Non-Coding RNA Search

Ss1.1-Thy1-THY010092E06.5

Sequence:


               
               TTATTTCAGTTTTCTGGTTTTGTCTGCCCCCCAATATTATTAGAATGTATGAATTTATGC
AGGAATTTAAGGAAAGAATGCTCCTCATAGAGATTTGAATTATGCTCTTAAACGGCTCCT
TTGTTTTCAAAGTGCTGGTTGCCTATTTTGGAGCTGTAAGGAAAAGATGAGATTCCCTTA
ATTACTGGCCACCCATATTAAATAGCAGATGCCATGACAGGGCTCCCCAGTGACTGAACG
CATACTGAGTCCAGAGGGGACAGAAAACCCACTGGGCTTCATAAGTAGTACATCAGACGT
GGCGGAGACACTTTTATGACAGCCATGCATTACAACTGCTTCTAAACTGGGGACCAACAT
TTTATCACTTCCTCTGGGATGAACCCATGCTCACGTCATTCACTGAGTGAATGGTGTGCA
GAGACGATGGTGGGAGATGAACAGGGATGTGGAGCCCTTTCCTGTAATAATACAGAATGA
TTAAGACGACCTTAAAAAAAATCAATTGACTAATCAATAGTGTATAACTGCTTGGAGCAT
TTTTCCCATGTTAATCACTCATTAAGTTGTCTAAACTAAATACCTCCAGCTTCCCCCATT
ACTGAACTGATTGACAACACAAGGTTATTTAGGATGTCAGGCTCCTGCAACCAGATTCCA
GAACATTTTTCAGTAAAAATAAAACAGAAATAATTCAGAGATGGCCCTTTCTCACCCCAG
ATTCAGCAGGCTCTGGAAAGGAAGGTTATAGGAGGAAGTGTTCTCCTAGTTTCCAGACAT
TGGTTCATGTGGTAACCCCAGGTTTTCAACATGTCTATTTGTTTGAGCCTATGGGTGGGG
ACTTGATTAAATTCATGGTGATAGGGGTCAAAATAACTGTAGAAAATGTCTATACACTAT
AGACACCTGTATATTTTCAGGCCTTTAAAGTTTTGTTTTAACTTCAGCCATAGTGAACAG
CATGCAGCAAACAAGACTCTGAATTCCAAACCACCAAAGGTATTCTAACAACACCTGTGA
AATGACACATTATGACCCACCCACACAGTGCCAGCAATTGTAGTATCAAAACCACTCATA
ACCTTTTTTTAAAAGTTGAATGCCACTGTGGGGGGAAAAAAACAACAACACGAAAACATA
ACTATAAACAGGGGAAAAACTTTTTTATTGATATGTTTTACTTTGCTGGCAGCCCAGAGC
AAAGGTTTTGTGACCATTTAAAAGATGAAAAAGGTGAAGAATCCCAGAAGCGGTTTATCT
TGAAGCGAGATAACTCTAGTATTGATAAAGAAGACCCTCAGGTTGGTTCTCAAGTTTGAG
AGTGGCTGACATTGTTGTTCTGGAAGGTGGGCTGACTGATGTTCTTGTCTCTCTTCTGTT
GTCCCCGCTCCCTTTCCCAAATCTCGCCTGCCTCTGATACTGCCGTCCGCACCCCCACCT
CATGCCTCTCCCCACTGCCTCCCCCTTCAGCATTCACTGCAAAGCAGAAAACCATGTCCG
GTTGCTTCAGCAATGGCTCTGTGTTGGGCTGCATGGGTGGTGCTTGGCGCAGTGTCTGCT
GCATGTCGTGGGGGGTTGGGGTGCTGTAGGCTCCAAGCTGACGGGAAGAGCTTTGTCAGT
CGCCTTTCCAGATGTCTGTGTAACTCTGGCAGTCGTTCCACTCCCTACAGCTTTATCCTT
CCGTTGTGCACACATTGAACTGGATTATCAATACGGACCGATGAGCAACTGATGTAGCTG
TAAACAACAAACCTTGTTCTGGTGAGGACAGGTGGATTTTGCAACTCTCCTAAAATAAGT
CTTCACAAAAAAAGAATTGAGTTCATGTTTTAGTCCCCTCAACCCCTTTTCCTTCCCACG
TTTTCTGGTCCACGTCAGTCATCTTGCTTGTTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTCAGTTTTCTGGTTTTGTCTGCCCCCCAATATTATTAGAATGTATGAATTTATGC
AGGAATTTAAGGAAAGAATGCTCCTCATAGAGATTTGAATTATGCTCTTAAACGGCTCCT
TTGTTTTCAAAGTGCTGGTTGCCTATTTTGGAGCTGTAAGGAAAAGATGAGATTCCCTTA
ATTACTGGCCACCCATATTAAATAGCAGATGCCATGACAGGGCTCCCCAGTGACTGAACG
CATACTGAGTCCAGAGGGGACAGAAAACCCACTGGGCTTCATAAGTAGTACATCAGACGT
GGCGGAGACACTTTTATGACAGCCATGCATTACAACTGCTTCTAAACTGGGGACCAACAT
TTTATCACTTCCTCTGGGATGAACCCATGCTCACGTCATTCACTGAGTGAATGGTGTGCA
GAGACGATGGTGGGAGATGAACAGGGATGTGGAGCCCTTTCCTGTAATAATACAGAATGA
TTAAGACGACCTTAAAAAAAATCAATTGACTAATCAATAGTGTATAACTGCTTGGAGCAT
TTTTCCCATGTTAATCACTCATTAAGTTGTCTAAACTAAATACCTCCAGCTTCCCCCATT
ACTGAACTGATTGACAACACAAGGTTATTTAGGATGTCAGGCTCCTGCAACCAGATTCCA
GAACATTTTTCAGTAAAAATAAAACAGAAATAATTCAGAGATGGCCCTTTCTCACCCCAG
ATTCAGCAGGCTCTGGAAAGGAAGGTTATAGGAGGAAGTGTTCTCCTAGTTTCCAGACAT
TGGTTCATGTGGTAACCCCAGGTTTTCAACATGTCTATTTGTTTGAGCCTATGGGTGGGG
ACTTGATTAAATTCATGGTGATAGGGGTCAAAATAACTGTAGAAAATGTCTATACACTAT
AGACACCTGTATATTTTCAGGCCTTTAAAGTTTTGTTTTAACTTCAGCCATAGTGAACAG
CATGCAGCAAACAAGACTCTGAATTCCAAACCACCAAAGGTATTCTAACAACACCTGTGA
AATGACACATTATGACCCACCCACACAGTGCCAGCAATTGTAGTATCAAAACCACTCATA
ACCTTTTTTTAAAAGTTGAATGCCACTGTGGGGGGAAAAAAACAACAACACGAAAACATA
ACTATAAACAGGGGAAAAACTTTTTTATTGATATGTTTTACTTTGCTGGCAGCCCAGAGC
AAAGGTTTTGTGACCATTTAAAAGATGAAAAAGGTGAAGAATCCCAGAAGCGGTTTATCT
TGAAGCGAGATAACTCTAGTATTGATAAAGAAGACCCTCAGGTTGGTTCTCAAGTTTGAG
AGTGGCTGACATTGTTGTTCTGGAAGGTGGGCTGACTGATGTTCTTGTCTCTCTTCTGTT
GTCCCCGCTCCCTTTCCCAAATCTCGCCTGCCTCTGATACTGCCGTCCGCACCCCCACCT
CATGCCTCTCCCCACTGCCTCCCCCTTCAGCATTCACTGCAAAGCAGAAAACCATGTCCG
GTTGCTTCAGCAATGGCTCTGTGTTGGGCTGCATGGGTGGTGCTTGGCGCAGTGTCTGCT
GCATGTCGTGGGGGGTTGGGGTGCTGTAGGCTCCAAGCTGACGGGAAGAGCTTTGTCAGT
CGCCTTTCCAGATGTCTGTGTAACTCTGGCAGTCGTTCCACTCCCTACAGCTTTATCCTT
CCGTTGTGCACACATTGAACTGGATTATCAATACGGACCGATGAGCAACTGATGTAGCTG
TAAACAACAAACCTTGTTCTGGTGAGGACAGGTGGATTTTGCAACTCTCCTAAAATAAGT
CTTCACAAAAAAAGAATTGAGTTCATGTTTTAGTCCCCTCAACCCCTTTTCCTTCCCACG
TTTTCTGGTCCACGTCAGTCATCTTGCTTGTTTTGC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-959, gnl|bosTau2|chr22 (6833654-6834565)
               

               
               1-959, gnl|Hg17|chr3 (35722303-35723250)
               

               
               1-959, gnl|Mm7|chr9 (111857453-111856374)
               


               
               987-1896, gnl|bosTau2|chr22 (6834564-6835456)
               

               
               987-1896, gnl|Hg17|chr3 (35723249-35724168)
               

               
               987-1896, gnl|Mm7|chr9 (111856375-111855420)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-959, gnl|bosTau2|chr22 (6833654-6834565)
               

               
               1-959, gnl|Hg17|chr3 (35722303-35723250)
               

               
               1-959, gnl|Mm7|chr9 (111857453-111856374)
               


               
               987-1896, gnl|bosTau2|chr22 (6834564-6835456)
               

               
               987-1896, gnl|Hg17|chr3 (35723249-35724168)
               

               
               987-1896, gnl|Mm7|chr9 (111856375-111855420)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-959, gnl\|bosTau2\|chr22 (6833654-6834565)
	1-959, gnl\|Hg17\|chr3 (35722303-35723250)
	1-959, gnl\|Mm7\|chr9 (111857453-111856374)

	987-1896, gnl\|bosTau2\|chr22 (6834564-6835456)
	987-1896, gnl\|Hg17\|chr3 (35723249-35724168)
	987-1896, gnl\|Mm7\|chr9 (111856375-111855420)