Non-Coding RNA Search

Ss1.1-Thy1-THY010092F01.5

Sequence:


               
               TAGGGTTTTCAGGAAACCGGGAAGCGGCGGCGATGGTAGGATAGCGCTGTTGTGACGGTC
TCCGGGTCCTCTGTGAGAGGAAACGGGAGGATGCCACTGGAGTCATCTTCCTCTTCGATG
CCACTATCTTTCCCTTCTCCCTTACCCTCGGTACCAGACAATATTTCTGACTCTTCCCCT
CCTCCAATGTCTTACATCACTTCCCAGGAGATGAAATGTATTCTTCATTGGTTTGCCAGC
TGGTCAGGTCCTCAGCGTGAACGTTTCCTACAGGACCTGGTTGCTAAGGCAGTACCAGGA
AAATTACAGCCACTGCTGGAAAGTCTAGAGCAGCTTAGTGTGTCTGGAGCAAACCGACCA
CCTTGTATCTTTGAGTGCCAGCTACGTCTTTGGGATCAGTGGTTTCGAGGTTGGGCTGAG
CAGGAGCGCAATGAATTTGTCAGGCAGCTGGAGATCAGTGAGCCAGACTTTGTGGCAAAG
TTTTACCAAGCAATGGCTGCTACAGCTGGTAAAGACTGACAGGTATTAAAATCAAAGAAG
ATAACCAGAAGTGTTGGAGCCAAGGCCACAACTTTACCATGAGAATTTCGCATGTATTAC
TTAAAGGTATGGGGATGGTATTCCAATCAGCTGTCTGAACTCGCTGAAGTACAGGCCTGG
TGATTTCAACGTGAACAGCCTATCAGCTGGACTCCTGATAAATGTGTAAATGTCCTCCAT
CGGAGTGAATCCAGATCATCAGTCTGCCTCCTACTTGGTTCGTTCCAAGACATGTCAAAC
CCTCAAAGAATTTAAAGACTTTTGCAACCATAACCAAAAGGAATCTATATACACATTGCT
GGCCTGTGGGGTATAAAGTAGAGCCTTCCTATTCCAGAAAGGGGCCGTAAAAGGTCACGT
TTTTATAACTTACCTGGATTCGGATGGTGGTTTCACCACTCCTACCAGCTTCTGGCATAA
TTATGTGAGATTTAAACTGCAAGCTTGAATTTTGGAAAAATCAGGAGATGGAGATACTTA
CTCCTTCCTCCACACTGATGTTTTTTAGAACCCAAAAAGCAGTGACTTTTGGAGTTCCCT
TGTGATATAGCAGGTTAATGACCCAGCGTTGCCACTGCAGCCACTTGGGTTGCTGCCATG
GCGCTGGTTTGATCCCCAGCCCAGGAACTTTTACATGCCATGGGTGTGGCCAAACCCCCC
CACAAAATAGCAATGACTTTTTTCTAATGTGTATGTGACATCCTTGAAGCTGGTAGCATA
TATTCCTATTCTGTAAGTTTACTCTACAGGAATATGAAAACAGTTGACATTCCTTACAGG
TTGAAGGGTTTATTTTTTGTATCAAAATAAAGAATGAATTTTCAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGGTTTTCAGGAAACCGGGAAGCGGCGGCGATGGTAGGATAGCGCTGTTGTGACGGTC
TCCGGGTCCTCTGTGAGAGGAAACGGGAGGATGCCACTGGAGTCATCTTCCTCTTCGATG
CCACTATCTTTCCCTTCTCCCTTACCCTCGGTACCAGACAATATTTCTGACTCTTCCCCT
CCTCCAATGTCTTACATCACTTCCCAGGAGATGAAATGTATTCTTCATTGGTTTGCCAGC
TGGTCAGGTCCTCAGCGTGAACGTTTCCTACAGGACCTGGTTGCTAAGGCAGTACCAGGA
AAATTACAGCCACTGCTGGAAAGTCTAGAGCAGCTTAGTGTGTCTGGAGCAAACCGACCA
CCTTGTATCTTTGAGTGCCAGCTACGTCTTTGGGATCAGTGGTTTCGAGGTTGGGCTGAG
CAGGAGCGCAATGAATTTGTCAGGCAGCTGGAGATCAGTGAGCCAGACTTTGTGGCAAAG
TTTTACCAAGCAATGGCTGCTACAGCTGGTAAAGACTGACAGGTATTAAAATCAAAGAAG
ATAACCAGAAGTGTTGGAGCCAAGGCCACAACTTTACCATGAGAATTTCGCATGTATTAC
TTAAAGGTATGGGGATGGTATTCCAATCAGCTGTCTGAACTCGCTGAAGTACAGGCCTGG
TGATTTCAACGTGAACAGCCTATCAGCTGGACTCCTGATAAATGTGTAAATGTCCTCCAT
CGGAGTGAATCCAGATCATCAGTCTGCCTCCTACTTGGTTCGTTCCAAGACATGTCAAAC
CCTCAAAGAATTTAAAGACTTTTGCAACCATAACCAAAAGGAATCTATATACACATTGCT
GGCCTGTGGGGTATAAAGTAGAGCCTTCCTATTCCAGAAAGGGGCCGTAAAAGGTCACGT
TTTTATAACTTACCTGGATTCGGATGGTGGTTTCACCACTCCTACCAGCTTCTGGCATAA
TTATGTGAGATTTAAACTGCAAGCTTGAATTTTGGAAAAATCAGGAGATGGAGATACTTA
CTCCTTCCTCCACACTGATGTTTTTTAGAACCCAAAAAGCAGTGACTTTTGGAGTTCCCT
TGTGATATAGCAGGTTAATGACCCAGCGTTGCCACTGCAGCCACTTGGGTTGCTGCCATG
GCGCTGGTTTGATCCCCAGCCCAGGAACTTTTACATGCCATGGGTGTGGCCAAACCCCCC
CACAAAATAGCAATGACTTTTTTCTAATGTGTATGTGACATCCTTGAAGCTGGTAGCATA
TATTCCTATTCTGTAAGTTTACTCTACAGGAATATGAAAACAGTTGACATTCCTTACAGG
TTGAAGGGTTTATTTTTTGTATCAAAATAAAGAATGAATTTTCAGAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61838287|ref|XP_584475.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61838287|ref|XP_584475.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               127-326, - strand, RNAz p=0.942372
               

               
               407-526, + strand, RNAz p=0.967672

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-326, - strand, RNAz p=0.942372
               

               
               407-526, + strand, RNAz p=0.967672

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017924, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017924, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               88-761, gnl|bosTau2|chr10 (13962192-13961532)
               

               
               88-761, gnl|Hg17|chr14 (22636705-22637388)
               

               
               88-761, gnl|Mm7|chr14 (49556736-49557488)
               


               
               1205-1367, gnl|bosTau2|chr10 (13961252-13961088)
               

               
               1205-1367, gnl|Hg17|chr14 (22637696-22638164)
               

               
               1205-1367, gnl|Mm7|chr14 (49557707-49557880)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-761, gnl|bosTau2|chr10 (13962192-13961532)
               

               
               88-761, gnl|Hg17|chr14 (22636705-22637388)
               

               
               88-761, gnl|Mm7|chr14 (49556736-49557488)
               


               
               1205-1367, gnl|bosTau2|chr10 (13961252-13961088)
               

               
               1205-1367, gnl|Hg17|chr14 (22637696-22638164)
               

               
               1205-1367, gnl|Mm7|chr14 (49557707-49557880)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               amn (0.417711)
               

               
               eye (0.341006)
               

               
               nbm (0.297974)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               eye (0.341006)
               

               
               nbm (0.297974)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	127-326, - strand, RNAz p=0.942372
	407-526, + strand, RNAz p=0.967672

	88-761, gnl\|bosTau2\|chr10 (13962192-13961532)
	88-761, gnl\|Hg17\|chr14 (22636705-22637388)
	88-761, gnl\|Mm7\|chr14 (49556736-49557488)

	1205-1367, gnl\|bosTau2\|chr10 (13961252-13961088)
	1205-1367, gnl\|Hg17\|chr14 (22637696-22638164)
	1205-1367, gnl\|Mm7\|chr14 (49557707-49557880)

	amn (0.417711)
	eye (0.341006)
	nbm (0.297974)
	cga (0.279096)
	pla (0.267344)
	ece (0.229305)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	ton (0.1755)
	cut (0.169924)
	pty (0.142714)
	cst (0.140036)
	ste (0.135208)
	tra (0.123092)
	clu (0.119646)
	cbl (0.114797)
	cty (0.10408)