Non-Coding RNA Search

Ss1.1-Thy1-THY010093B04.5

Sequence:


               
               GCAGTTCTCACTGAGACCCGTCACCCGGACTCTACGTGAGACCCACCGCCCGGACTCACC
ATGCGTGAATGCATCTCAGTCCATGTTGGGCAGGCAGGTGTCCAGATGGGCAATGCCTGC
TGGGAGCTCTACTGTCTGGAACATGGGATCCAGCCGGATGGGCAGATGCCCAGTGACAAG
ACCATTGGTGGAGGAGACGACTCCTTCACCACCTTCTTCTGTGAAACTGGTGCTGGAAAG
CATGTGCCCCGGGCAGTTTTTGTGGATTTGGAGCCCACCGTGATTGATGAGATCCGAAAT
GGCCCCTACCGGCAGCTCTTCCACCCAGAGCAGCTCATCACTGGGAAAGAGGATGCGGCT
AACAACTATGCCCGTGGTCACTACACCATCGGCAAGGAAATTATTGACCCGGTACTGGAC
CGGATCCGCAAGCTGTCTGATCAGTGCACAGGACTTCAGGGCTTCCTGGTGTTCCACAGC
TTTGGAGGCGGCACCGGCTCTGGCTTCACCTCGCTCCTGATGGAGAGGCTCTCTGTTGAC
TACGGCAAGAAATCCAAGCTCGAGTTCTCCATCTACCCTGCCCCGCAGGTGTCCACAGCC
GTGGTCGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCAGACTGT
GCCTTCATGGTGGACAACGAAGCCATTTACGACATCTGCCGCCGCAACCTGGACATCGAG
CGTCCCACCTACACCAACCTCAACCGCCTCATCAGCCAAATCGTCTCCTCCATCACAGCG
TCCCTGCGCTTTGACGGGGCCCTCAACGTGGACCTGACGGAGTTCCAGACCAACCTGGTG
CCCTACCCTCGCATCCACTTCCCGCTGGCCACCTATGCACCAGTCATCTCTGCAGAGAAG
GCCTACCACGAGCAGCTGTCGGTGGCAGAGATCACCAACGCCTGCTTCGAGCCTGCCAAC
CAGATGGTGAAGTGTGATCCCCGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGA
GGAGACGTGGTGCCCAAGGATGTCAATGCCGCCATCGCTGCCATCAAGACCAAGCGCAGT
ATCCAGTTTGTGGACTGGTGCCCCACGGGCTTCAAGGTTGGTATCAACTACCAGCCCCCC
ACCGTAGTGCCCGGGGGTGACCTGGCCAAGGTGCAGCGTGCCGTGTGCATGCTGAGCAAC
ACGACCGCCATCGCCGAGGCCTGGGCCCGCCTAGACCACAAGTTCGACCTGATGTATGCC
AAGAGGGCGTTTGTGCACTGGTACGTGGGCGAGGGCATGGAGGAGGGCGAGTTCTCTGAG
GCCCGGGAGGATATGGCTGCCCTGGAGAAGGATTATGAGGAGGTGGGTATCGACTCCTAT
GAGGACGAGGATGAGGGAGAAGAATAGAACAGCTGCCTGGAGCCCACTCACTATGTTTAT
TGCAAAAGCATTTCGAAATAAACAGCCTCCTTGCGCGGAAAAAAAAAACCTCTGTGAGTG
CTTAAGCTTCTGCTGCCGTCCCCTTTTGTGCCGCTGCTATTTCTGCTGCTGCTTCCGCTG
CTGCCCTGTTTGCTGCTCATGACTCTTTCCCCTTCCATGGCTGAAGGTGAGACCTGCCAA
GGGGTCCTTGCCAGGCCCAGGAAACATGATCCCATGTATGATCCTAGAGGCGCCCACGAT
AAGGGGGAAATGAGGACTGACTCCTGGACCTGTCTGTCCAGCCATGAGCTGTTAAAGGAT
ACGAGGCTTCACTTCCTTTCCAAGTAGGAGTTTAAGCCCAGCAGTTTCTGTATCTGCGAG
TTAGACTGCTACCCTATTCTTCCTGCTGCTCTGCATTCACTGGCTTTGGACGAGAGGCTT
GGCCCAGACACCTCTGTGTGTTATAAGGCCTTGGGAGTGGGGCTGCGCTGGCCCAGAGTT
CCTGGGCATGGAGCCTAGTCATAAGCTTGGGGGATGGGAGGGAACAAGGGCGATCTCCTA
GGGTTGTTTGTGTCACTGCACCTCCCAGCAGCTTTGCAAAACTGTCTGTCTTGCCGCTTT
GCCGGGGCCTAGGGCTGTGCCATTAAAAGTCAGGTTGTCTCCCGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTTCTCACTGAGACCCGTCACCCGGACTCTACGTGAGACCCACCGCCCGGACTCACC
ATGCGTGAATGCATCTCAGTCCATGTTGGGCAGGCAGGTGTCCAGATGGGCAATGCCTGC
TGGGAGCTCTACTGTCTGGAACATGGGATCCAGCCGGATGGGCAGATGCCCAGTGACAAG
ACCATTGGTGGAGGAGACGACTCCTTCACCACCTTCTTCTGTGAAACTGGTGCTGGAAAG
CATGTGCCCCGGGCAGTTTTTGTGGATTTGGAGCCCACCGTGATTGATGAGATCCGAAAT
GGCCCCTACCGGCAGCTCTTCCACCCAGAGCAGCTCATCACTGGGAAAGAGGATGCGGCT
AACAACTATGCCCGTGGTCACTACACCATCGGCAAGGAAATTATTGACCCGGTACTGGAC
CGGATCCGCAAGCTGTCTGATCAGTGCACAGGACTTCAGGGCTTCCTGGTGTTCCACAGC
TTTGGAGGCGGCACCGGCTCTGGCTTCACCTCGCTCCTGATGGAGAGGCTCTCTGTTGAC
TACGGCAAGAAATCCAAGCTCGAGTTCTCCATCTACCCTGCCCCGCAGGTGTCCACAGCC
GTGGTCGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCAGACTGT
GCCTTCATGGTGGACAACGAAGCCATTTACGACATCTGCCGCCGCAACCTGGACATCGAG
CGTCCCACCTACACCAACCTCAACCGCCTCATCAGCCAAATCGTCTCCTCCATCACAGCG
TCCCTGCGCTTTGACGGGGCCCTCAACGTGGACCTGACGGAGTTCCAGACCAACCTGGTG
CCCTACCCTCGCATCCACTTCCCGCTGGCCACCTATGCACCAGTCATCTCTGCAGAGAAG
GCCTACCACGAGCAGCTGTCGGTGGCAGAGATCACCAACGCCTGCTTCGAGCCTGCCAAC
CAGATGGTGAAGTGTGATCCCCGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGA
GGAGACGTGGTGCCCAAGGATGTCAATGCCGCCATCGCTGCCATCAAGACCAAGCGCAGT
ATCCAGTTTGTGGACTGGTGCCCCACGGGCTTCAAGGTTGGTATCAACTACCAGCCCCCC
ACCGTAGTGCCCGGGGGTGACCTGGCCAAGGTGCAGCGTGCCGTGTGCATGCTGAGCAAC
ACGACCGCCATCGCCGAGGCCTGGGCCCGCCTAGACCACAAGTTCGACCTGATGTATGCC
AAGAGGGCGTTTGTGCACTGGTACGTGGGCGAGGGCATGGAGGAGGGCGAGTTCTCTGAG
GCCCGGGAGGATATGGCTGCCCTGGAGAAGGATTATGAGGAGGTGGGTATCGACTCCTAT
GAGGACGAGGATGAGGGAGAAGAATAGAACAGCTGCCTGGAGCCCACTCACTATGTTTAT
TGCAAAAGCATTTCGAAATAAACAGCCTCCTTGCGCGGAAAAAAAAAACCTCTGTGAGTG
CTTAAGCTTCTGCTGCCGTCCCCTTTTGTGCCGCTGCTATTTCTGCTGCTGCTTCCGCTG
CTGCCCTGTTTGCTGCTCATGACTCTTTCCCCTTCCATGGCTGAAGGTGAGACCTGCCAA
GGGGTCCTTGCCAGGCCCAGGAAACATGATCCCATGTATGATCCTAGAGGCGCCCACGAT
AAGGGGGAAATGAGGACTGACTCCTGGACCTGTCTGTCCAGCCATGAGCTGTTAAAGGAT
ACGAGGCTTCACTTCCTTTCCAAGTAGGAGTTTAAGCCCAGCAGTTTCTGTATCTGCGAG
TTAGACTGCTACCCTATTCTTCCTGCTGCTCTGCATTCACTGGCTTTGGACGAGAGGCTT
GGCCCAGACACCTCTGTGTGTTATAAGGCCTTGGGAGTGGGGCTGCGCTGGCCCAGAGTT
CCTGGGCATGGAGCCTAGTCATAAGCTTGGGGGATGGGAGGGAACAAGGGCGATCTCCTA
GGGTTGTTTGTGTCACTGCACCTCCCAGCAGCTTTGCAAAACTGTCTGTCTTGCCGCTTT
GCCGGGGCCTAGGGCTGTGCCATTAAAAGTCAGGTTGTCTCCCGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5XIF6_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5XIF6_RAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               61-193, + strand, RNAz p=0.947799
               

               
               563-762, - strand, RNAz p=0.838292
               

               
               843-1162, - strand, RNAz p=0.991516

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-193, + strand, RNAz p=0.947799
               

               
               563-762, - strand, RNAz p=0.838292
               

               
               843-1162, - strand, RNAz p=0.991516

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-1407, gnl|bosTau2|chr10 (46593786-46592449)
               

               
               61-1407, gnl|Hg17|chr12 (47869029-47865069)
               

               
               61-1407, gnl|Mm7|chr15 (98938714-98935302)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-1407, gnl|bosTau2|chr10 (46593786-46592449)
               

               
               61-1407, gnl|Hg17|chr12 (47869029-47865069)
               

               
               61-1407, gnl|Mm7|chr15 (98938714-98935302)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               hyp (0.714184)
               

               
               med (0.697512)
               

               
               fcc (0.593354)
               

               
               nep (0.551775)
               

               
               ssp (0.406559)
               

               
               ton (0.351)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               ldo (0.291008)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.714184)
               

               
               med (0.697512)
               

               
               fcc (0.593354)
               

               
               nep (0.551775)
               

               
               ssp (0.406559)
               

               
               ton (0.351)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               ldo (0.291008)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	61-193, + strand, RNAz p=0.947799
	563-762, - strand, RNAz p=0.838292
	843-1162, - strand, RNAz p=0.991516

	61-1407, gnl\|bosTau2\|chr10 (46593786-46592449)
	61-1407, gnl\|Hg17\|chr12 (47869029-47865069)
	61-1407, gnl\|Mm7\|chr15 (98938714-98935302)

	hyp (0.714184)
	med (0.697512)
	fcc (0.593354)
	nep (0.551775)
	ssp (0.406559)
	ton (0.351)
	fhi (0.339155)
	nco (0.323468)
	ldo (0.291008)
	cbl (0.229595)
	nms (0.213858)
	mas (0.210305)
	col (0.195008)
	fty (0.17584)
	ill (0.175593)
	mcp (0.170648)
	cje (0.165235)
	lnt (0.142308)
	nca (0.136874)
	cbr (0.127975)
	ese (0.126502)
	cty (0.10408)
	nbm (0.0993246)