCTTTGGCAGCTGGTCACATGGTGAGGGTGGGGGCAAAGGGGGCCGCTCTA
GCCTGCGGCCTATGTCTATGGTCGGGCCCGTAGAGTCCAGCTGCCCCAGACAGAGCTCGA
GTGCATGGCGCTGCAAGAACCGGCTCCGGGGCCCCGATAACGGGCCGCCCCCGCAGCTCC
TGACACGGGGCGAGGGTCTCATCTGGTCTGAGAATGGCTACCTCCCGGTATGAACCAGTG
GCGGAGATTGGTGTTGGTGCCTATGGGACCGTGTACAAAGCACGGGATCCCCACAGTGGC
CACTTTGTGGCCCTCAAGAGCGTAAGAGTCCCCAATGGAGGAGGTGCTGGAGGGGGCCTG
CCCATCAGCACGGTTCGTGAAGTGGCCTTACTGCGCCGGCTGGAGGCTTTCGAGCATCCC
AATGTTGTCCGGCTGATGGATGTCTGTGCCACTGCCCGAACTGATCGAGAGACCAAAGTG
ACCCTGGTGTTTGAGCATGTGGACCAAGATCTAAGGACATATCTGGACAAGGCACCCCCA
CCAGGCTTGCCGGTGGAGACCATCAAGGATCTGATGCGTCAGTTTCTAAGAGGCCTAGAT
TTCCTTCATGCCAACTGCATCGTTCATCGAGACCTGAAGCCAGAGAACATTCTGGTTACA
AGTGGTGGGACAGTCAAGCTGGCTGACTTTGGCCTGGCCAGAATCTACAGCTACCAGATG
GCACTTACACCTGTGGTGGTTACACTCTGGTACCGTGCTCCAGAAGTTCTTTTGCAGTCT
ACGTATGCAACACCTGTGGACATGTGGAGCGTTGGCTGTATCTTCGCAGAGATGTTTCGT
CGAAAGCCTCTCTTCTGTGGAAACTCTGAAGCTGACCAGTTAGGCAAAATCTTTGACCTG
ATTGGGCTGCCCCCAGAGGATGACTGGCCCCGAGATGTGTCTCTACCCCGAGGAGCCTTT
TCCCCCAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGAGATGGAGGAGTCTGGAGCA
CAGCTGCTACTGGAGATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTCCGAGCC
CTGCAGCACTCTTATCTACATAAGGCAGAAGGTAACCCAGAGTGAGCAATGGAATGGTTG
CAACAGAACCAAGAGAAGAGAAGCCAACACTTCCCTTCCTTTGAACACTTGAGAGTCCCT
TGCCGAGAAGTCGATCTCTGCCTTCATCTCTGGGGTGTGGAGACGACTGCCTCTGTCTTT
TTACAGAGAATATTTTGCTGCCTTAATGACATTCCCCTCCCTCCCCTCCTTTTGAGACTT
ACCCCCCCCCATTTCCTTACACCAAGGGGTATGTTCCTTGCTCTCCCCTTCCCTGTACCT
TGATACTAGAATCCTTTTTTATACAGGAGAAACAAAACAAAGAAATACGGTCTTTTTTCT
GGGAATGTTTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
15-832, gnl|bosTau2|chr16 (48457508-48458324) |
|
15-832, gnl|Hg17|chr12 (56432404-56430719) |
|
15-832, gnl|Mm7|chr10 (126561059-126562729) |
| |
|
1032-1438, gnl|bosTau2|chr5 (34325443-34325031) |
|
1032-1438, gnl|canFam2|chr10 (4795740-4796170) |
|
1032-1438, gnl|dasNov1|scaffold_913 (170473-170032) |
|
1032-1438, gnl|echTel1|scaffold_319337 (68694-69158) |
|
1032-1438, gnl|hg17|chr12 (56428148-56428560) |
|
1032-1438, gnl|Hg17|chr12 (56428668-56428280) |
|
1032-1438, gnl|mm7|chr10 (126564901-126564513) |
|
1032-1438, gnl|Mm7|chr10 (126564406-126564777) |
|
1032-1438, gnl|oryCun1|scaffold_199432 (98932-98520) |
|
1032-1438, gnl|panTro1|chr10 (57672677-57673089) |
|
1032-1438, gnl|rheMac2|chr11 (54836979-54837395) |
|
1032-1438, gnl|rn3|chr7 (67040014-67039649) |
| |
|
1145-1425, gnl|bosTau2|chr21 (2902616-2902904) |
|
1145-1425, gnl|Hg17|chr12 (56428552-56428294) |
|
1145-1425, gnl|Mm7|chr10 (126564498-126564757) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
15-832, gnl|bosTau2|chr16 (48457508-48458324) |
|
15-832, gnl|Hg17|chr12 (56432404-56430719) |
|
15-832, gnl|Mm7|chr10 (126561059-126562729) |
| |
|
1032-1438, gnl|bosTau2|chr5 (34325443-34325031) |
|
1032-1438, gnl|canFam2|chr10 (4795740-4796170) |
|
1032-1438, gnl|dasNov1|scaffold_913 (170473-170032) |
|
1032-1438, gnl|echTel1|scaffold_319337 (68694-69158) |
|
1032-1438, gnl|hg17|chr12 (56428148-56428560) |
|
1032-1438, gnl|Hg17|chr12 (56428668-56428280) |
|
1032-1438, gnl|mm7|chr10 (126564901-126564513) |
|
1032-1438, gnl|Mm7|chr10 (126564406-126564777) |
|
1032-1438, gnl|oryCun1|scaffold_199432 (98932-98520) |
|
1032-1438, gnl|panTro1|chr10 (57672677-57673089) |
|
1032-1438, gnl|rheMac2|chr11 (54836979-54837395) |
|
1032-1438, gnl|rn3|chr7 (67040014-67039649) |
| |
|
1145-1425, gnl|bosTau2|chr21 (2902616-2902904) |
|
1145-1425, gnl|Hg17|chr12 (56428552-56428294) |
|
1145-1425, gnl|Mm7|chr10 (126564498-126564757) |
|
pro (0.512033) |
|
ece (0.45861) |
|
cty (0.41632) |
|
ill (0.351185) |
|
fbs (0.350693) |
|
csp (0.322373) |
|
fce (0.271592) |
|
cov (0.264306) |
|
ese (0.253004) |
|
eep (0.245128) |
|
eru (0.240096) |
|
ebs (0.236602) |
|
jej (0.197844) |
|
eje (0.197668) |
|
col (0.195008) |
|
nlu (0.191681) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cly (0.120642) |
|
med (0.116252) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
pro (0.512033) |
|
ece (0.45861) |
|
cty (0.41632) |
|
ill (0.351185) |
|
fbs (0.350693) |
|
csp (0.322373) |
|
fce (0.271592) |
|
cov (0.264306) |
|
ese (0.253004) |
|
eep (0.245128) |
|
eru (0.240096) |
|
ebs (0.236602) |
|
jej (0.197844) |
|
eje (0.197668) |
|
col (0.195008) |
|
nlu (0.191681) |
|
eye (0.170503) |
|
nje (0.16592) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cly (0.120642) |
|
med (0.116252) |
|
jca (0.11396) |
|
nbm (0.0993246) |
