Ss1.1-Thy1-THY010093A07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGTGAATGAAGAAAATGATTGTAACATTGCACTCTATGAACATACAATTAATAAAGATA CCACCCACTTGGAGATTGAACCCTTCACTCTTCTTGGCGTTTGTGCTGGCCTGATCCCAT ACCCTCATCATAACCAGTCCCCGAGAAACACATATCAGTGTGCCATGGGGAAACAAGCCA TGGGTACCATTGGATACAACCAGCGGAACAGAATTGATACTCTCATGTATCTCCTCGCAT ATCCACAAAAACCCATGGTTAAAACAAAGACCATTGAACTGATAGAATTTGAGAAACTGC CAGCTGGGCAGAATGCGACAGTTGCTGTGATGAGTTACAGTGGCTATGATATTGAAGATG CTCTTGTTTTAAACAAGGCTTCCTTGGACAGAGGCTTTGGGCGTTGCCTTGTATATAAAA ATGCTAAATGTACATTGAAGCGATATACCAATCAGACTTTTGATAAAGTGATGGGGCCAG TGTTGGATGCTGCTACAAGAAAACCCATCTGGCGACATGAAATTTTAGATGCAGATGGTA TTTGTTCTCCAGGTGAGAAAGTGGAGAACAAGCAAGTGCTTGTCAATAAGTCCATGCCCA CAGTGACTCAGATCCCCTTGGAAGGAAGTAATGTTCCACAGCAGCCGCAGTACAAAGATG TGCCCATCACCTACAAAGGAGCGACGGATTCATATATCGAAAAAGTGATGATATCTTCGA ATGCCGAAGATGCTTTTCTGATCAAAATGCTGCTGAGACAGACAAGGCGTCCAGAGATTG GAGACAAGTTTAGCAGTCGTCATGGGCAAAAAGGTGTCTGTGGCTTGATCGTCCCTCAAG AAGACATGCCATTTTGTGATTCTGGCATCTGTCCCGACATCATCATGAACCCCCATGGCT TCCCATCTCGAATGACGGTGGGAAAGTTAATTGAACTGCTGGCAGGCAAGGCCGGCGTGT TGGACGGCCGATTCCACTACGGCACTGCCTTTGGGGGCAGCAAAGTGAAGGACGTGTGTG AAGACCTCGTTCGCCACGGATACAACTACTTGGGGAAAGACTACGTTACATCTGGCATCA CAGGTGAGCCCTTAGAAGCCTACATCTATTTTGGCCCCGTGTACTACCAGAAACTGAAAC ACATGGTGCTAGATAAGATGCATGCCCGGGCCCGAGGACCACGAGCTGTCCTCACCAGGC AGCCCACTGAAGGCCGATCTCGAGACGGTGGTTTGCGTCTTGGAGAAATGGAACGTGACT GTTTAATTGGCTATGGAGCCAGTATGCTTTTACTGGAGAGACTAATGATTTCAAGCGATG CCTTTGAGGTTGATGTCTGCGGGCAGTGCGGGCTTCTGGGATACTCCGGCTGGTGCCATT ACTGCAAGTCGTCCTGCCACGTGTCCTCCCTCCGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGTGAATGAAGAAAATGATTGTAACATTGCACTCTATGAACATACAATTAATAAAGATA CCACCCACTTGGAGATTGAACCCTTCACTCTTCTTGGCGTTTGTGCTGGCCTGATCCCAT ACCCTCATCATAACCAGTCCCCGAGAAACACATATCAGTGTGCCATGGGGAAACAAGCCA TGGGTACCATTGGATACAACCAGCGGAACAGAATTGATACTCTCATGTATCTCCTCGCAT ATCCACAAAAACCCATGGTTAAAACAAAGACCATTGAACTGATAGAATTTGAGAAACTGC CAGCTGGGCAGAATGCGACAGTTGCTGTGATGAGTTACAGTGGCTATGATATTGAAGATG CTCTTGTTTTAAACAAGGCTTCCTTGGACAGAGGCTTTGGGCGTTGCCTTGTATATAAAA ATGCTAAATGTACATTGAAGCGATATACCAATCAGACTTTTGATAAAGTGATGGGGCCAG TGTTGGATGCTGCTACAAGAAAACCCATCTGGCGACATGAAATTTTAGATGCAGATGGTA TTTGTTCTCCAGGTGAGAAAGTGGAGAACAAGCAAGTGCTTGTCAATAAGTCCATGCCCA CAGTGACTCAGATCCCCTTGGAAGGAAGTAATGTTCCACAGCAGCCGCAGTACAAAGATG TGCCCATCACCTACAAAGGAGCGACGGATTCATATATCGAAAAAGTGATGATATCTTCGA ATGCCGAAGATGCTTTTCTGATCAAAATGCTGCTGAGACAGACAAGGCGTCCAGAGATTG GAGACAAGTTTAGCAGTCGTCATGGGCAAAAAGGTGTCTGTGGCTTGATCGTCCCTCAAG AAGACATGCCATTTTGTGATTCTGGCATCTGTCCCGACATCATCATGAACCCCCATGGCT TCCCATCTCGAATGACGGTGGGAAAGTTAATTGAACTGCTGGCAGGCAAGGCCGGCGTGT TGGACGGCCGATTCCACTACGGCACTGCCTTTGGGGGCAGCAAAGTGAAGGACGTGTGTG AAGACCTCGTTCGCCACGGATACAACTACTTGGGGAAAGACTACGTTACATCTGGCATCA CAGGTGAGCCCTTAGAAGCCTACATCTATTTTGGCCCCGTGTACTACCAGAAACTGAAAC ACATGGTGCTAGATAAGATGCATGCCCGGGCCCGAGGACCACGAGCTGTCCTCACCAGGC AGCCCACTGAAGGCCGATCTCGAGACGGTGGTTTGCGTCTTGGAGAAATGGAACGTGACT GTTTAATTGGCTATGGAGCCAGTATGCTTTTACTGGAGAGACTAATGATTTCAAGCGATG CCTTTGAGGTTGATGTCTGCGGGCAGTGCGGGCTTCTGGGATACTCCGGCTGGTGCCATT ACTGCAAGTCGTCCTGCCACGTGTCCTCCCTCCGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 698-815, + strand, RNAz p=0.744878 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 698-815, + strand, RNAz p=0.744878 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 183-394, gnl|bosTau2|chr5 (41260077-41259866) | |
| 183-394, gnl|Hg17|chr12 (105350746-105350957) | |
| 183-394, gnl|Mm7|chr10 (84234160-84234371) | |
| 666-815, gnl|bosTau2|chr5 (41254866-41254717) | |
| 666-815, gnl|canFam2|chr10 (35359743-35359513) | |
| 666-815, gnl|danRer3|chr18 (11216827-11216974) | |
| 666-815, gnl|dasNov1|scaffold_13443 (34532-34752) | |
| 666-815, gnl|echTel1|scaffold_295242 (32199-31973) | |
| 666-815, gnl|fr1|chrUn (217441588-217441393) | |
| 666-815, gnl|galGal2|chr1 (50544805-50544600) | |
| 666-815, gnl|hg17|chr12 (105359670-105359900) | |
| 666-815, gnl|Hg17|chr12 (105359718-105359867) | |
| 666-815, gnl|loxAfr1|scaffold_4754 (104737-104967) | |
| 666-815, gnl|mm7|chr10 (84240722-84240907) | |
| 666-815, gnl|Mm7|chr10 (84240758-84240907) | |
| 666-815, gnl|monDom2|scaffold_34 (6891882-6891658) | |
| 666-815, gnl|oryCun1|scaffold_172977 (6350-6122) | |
| 666-815, gnl|panTro1|chr10 (107871418-107871648) | |
| 666-815, gnl|rheMac2|chr11 (107549606-107549836) | |
| 666-815, gnl|rn3|chr7 (21218702-21218505) | |
| 666-815, gnl|tetNig1|chr13 (4639803-4639655) | |
| 666-815, gnl|xenTro1|scaffold_951 (369838-370028) | |
| 917-1088, gnl|bosTau2|chr5 (41233007-41232835) | |
| 917-1088, gnl|canFam2|chr10 (35339417-35339261) | |
| 917-1088, gnl|danRer3|chr18 (11226263-11226421) | |
| 917-1088, gnl|dasNov1|scaffold_149972 (40043-40201) | |
| 917-1088, gnl|echTel1|scaffold_295242 (12632-12474) | |
| 917-1088, gnl|fr1|chrUn (217438838-217438684) | |
| 917-1088, gnl|galGal2|chr1 (50534838-50534680) | |
| 917-1088, gnl|hg17|chr12 (105392991-105393149) | |
| 917-1088, gnl|Hg17|chr12 (105392996-105393168) | |
| 917-1088, gnl|loxAfr1|scaffold_23333 (19686-19844) | |
| 917-1088, gnl|mm7|chr10 (84255600-84255761) | |
| 917-1088, gnl|Mm7|chr10 (84255608-84255780) | |
| 917-1088, gnl|monDom2|scaffold_34 (6871645-6871487) | |
| 917-1088, gnl|oryCun1|scaffold_173875 (16697-16855) | |
| 917-1088, gnl|panTro1|chr10 (107898696-107898854) | |
| 917-1088, gnl|rheMac2|chr11 (107576695-107576853) | |
| 917-1088, gnl|rn3|chr7 (21203396-21203233) | |
| 917-1088, gnl|tetNig1|chr13 (4637154-4637000) | |
| 917-1088, gnl|xenTro1|scaffold_951 (378459-378617) | |
| 1197-1374, gnl|bosTau2|chr5 (41226652-41226475) | |
| 1197-1374, gnl|canFam2|chr10 (35332176-35331993) | |
| 1197-1374, gnl|danRer3|chr18 (11227591-11227774) | |
| 1197-1374, gnl|dasNov1|scaffold_13741 (9129-8946) | |
| 1197-1374, gnl|echTel1|scaffold_295242 (4223-4040) | |
| 1197-1374, gnl|fr1|chrUn (217438123-217437942) | |
| 1197-1374, gnl|galGal2|chr1 (50527611-50527428) | |
| 1197-1374, gnl|hg17|chr12 (105400325-105400508) | |
| 1197-1374, gnl|Hg17|chr12 (105400324-105400501) | |
| 1197-1374, gnl|loxAfr1|scaffold_23333 (28231-28393) | |
| 1197-1374, gnl|mm7|chr10 (84261707-84261890) | |
| 1197-1374, gnl|Mm7|chr10 (84261706-84261883) | |
| 1197-1374, gnl|monDom2|scaffold_34 (6865798-6865615) | |
| 1197-1374, gnl|oryCun1|scaffold_132686 (3763-3580) | |
| 1197-1374, gnl|panTro1|chr10 (107906015-107906198) | |
| 1197-1374, gnl|rheMac2|chr11 (107583973-107584156) | |
| 1197-1374, gnl|rn3|chr7 (21196170-21195987) | |
| 1197-1374, gnl|tetNig1|chr13 (4636484-4636303) | |
| 1197-1374, gnl|xenTro1|scaffold_951 (380073-380256) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 183-394, gnl|bosTau2|chr5 (41260077-41259866) | |
| 183-394, gnl|Hg17|chr12 (105350746-105350957) | |
| 183-394, gnl|Mm7|chr10 (84234160-84234371) | |
| 666-815, gnl|bosTau2|chr5 (41254866-41254717) | |
| 666-815, gnl|canFam2|chr10 (35359743-35359513) | |
| 666-815, gnl|danRer3|chr18 (11216827-11216974) | |
| 666-815, gnl|dasNov1|scaffold_13443 (34532-34752) | |
| 666-815, gnl|echTel1|scaffold_295242 (32199-31973) | |
| 666-815, gnl|fr1|chrUn (217441588-217441393) | |
| 666-815, gnl|galGal2|chr1 (50544805-50544600) | |
| 666-815, gnl|hg17|chr12 (105359670-105359900) | |
| 666-815, gnl|Hg17|chr12 (105359718-105359867) | |
| 666-815, gnl|loxAfr1|scaffold_4754 (104737-104967) | |
| 666-815, gnl|mm7|chr10 (84240722-84240907) | |
| 666-815, gnl|Mm7|chr10 (84240758-84240907) | |
| 666-815, gnl|monDom2|scaffold_34 (6891882-6891658) | |
| 666-815, gnl|oryCun1|scaffold_172977 (6350-6122) | |
| 666-815, gnl|panTro1|chr10 (107871418-107871648) | |
| 666-815, gnl|rheMac2|chr11 (107549606-107549836) | |
| 666-815, gnl|rn3|chr7 (21218702-21218505) | |
| 666-815, gnl|tetNig1|chr13 (4639803-4639655) | |
| 666-815, gnl|xenTro1|scaffold_951 (369838-370028) | |
| 917-1088, gnl|bosTau2|chr5 (41233007-41232835) | |
| 917-1088, gnl|canFam2|chr10 (35339417-35339261) | |
| 917-1088, gnl|danRer3|chr18 (11226263-11226421) | |
| 917-1088, gnl|dasNov1|scaffold_149972 (40043-40201) | |
| 917-1088, gnl|echTel1|scaffold_295242 (12632-12474) | |
| 917-1088, gnl|fr1|chrUn (217438838-217438684) | |
| 917-1088, gnl|galGal2|chr1 (50534838-50534680) | |
| 917-1088, gnl|hg17|chr12 (105392991-105393149) | |
| 917-1088, gnl|Hg17|chr12 (105392996-105393168) | |
| 917-1088, gnl|loxAfr1|scaffold_23333 (19686-19844) | |
| 917-1088, gnl|mm7|chr10 (84255600-84255761) | |
| 917-1088, gnl|Mm7|chr10 (84255608-84255780) | |
| 917-1088, gnl|monDom2|scaffold_34 (6871645-6871487) | |
| 917-1088, gnl|oryCun1|scaffold_173875 (16697-16855) | |
| 917-1088, gnl|panTro1|chr10 (107898696-107898854) | |
| 917-1088, gnl|rheMac2|chr11 (107576695-107576853) | |
| 917-1088, gnl|rn3|chr7 (21203396-21203233) | |
| 917-1088, gnl|tetNig1|chr13 (4637154-4637000) | |
| 917-1088, gnl|xenTro1|scaffold_951 (378459-378617) | |
| 1197-1374, gnl|bosTau2|chr5 (41226652-41226475) | |
| 1197-1374, gnl|canFam2|chr10 (35332176-35331993) | |
| 1197-1374, gnl|danRer3|chr18 (11227591-11227774) | |
| 1197-1374, gnl|dasNov1|scaffold_13741 (9129-8946) | |
| 1197-1374, gnl|echTel1|scaffold_295242 (4223-4040) | |
| 1197-1374, gnl|fr1|chrUn (217438123-217437942) | |
| 1197-1374, gnl|galGal2|chr1 (50527611-50527428) | |
| 1197-1374, gnl|hg17|chr12 (105400325-105400508) | |
| 1197-1374, gnl|Hg17|chr12 (105400324-105400501) | |
| 1197-1374, gnl|loxAfr1|scaffold_23333 (28231-28393) | |
| 1197-1374, gnl|mm7|chr10 (84261707-84261890) | |
| 1197-1374, gnl|Mm7|chr10 (84261706-84261883) | |
| 1197-1374, gnl|monDom2|scaffold_34 (6865798-6865615) | |
| 1197-1374, gnl|oryCun1|scaffold_132686 (3763-3580) | |
| 1197-1374, gnl|panTro1|chr10 (107906015-107906198) | |
| 1197-1374, gnl|rheMac2|chr11 (107583973-107584156) | |
| 1197-1374, gnl|rn3|chr7 (21196170-21195987) | |
| 1197-1374, gnl|tetNig1|chr13 (4636484-4636303) | |
| 1197-1374, gnl|xenTro1|scaffold_951 (380073-380256) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| clu (0.239292) | |
| ill (0.175593) | |
| cut (0.169924) | |
| cje (0.165235) | |
| ese (0.126502) | |
| pgl (0.118483) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| ill (0.175593) | |
| cut (0.169924) | |
| cje (0.165235) | |
| ese (0.126502) | |
| pgl (0.118483) |