Non-Coding RNA Search

Ss1.1-Thy1-THY010092G09.5

Sequence:


               
               AAAAGAGTTTGAATCCTACCAGGTGGCCGCAAGGACCTCCTCAACCTTCAAAATCCTGAC
CAGCCTCAGCCACCGCCACCTCCTCCTCCTTCTACATCCCTGACTCCCCGAGGTCTCCAG
AACAACGAGAGTGGACCGCCGCCATGTCCGAGGCTTATTTCCGGGTGGAGTCGGGTGCGC
TGGGGCCTGAGGAGAACTTTCTTTCCCTGGACGATATCCTGATGTCCCACGAAAAGCTCC
CGGTGCGCACTGAGATCCCCATGCCGCGCCTCGGCACTTTCTTCCTGGACCGGAGCGGAG
GGGCCGAGACAGACAACACGATCCCTCAGGGCTCCAAGCTTGAGCTCCCTTTGTGGCTAG
CAAAAGGACTTTTCGACAACAAGCGGCGGATCCTTTCGGTGGAACTTCCCAAGATCTACC
AGGAGGGTTGGAGGACGGTGTTCGGTGCAGATGCCAACGTGGTGGACCTCCACAAAATGG
GGCCTCACTTCTACGGGTTCGGCTCCCAGCTCCTGCATTTTGACAGCCCAGAGAATGCAG
ACATCTCCCAGGCTCTCCTGCAGACGTTTATTGGCCGCTTCCGCCGCATCATGGACTCCG
CCCAGAACGCTTACAACGAAGACACTTCGGCACTGGTAGCCAGGCTGGACGAAATGGAGA
GAGGCTTGTTTCAAACAGGGCAGAAAGGACTGAATGACTTTCAGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAGTTTGAATCCTACCAGGTGGCCGCAAGGACCTCCTCAACCTTCAAAATCCTGAC
CAGCCTCAGCCACCGCCACCTCCTCCTCCTTCTACATCCCTGACTCCCCGAGGTCTCCAG
AACAACGAGAGTGGACCGCCGCCATGTCCGAGGCTTATTTCCGGGTGGAGTCGGGTGCGC
TGGGGCCTGAGGAGAACTTTCTTTCCCTGGACGATATCCTGATGTCCCACGAAAAGCTCC
CGGTGCGCACTGAGATCCCCATGCCGCGCCTCGGCACTTTCTTCCTGGACCGGAGCGGAG
GGGCCGAGACAGACAACACGATCCCTCAGGGCTCCAAGCTTGAGCTCCCTTTGTGGCTAG
CAAAAGGACTTTTCGACAACAAGCGGCGGATCCTTTCGGTGGAACTTCCCAAGATCTACC
AGGAGGGTTGGAGGACGGTGTTCGGTGCAGATGCCAACGTGGTGGACCTCCACAAAATGG
GGCCTCACTTCTACGGGTTCGGCTCCCAGCTCCTGCATTTTGACAGCCCAGAGAATGCAG
ACATCTCCCAGGCTCTCCTGCAGACGTTTATTGGCCGCTTCCGCCGCATCATGGACTCCG
CCCAGAACGCTTACAACGAAGACACTTCGGCACTGGTAGCCAGGCTGGACGAAATGGAGA
GAGGCTTGTTTCAAACAGGGCAGAAAGGACTGAATGACTTTCAGTGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877699|ref|XP_583816.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877699|ref|XP_583816.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-330, gnl|bosTau2|chr18 (23098502-23098838)
               

               
               1-330, gnl|Hg17|chr16 (56983876-56984193)
               


               
               554-708, gnl|bosTau2|chr18 (23103471-23103625)
               

               
               554-708, gnl|Hg17|chr16 (56995894-56996048)
               

               
               554-708, gnl|Mm7|chr8 (94232051-94232205)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-330, gnl|bosTau2|chr18 (23098502-23098838)
               

               
               1-330, gnl|Hg17|chr16 (56983876-56984193)
               


               
               554-708, gnl|bosTau2|chr18 (23103471-23103625)
               

               
               554-708, gnl|Hg17|chr16 (56995894-56996048)
               

               
               554-708, gnl|Mm7|chr8 (94232051-94232205)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-330, gnl\|bosTau2\|chr18 (23098502-23098838)
	1-330, gnl\|Hg17\|chr16 (56983876-56984193)

	554-708, gnl\|bosTau2\|chr18 (23103471-23103625)
	554-708, gnl\|Hg17\|chr16 (56995894-56996048)
	554-708, gnl\|Mm7\|chr8 (94232051-94232205)