Non-Coding RNA Search

Ss1.1-Thy1-THY010092E10.5

Sequence:


               
               ATGGGGGTAAAGGCTTACCAATGGTTGAGTCCAGAATATGTCTTGGTGACGGTTCTGCTG
TGGCCATCCGGATGCTCCTTCATGCAGTTGGGGAAAGAAACTTTCAGGGGGCGGGACCCC
AGGGGCTTTGGCACCAGCTGGGGTTGCTGCCCACGAAGGCTGCTTTTGCAGCCCCTTAAC
GGGGCCTCCTCCTGCCTCTCAAGTGGGCCTCAGGTGGCTTCAGGGGAGGGTGTAAGTCCA
GCACACCGATTGTTTGAGGCATGCATTTTCCTCTTTGCTGCTGACCTCTGTCTGAGGAGG
AAGTTAATAAAACCAGGGTCTTGGTCTCTAATAAACAGCTTCATGAGAAATTTCTTCTAG
GGGAAAAAACACCAAAACCCCCCAACTTTCCCCTCTCACCTGACCCTCTCGAAAAATTCC
ATTAAAAAAACATTTCTCGTGTTCACAGCCAATGAAGAGATGAGCCAAACCACAGCTCCT
GTGTCTGATGGCTCCTGGGTCTAGGAGCCAACTCACCTCACCATGTCATGATTTTTTTTT
CCCCTATTGAGTGGTGTAACGAATATTTGAATAATACAGGCCATCTGCTGTCATTTGGAA
ACCAGTGATGAAGTGTGGCCTATTTTTAATTTCAGTGCAGCAGCACATTTAATATGTGGC
GGCCTCTTAAGATGTGCGTGGCTTCCTATTTCCAGCAGGACACGTGGTGCAAAGGCAGGG
TATGGAGAATGAGCAAAAAGGGAGCCCCAATGTTAGCATCAAAAGCAGGAGCTTCAACAA
CAACAACAAAGGAGTTCCCTGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGGGTAAAGGCTTACCAATGGTTGAGTCCAGAATATGTCTTGGTGACGGTTCTGCTG
TGGCCATCCGGATGCTCCTTCATGCAGTTGGGGAAAGAAACTTTCAGGGGGCGGGACCCC
AGGGGCTTTGGCACCAGCTGGGGTTGCTGCCCACGAAGGCTGCTTTTGCAGCCCCTTAAC
GGGGCCTCCTCCTGCCTCTCAAGTGGGCCTCAGGTGGCTTCAGGGGAGGGTGTAAGTCCA
GCACACCGATTGTTTGAGGCATGCATTTTCCTCTTTGCTGCTGACCTCTGTCTGAGGAGG
AAGTTAATAAAACCAGGGTCTTGGTCTCTAATAAACAGCTTCATGAGAAATTTCTTCTAG
GGGAAAAAACACCAAAACCCCCCAACTTTCCCCTCTCACCTGACCCTCTCGAAAAATTCC
ATTAAAAAAACATTTCTCGTGTTCACAGCCAATGAAGAGATGAGCCAAACCACAGCTCCT
GTGTCTGATGGCTCCTGGGTCTAGGAGCCAACTCACCTCACCATGTCATGATTTTTTTTT
CCCCTATTGAGTGGTGTAACGAATATTTGAATAATACAGGCCATCTGCTGTCATTTGGAA
ACCAGTGATGAAGTGTGGCCTATTTTTAATTTCAGTGCAGCAGCACATTTAATATGTGGC
GGCCTCTTAAGATGTGCGTGGCTTCCTATTTCCAGCAGGACACGTGGTGCAAAGGCAGGG
TATGGAGAATGAGCAAAAAGGGAGCCCCAATGTTAGCATCAAAAGCAGGAGCTTCAACAA
CAACAACAAAGGAGTTCCCTGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               273-385, - strand, RNAz p=0.927365

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-385, - strand, RNAz p=0.927365

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               195-774, gnl|bosTau2|chr16 (30837845-30838386)
               

               
               195-774, gnl|Hg17|chr1 (9663978-9664819)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               195-774, gnl|bosTau2|chr16 (30837845-30838386)
               

               
               195-774, gnl|Hg17|chr1 (9663978-9664819)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	195-774, gnl\|bosTau2\|chr16 (30837845-30838386)
	195-774, gnl\|Hg17\|chr1 (9663978-9664819)