Non-Coding RNA Search

Ss1.1-Thy1-THY010093C05.5

Sequence:


               
               CGGCCTCCACGCTCTGGCGCAGGGTTACCTCATTCTCATACTTCATCCTGAAGTCATCAG
CTGCCAGTCTGGCATTGTCGACTTGAATCAGGATATTGGCATTATCGACTGTTAGATTGA
TGATCTGATTTTTAAGATCTTCAATGATTTTGTAGTATTTGCTGTAATCACGAGGCTCCC
GCCGGCCTACGTTGCCATGCTTGTCGTACCACTCCTTGATCTTGACTTCTAGCTCATAGT
TGGAGTCTTCCAGAGCCCGAACTTTGTCCAAGTAGGAAGCCAGGCGGTCATTCAGATTCT
GCATGGTGACTTTTTCATTTCCGTTGAGAAGGCCACCATCTCCAAACCCACCAAAGCCGC
CGCCACCGAAGCCGCCGCCGCCACCGAAGCTGCCGCCACCGAAGCCGCCGCCACCGAAGC
CGCCGCCGCCACCGAAGCTGCCGCCACCGAAGCCGCCGCCACCGAAGCTACTGCCGCCAT
AGCCCCCTCCGAAGCTGCCTCCTCCGCAGCTACTGAAGCTGCTGCTTCCATAGCCTCCAC
CAAAGCTCCCTCCACCGAAACCTCCTAATCCTCCTCCGTAGCCACCGGAGGAGCCCCCAA
AGCAGCCTCCACCAGAGCTCCCACGGCTGAAAGAGCCACCACTGAAGCCCCCTGAGCTAA
GTCCTCCGCCGCCGATGGAGCATTTGCTGCTCGAAATTCTTAAGGACGACACTCCTCCTC
CTCCCCCTCCTCCTCCTCCACTGCGGGAGGAAGAGTACTGCTTGCTGGAGCTGCGTTGAG
TAGACATGGTGATGCTGTGTCACCCAGGGACTGCCTGCTACCAAGGACAGTGACAAGCCT
TTATATACTGAGAGGGTGTGTCCCACGTGTGTTGGAGTTTTGCTTACTTGCTTGGTTTTC
TTTTTGCCAATTTTGCATCTTTGGCTTACGATTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCTCCACGCTCTGGCGCAGGGTTACCTCATTCTCATACTTCATCCTGAAGTCATCAG
CTGCCAGTCTGGCATTGTCGACTTGAATCAGGATATTGGCATTATCGACTGTTAGATTGA
TGATCTGATTTTTAAGATCTTCAATGATTTTGTAGTATTTGCTGTAATCACGAGGCTCCC
GCCGGCCTACGTTGCCATGCTTGTCGTACCACTCCTTGATCTTGACTTCTAGCTCATAGT
TGGAGTCTTCCAGAGCCCGAACTTTGTCCAAGTAGGAAGCCAGGCGGTCATTCAGATTCT
GCATGGTGACTTTTTCATTTCCGTTGAGAAGGCCACCATCTCCAAACCCACCAAAGCCGC
CGCCACCGAAGCCGCCGCCGCCACCGAAGCTGCCGCCACCGAAGCCGCCGCCACCGAAGC
CGCCGCCGCCACCGAAGCTGCCGCCACCGAAGCCGCCGCCACCGAAGCTACTGCCGCCAT
AGCCCCCTCCGAAGCTGCCTCCTCCGCAGCTACTGAAGCTGCTGCTTCCATAGCCTCCAC
CAAAGCTCCCTCCACCGAAACCTCCTAATCCTCCTCCGTAGCCACCGGAGGAGCCCCCAA
AGCAGCCTCCACCAGAGCTCCCACGGCTGAAAGAGCCACCACTGAAGCCCCCTGAGCTAA
GTCCTCCGCCGCCGATGGAGCATTTGCTGCTCGAAATTCTTAAGGACGACACTCCTCCTC
CTCCCCCTCCTCCTCCTCCACTGCGGGAGGAAGAGTACTGCTTGCTGGAGCTGCGTTGAG
TAGACATGGTGATGCTGTGTCACCCAGGGACTGCCTGCTACCAAGGACAGTGACAAGCCT
TTATATACTGAGAGGGTGTGTCCCACGTGTGTTGGAGTTTTGCTTACTTGCTTGGTTTTC
TTTTTGCCAATTTTGCATCTTTGGCTTACGATTGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9JKB4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9JKB4_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               681-782, - strand, RNAz p=0.606356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               681-782, - strand, RNAz p=0.606356

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               426-936, gnl|bosTau2|chr19 (33814942-33814459)
               

               
               426-936, gnl|Hg17|chr17 (36231975-36232510)
               

               
               426-936, gnl|Mm7|chr11 (99498022-99498519)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               426-936, gnl|bosTau2|chr19 (33814942-33814459)
               

               
               426-936, gnl|Hg17|chr17 (36231975-36232510)
               

               
               426-936, gnl|Mm7|chr11 (99498022-99498519)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.490256)
               

               
               nep (0.36785)
               

               
               eru (0.240096)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.490256)
               

               
               nep (0.36785)
               

               
               eru (0.240096)

	426-936, gnl\|bosTau2\|chr19 (33814942-33814459)
	426-936, gnl\|Hg17\|chr17 (36231975-36232510)
	426-936, gnl\|Mm7\|chr11 (99498022-99498519)