Ss1.1-Thy1-THY010092F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGCGCTCCGGCGTCTCCGCGCGCGATTTAAAACCGGCTCTGGCGACTCCGAAGACGAG ATGGGACCTCCTTGTCCGGCCACAATGAATAAGTCTCCTTCAGAGACCCGAGGACGCCCC CATAGCGCCTCCTCACCTTCGGAGCGGGTATTCTCCATGCCCCATCCCAGGAAGGCCCCT CTCAGTACTGCTGGCACCCCAGTCCTTGAAGACTTTCCTCAGAATGATGACGAAAAGGAG CGACTGCAGCGGAGGCGCTCTAGGGTCTTTGACCTGCAGTTCAGCACAGACTCGCCTCGT TTGCTGGCGTCCCCATCCAGCAGGAATATTGATGTTTCAGCAACAATTCCTAAATTTACA AACACACAAATTACTGAGCATTACTCCACCTGTATCAAACTGTCCACTGAAAATAAAATC ACTACCAAGAATGCTTTTGGCTTGCACTTGATTGATTTTATGTCAGAGATTCTTAAACAG AAAGATGCCGAACCAACCAACTTTAAAGTGGCTGCTGGCACTCTGGATGCCAGCACCAAG ATCTATGCTGTGCGTGTAGATGCTGTCCATGCCGATGTGTACAGAGTCCTCGGGGGCCTG GGCAAGGATGCACCATGTCCGGAAGAAGCAGAGGACCATGGTGCAGATGGAAGTGCAGTT GAAACAGGAACAACCAAGAAGGCTCCGAAACCAAGGAAGAAGCACTCATGTAAAACCGTA GAGCAGAATATAAACAACCTCAACGTATCTGCAGCAGATCGAAAGTGTGAGGTGGATCCC ATGTTCCAGAAGACGGCAGCCTCGTTTGATGAGTGCAGCACAGCAGGGGTGTTTCTCTCC ACCCTGCACTGCCACGACTATAGCAGTGAGCTGCTCTTCCCCTCCGATGTCCAGACTCTC TCCACCGGAGAACCCCCGGAGTTGCCCGATTTAGGTTGGGTGGAGATGACCGATTTAAAA GCGCCCCTGCAGCAATGTGTGGAGGATCGCCAGATCTGCCCTTCCCTGGCCGGGTTCCAG TTCACTAAATGGGACAGCGAAACACATAATGAGTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGCGCTCCGGCGTCTCCGCGCGCGATTTAAAACCGGCTCTGGCGACTCCGAAGACGAG ATGGGACCTCCTTGTCCGGCCACAATGAATAAGTCTCCTTCAGAGACCCGAGGACGCCCC CATAGCGCCTCCTCACCTTCGGAGCGGGTATTCTCCATGCCCCATCCCAGGAAGGCCCCT CTCAGTACTGCTGGCACCCCAGTCCTTGAAGACTTTCCTCAGAATGATGACGAAAAGGAG CGACTGCAGCGGAGGCGCTCTAGGGTCTTTGACCTGCAGTTCAGCACAGACTCGCCTCGT TTGCTGGCGTCCCCATCCAGCAGGAATATTGATGTTTCAGCAACAATTCCTAAATTTACA AACACACAAATTACTGAGCATTACTCCACCTGTATCAAACTGTCCACTGAAAATAAAATC ACTACCAAGAATGCTTTTGGCTTGCACTTGATTGATTTTATGTCAGAGATTCTTAAACAG AAAGATGCCGAACCAACCAACTTTAAAGTGGCTGCTGGCACTCTGGATGCCAGCACCAAG ATCTATGCTGTGCGTGTAGATGCTGTCCATGCCGATGTGTACAGAGTCCTCGGGGGCCTG GGCAAGGATGCACCATGTCCGGAAGAAGCAGAGGACCATGGTGCAGATGGAAGTGCAGTT GAAACAGGAACAACCAAGAAGGCTCCGAAACCAAGGAAGAAGCACTCATGTAAAACCGTA GAGCAGAATATAAACAACCTCAACGTATCTGCAGCAGATCGAAAGTGTGAGGTGGATCCC ATGTTCCAGAAGACGGCAGCCTCGTTTGATGAGTGCAGCACAGCAGGGGTGTTTCTCTCC ACCCTGCACTGCCACGACTATAGCAGTGAGCTGCTCTTCCCCTCCGATGTCCAGACTCTC TCCACCGGAGAACCCCCGGAGTTGCCCGATTTAGGTTGGGTGGAGATGACCGATTTAAAA GCGCCCCTGCAGCAATGTGTGGAGGATCGCCAGATCTGCCCTTCCCTGGCCGGGTTCCAG TTCACTAAATGGGACAGCGAAACACATAATGAGTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 79-197, - strand, RNAz p=0.833087 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-197, - strand, RNAz p=0.833087 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 79-324, gnl|bosTau2|chr11 (1672908-1672663) | |
| 79-324, gnl|Hg17|chr2 (96429262-96429507) | |
| 79-324, gnl|Mm7|chr2 (126868576-126868337) | |
| 508-646, gnl|bosTau2|chr11 (1671518-1671380) | |
| 508-646, gnl|canFam2|chr17 (37543874-37543971) | |
| 508-646, gnl|danRer3|chr5 (19439370-19439274) | |
| 508-646, gnl|dasNov1|scaffold_190170 (4471-4568) | |
| 508-646, gnl|echTel1|scaffold_273966 (3371-3274) | |
| 508-646, gnl|fr1|chrUn (290022578-290022674) | |
| 508-646, gnl|galGal2|chrUn (65348007-65348104) | |
| 508-646, gnl|hg17|chr2 (96430777-96430874) | |
| 508-646, gnl|Hg17|chr2 (96430778-96430916) | |
| 508-646, gnl|mm7|chr2 (126866542-126866445) | |
| 508-646, gnl|Mm7|chr2 (126866539-126866404) | |
| 508-646, gnl|monDom2|scaffold_1 (67444644-67444741) | |
| 508-646, gnl|oryCun1|scaffold_214016 (30699-30602) | |
| 508-646, gnl|panTro1|chr12 (99443561-99443658) | |
| 508-646, gnl|rheMac2|chr13 (96843427-96843524) | |
| 508-646, gnl|rn3|chr3 (114575909-114575812) | |
| 508-646, gnl|tetNig1|chr12 (12234301-12234398) | |
| 508-646, gnl|xenTro1|scaffold_217 (39114-39211) | |
| 770-961, gnl|bosTau2|chr11 (1664072-1663881) | |
| 770-961, gnl|canFam2|chr17 (37551184-37551326) | |
| 770-961, gnl|danRer3|chr5 (19438253-19438124) | |
| 770-961, gnl|dasNov1|scaffold_45509 (39932-40075) | |
| 770-961, gnl|echTel1|scaffold_61938 (428-587) | |
| 770-961, gnl|fr1|chrUn (290023174-290023313) | |
| 770-961, gnl|galGal2|chrUn (65349114-65349256) | |
| 770-961, gnl|hg17|chr2 (96439433-96439575) | |
| 770-961, gnl|Hg17|chr2 (96439441-96439632) | |
| 770-961, gnl|mm7|chr2 (126864589-126864449) | |
| 770-961, gnl|Mm7|chr2 (126864581-126864390) | |
| 770-961, gnl|monDom2|scaffold_1 (67452360-67452502) | |
| 770-961, gnl|panTro1|chr12 (99452224-99452366) | |
| 770-961, gnl|rheMac2|chr13 (96852205-96852347) | |
| 770-961, gnl|rn3|chr3 (114573907-114573767) | |
| 770-961, gnl|tetNig1|chr12 (12234831-12234962) | |
| 770-961, gnl|xenTro1|scaffold_217 (41951-42093) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-324, gnl|bosTau2|chr11 (1672908-1672663) | |
| 79-324, gnl|Hg17|chr2 (96429262-96429507) | |
| 79-324, gnl|Mm7|chr2 (126868576-126868337) | |
| 508-646, gnl|bosTau2|chr11 (1671518-1671380) | |
| 508-646, gnl|canFam2|chr17 (37543874-37543971) | |
| 508-646, gnl|danRer3|chr5 (19439370-19439274) | |
| 508-646, gnl|dasNov1|scaffold_190170 (4471-4568) | |
| 508-646, gnl|echTel1|scaffold_273966 (3371-3274) | |
| 508-646, gnl|fr1|chrUn (290022578-290022674) | |
| 508-646, gnl|galGal2|chrUn (65348007-65348104) | |
| 508-646, gnl|hg17|chr2 (96430777-96430874) | |
| 508-646, gnl|Hg17|chr2 (96430778-96430916) | |
| 508-646, gnl|mm7|chr2 (126866542-126866445) | |
| 508-646, gnl|Mm7|chr2 (126866539-126866404) | |
| 508-646, gnl|monDom2|scaffold_1 (67444644-67444741) | |
| 508-646, gnl|oryCun1|scaffold_214016 (30699-30602) | |
| 508-646, gnl|panTro1|chr12 (99443561-99443658) | |
| 508-646, gnl|rheMac2|chr13 (96843427-96843524) | |
| 508-646, gnl|rn3|chr3 (114575909-114575812) | |
| 508-646, gnl|tetNig1|chr12 (12234301-12234398) | |
| 508-646, gnl|xenTro1|scaffold_217 (39114-39211) | |
| 770-961, gnl|bosTau2|chr11 (1664072-1663881) | |
| 770-961, gnl|canFam2|chr17 (37551184-37551326) | |
| 770-961, gnl|danRer3|chr5 (19438253-19438124) | |
| 770-961, gnl|dasNov1|scaffold_45509 (39932-40075) | |
| 770-961, gnl|echTel1|scaffold_61938 (428-587) | |
| 770-961, gnl|fr1|chrUn (290023174-290023313) | |
| 770-961, gnl|galGal2|chrUn (65349114-65349256) | |
| 770-961, gnl|hg17|chr2 (96439433-96439575) | |
| 770-961, gnl|Hg17|chr2 (96439441-96439632) | |
| 770-961, gnl|mm7|chr2 (126864589-126864449) | |
| 770-961, gnl|Mm7|chr2 (126864581-126864390) | |
| 770-961, gnl|monDom2|scaffold_1 (67452360-67452502) | |
| 770-961, gnl|panTro1|chr12 (99452224-99452366) | |
| 770-961, gnl|rheMac2|chr13 (96852205-96852347) | |
| 770-961, gnl|rn3|chr3 (114573907-114573767) | |
| 770-961, gnl|tetNig1|chr12 (12234831-12234962) | |
| 770-961, gnl|xenTro1|scaffold_217 (41951-42093) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| ute (0.132784) |