Non-Coding RNA Search

Ss1.1-Thy1-THY010093D09.5

Sequence:


               
               GTGACTCTTTGTCACCTGCTCTTTCCACTAATCTCAATATTTTGAAGGAAAACAAAAAAC
ACAGCCCCTCTTGGCAAGGAAAGACCTCTACTCATGGGTGGATAAAGGCACTGCCAGGAT
AATGTGGGGGCCGAAAATAAAAATACCAGCGTTTTCCCCCGGGACCCCCGGCCCTGCTAA
TGCAGACACGGTTCTGTTCCCTGCTGTGTCCCTTCAGGCGGCAGAGAAGGCCGGCATGTC
CACAGGACAGGCCCGAGGACTCCTGGAAAGGGTCTCAACACCAGAGGTGAAGAACCAGCT
CAAGGAGACCACTGAGGCGGCCTGCAAATATGGGGTGAGCAGCTCCTTGCTGAGTCCCCA
TCCCCAGTGCTGAGACAGAGTCTCGGCTCGGTCCCCACGCCCCTGTCCAAAAGCTGCTAC
CCAACGTGAGTCCTCTGTCTTTCCCCGACCACCCTCCTCCTCGCGCATCCTTTTCCTGAG
CCCCAGAAAGGAAGGGAAGGAGGAGGATGGCAAGGGAAAGAGAAAATGCTCCTTAGAGCC
CTGGAGCCTCTTATCAGACACCTCTGGCTGTTTCGTATCTACGACCTCAGACCAGTAATG
ACTTGCCGCCTTCAGCCGCACCCCAATAAACACCTGCTCCAGGAGTTCCCATCATGGTGC
AGCGGAAACAAATCCGACTAGGAACCATGAGGTTGTGGGTCTGATCCCTGGCCTCGTTCA
GTGGGTTAAGGATCTGGCGTTGCTGTGAGCTGTGGTGTACGTTGCAGACACTGTTCGGAT
CCTGCGTTGCTGTGGCTGTGGCTCAGGCTGGCAGCTACAGCTCTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACTCTTTGTCACCTGCTCTTTCCACTAATCTCAATATTTTGAAGGAAAACAAAAAAC
ACAGCCCCTCTTGGCAAGGAAAGACCTCTACTCATGGGTGGATAAAGGCACTGCCAGGAT
AATGTGGGGGCCGAAAATAAAAATACCAGCGTTTTCCCCCGGGACCCCCGGCCCTGCTAA
TGCAGACACGGTTCTGTTCCCTGCTGTGTCCCTTCAGGCGGCAGAGAAGGCCGGCATGTC
CACAGGACAGGCCCGAGGACTCCTGGAAAGGGTCTCAACACCAGAGGTGAAGAACCAGCT
CAAGGAGACCACTGAGGCGGCCTGCAAATATGGGGTGAGCAGCTCCTTGCTGAGTCCCCA
TCCCCAGTGCTGAGACAGAGTCTCGGCTCGGTCCCCACGCCCCTGTCCAAAAGCTGCTAC
CCAACGTGAGTCCTCTGTCTTTCCCCGACCACCCTCCTCCTCGCGCATCCTTTTCCTGAG
CCCCAGAAAGGAAGGGAAGGAGGAGGATGGCAAGGGAAAGAGAAAATGCTCCTTAGAGCC
CTGGAGCCTCTTATCAGACACCTCTGGCTGTTTCGTATCTACGACCTCAGACCAGTAATG
ACTTGCCGCCTTCAGCCGCACCCCAATAAACACCTGCTCCAGGAGTTCCCATCATGGTGC
AGCGGAAACAAATCCGACTAGGAACCATGAGGTTGTGGGTCTGATCCCTGGCCTCGTTCA
GTGGGTTAAGGATCTGGCGTTGCTGTGAGCTGTGGTGTACGTTGCAGACACTGTTCGGAT
CCTGCGTTGCTGTGGCTGTGGCTCAGGCTGGCAGCTACAGCTCTGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-380, - strand, RNAz p=0.585782

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-380, - strand, RNAz p=0.585782

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-565, gnl|bosTau2|chr4 (58341122-58341677)
               

               
               2-565, gnl|Hg17|chr7 (142481330-142481934)
               

               
               2-565, gnl|Mm7|chr6 (42192141-42192742)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-565, gnl|bosTau2|chr4 (58341122-58341677)
               

               
               2-565, gnl|Hg17|chr7 (142481330-142481934)
               

               
               2-565, gnl|Mm7|chr6 (42192141-42192742)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.42061)
               

               
               cje (0.165235)
               

               
               pty (0.142714)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               cje (0.165235)
               

               
               pty (0.142714)

	2-565, gnl\|bosTau2\|chr4 (58341122-58341677)
	2-565, gnl\|Hg17\|chr7 (142481330-142481934)
	2-565, gnl\|Mm7\|chr6 (42192141-42192742)