Ss1.1-Thy1-THY010094F07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTAGCTGCCAGCCCTGGCCCATCATGTAGCTGCAGCACAGCCTTCCCTAACGTTGCA ACTGGGGGAAAAATCACTTTCCAGTCTGTTTTGCAAGGTGTGCATTTCCATCTTGATTCC CTGAAAGTCCATCTACTGCATCGGTCAAGAGAAACTCCACTTGCATGAAGATTGCACGCC TGCAGCTTGCATCTTTGTTGCAAAACTAGCTACAGAAGAGAAGCAAGGCAAAGTCTTTTG TGCTCCCCTCCCCCATCAAAGGAAAGGGGAAAATGTCTCAGTCGAAAGGCAAGAAGCGAA ACCCTGGCCTTAAAATCCCAAAAGAAGCATTTGAACAACCTCAGACCAGTTCCACGCCAC CTCGAGACTTAGACTCCAAAGCTTGCATTTCTATTGGAAATCAGAACTTTGAGGTGAAGG CGGATGACCTGGAGCCCATAGTGGAACTGGGACGAGGTGCGTACGGGGTGGTGGAGAAGA TGCGACACGTGCCCAGCGGGCAGATCATGGCGGTGAAGCGGATCCGGGCCACAGTAAACA GCCAGGAGCAGAAAAGGCTACTGATGGATCTGGATATTTCCATGAGGACCGTGGACTGTC CTTTTACGGTCACCTTCTACGGCGCACTCTTCCGTGAGGGTGATGTCTGGATCTGCATGG AGCTCATGGATACGTCCCTAGATAAATTCTACAAACAAGTGATTGATAAAGGCCAGACGA TTCCAGAGGACATCTTAGGAAAAATAGCAGTTTCTATTGTAAAAGCGTTAGAACATTTAC ACAGTAAGCTCTCTGTCATTCATCGAGACGTCAAGCCTTCCAACGTCCTGATCAACACTC TGGGCCAAGTGAAGATGTGCGACTTCGGAATCAGTGGCTACCTTGTCGACTCCGTCGCCA AAACTATTGATGCAGGATGCAAACCGTACATGGCGCCTGAGAGAATAAACCCAGAGCTCA ACCAGAAGGGATACAGTGTGAAGTCCGACATTTGGAGTCTGGGCATCACCATGATCGAGT TGGCCATCCTTCGGTTTCCCTACGACTCGTGGGGAACTCCTTTTCAGCAGCTCAAACAGG TGGTGGAGGAGCCATCGCCACAGCTCCCCGCAGACAAGTTCTCCGAAGAGTTTGTTGACT TTACCTCACAGTGCTTGAAGAAGAATTCCAAAGAAAGGCCAACATATCCAGAGCTTATGC AACATCCGTTTTTCACCTTACATGAATCCAAAGCAACAGACGTGGCATCTTTTGTAAAAT CAATTCTCGGAGACTAAAAACAATGGACTCAATCGGTTGACCCTCCTGTGAATTGGTGGG TTTACAGGGTGAAGCAAGTTCACTGAAGCGCCAATAGAAACTCATCTTTGAGATAATTCA ACCCTGCCTCTCAGAAGGTTTTTTTCTCCCCATTTTCTCTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTAGCTGCCAGCCCTGGCCCATCATGTAGCTGCAGCACAGCCTTCCCTAACGTTGCA ACTGGGGGAAAAATCACTTTCCAGTCTGTTTTGCAAGGTGTGCATTTCCATCTTGATTCC CTGAAAGTCCATCTACTGCATCGGTCAAGAGAAACTCCACTTGCATGAAGATTGCACGCC TGCAGCTTGCATCTTTGTTGCAAAACTAGCTACAGAAGAGAAGCAAGGCAAAGTCTTTTG TGCTCCCCTCCCCCATCAAAGGAAAGGGGAAAATGTCTCAGTCGAAAGGCAAGAAGCGAA ACCCTGGCCTTAAAATCCCAAAAGAAGCATTTGAACAACCTCAGACCAGTTCCACGCCAC CTCGAGACTTAGACTCCAAAGCTTGCATTTCTATTGGAAATCAGAACTTTGAGGTGAAGG CGGATGACCTGGAGCCCATAGTGGAACTGGGACGAGGTGCGTACGGGGTGGTGGAGAAGA TGCGACACGTGCCCAGCGGGCAGATCATGGCGGTGAAGCGGATCCGGGCCACAGTAAACA GCCAGGAGCAGAAAAGGCTACTGATGGATCTGGATATTTCCATGAGGACCGTGGACTGTC CTTTTACGGTCACCTTCTACGGCGCACTCTTCCGTGAGGGTGATGTCTGGATCTGCATGG AGCTCATGGATACGTCCCTAGATAAATTCTACAAACAAGTGATTGATAAAGGCCAGACGA TTCCAGAGGACATCTTAGGAAAAATAGCAGTTTCTATTGTAAAAGCGTTAGAACATTTAC ACAGTAAGCTCTCTGTCATTCATCGAGACGTCAAGCCTTCCAACGTCCTGATCAACACTC TGGGCCAAGTGAAGATGTGCGACTTCGGAATCAGTGGCTACCTTGTCGACTCCGTCGCCA AAACTATTGATGCAGGATGCAAACCGTACATGGCGCCTGAGAGAATAAACCCAGAGCTCA ACCAGAAGGGATACAGTGTGAAGTCCGACATTTGGAGTCTGGGCATCACCATGATCGAGT TGGCCATCCTTCGGTTTCCCTACGACTCGTGGGGAACTCCTTTTCAGCAGCTCAAACAGG TGGTGGAGGAGCCATCGCCACAGCTCCCCGCAGACAAGTTCTCCGAAGAGTTTGTTGACT TTACCTCACAGTGCTTGAAGAAGAATTCCAAAGAAAGGCCAACATATCCAGAGCTTATGC AACATCCGTTTTTCACCTTACATGAATCCAAAGCAACAGACGTGGCATCTTTTGTAAAAT CAATTCTCGGAGACTAAAAACAATGGACTCAATCGGTTGACCCTCCTGTGAATTGGTGGG TTTACAGGGTGAAGCAAGTTCACTGAAGCGCCAATAGAAACTCATCTTTGAGATAATTCA ACCCTGCCTCTCAGAAGGTTTTTTTCTCCCCATTTTCTCTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 160-294, - strand, RNAz p=0.933781 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-294, - strand, RNAz p=0.933781 |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 1-294, gnl|bosTau2|chr19 (55747150-55746857) | |
| 1-294, gnl|Hg17|chr17 (64922449-64922742) | |
| 1-294, gnl|Mm7|chr11 (110508179-110508472) | |
| 402-518, gnl|bosTau2|chr19 (55664679-55664563) | |
| 402-518, gnl|canFam2|chr9 (19058790-19058920) | |
| 402-518, gnl|danRer3|chr12 (33079487-33079621) | |
| 402-518, gnl|dasNov1|scaffold_160894 (246-376) | |
| 402-518, gnl|echTel1|scaffold_309174 (49843-49717) | |
| 402-518, gnl|fr1|chrUn (216012528-216012409) | |
| 402-518, gnl|galGal2|chr18 (7786459-7786593) | |
| 402-518, gnl|hg17|chr17 (65025211-65025341) | |
| 402-518, gnl|Hg17|chr17 (65025233-65025349) | |
| 402-518, gnl|loxAfr1|scaffold_843 (112567-112697) | |
| 402-518, gnl|mm7|chr11 (110599778-110599908) | |
| 402-518, gnl|Mm7|chr11 (110599800-110599916) | |
| 402-518, gnl|monDom2|scaffold_18 (23175343-23175472) | |
| 402-518, gnl|oryCun1|scaffold_188533 (7303-7168) | |
| 402-518, gnl|panTro1|chr19 (68355599-68355729) | |
| 402-518, gnl|rheMac2|chr16 (64772361-64772491) | |
| 402-518, gnl|rn3|chr10 (99959119-99959249) | |
| 402-518, gnl|tetNig1|chr3 (10480318-10480190) | |
| 402-518, gnl|xenTro1|scaffold_147 (26051-26176) | |
| 637-755, gnl|bosTau2|chr19 (55661621-55661503) | |
| 637-755, gnl|canFam2|chr9 (19061907-19062050) | |
| 637-755, gnl|danRer3|chr12 (33083164-33083290) | |
| 637-755, gnl|dasNov1|scaffold_176494 (3884-4011) | |
| 637-755, gnl|echTel1|scaffold_309174 (43959-43820) | |
| 637-755, gnl|fr1|chrUn (216012095-216011970) | |
| 637-755, gnl|hg17|chr17 (65027988-65028131) | |
| 637-755, gnl|Hg17|chr17 (65028004-65028122) | |
| 637-755, gnl|loxAfr1|scaffold_843 (115914-116057) | |
| 637-755, gnl|mm7|chr11 (110601919-110602062) | |
| 637-755, gnl|Mm7|chr11 (110601935-110602053) | |
| 637-755, gnl|monDom2|scaffold_18 (23179644-23179775) | |
| 637-755, gnl|oryCun1|scaffold_188533 (1323-1180) | |
| 637-755, gnl|panTro1|chr19 (68358374-68358517) | |
| 637-755, gnl|rheMac2|chr16 (64775166-64775309) | |
| 637-755, gnl|rn3|chr10 (99961446-99961581) | |
| 637-755, gnl|tetNig1|chr3 (10479229-10479114) | |
| 637-755, gnl|xenTro1|scaffold_147 (30035-30177) | |
| 806-941, gnl|bosTau2|chr19 (55657361-55657227) | |
| 806-941, gnl|canFam2|chr9 (19064821-19064988) | |
| 806-941, gnl|danRer3|chr12 (33084112-33084285) | |
| 806-941, gnl|dasNov1|scaffold_294850 (841-675) | |
| 806-941, gnl|echTel1|scaffold_279589 (37141-37314) | |
| 806-941, gnl|fr1|chrUn (216011412-216011262) | |
| 806-941, gnl|galGal2|chr18 (7790525-7790691) | |
| 806-941, gnl|hg17|chr17 (65031236-65031402) | |
| 806-941, gnl|Hg17|chr17 (65031248-65031382) | |
| 806-941, gnl|loxAfr1|scaffold_843 (119679-119838) | |
| 806-941, gnl|mm7|chr11 (110605366-110605540) | |
| 806-941, gnl|Mm7|chr11 (110605378-110605512) | |
| 806-941, gnl|monDom2|scaffold_18 (23182623-23182790) | |
| 806-941, gnl|oryCun1|scaffold_23600 (415-287) | |
| 806-941, gnl|panTro1|chr19 (68361687-68361853) | |
| 806-941, gnl|rheMac2|chr16 (64778599-64778765) | |
| 806-941, gnl|rn3|chr10 (99967261-99967435) | |
| 806-941, gnl|tetNig1|chr3 (10478476-10478333) | |
| 806-941, gnl|xenTro1|scaffold_147 (33488-33655) | |
| 1013-1153, gnl|bosTau2|chr19 (55654278-55654138) | |
| 1013-1153, gnl|canFam2|chr9 (19067493-19067667) | |
| 1013-1153, gnl|danRer3|chr12 (33089378-33089532) | |
| 1013-1153, gnl|dasNov1|scaffold_4977 (18091-17916) | |
| 1013-1153, gnl|echTel1|scaffold_279589 (40291-40466) | |
| 1013-1153, gnl|fr1|chrUn (216010965-216010803) | |
| 1013-1153, gnl|galGal2|chr18 (7792280-7792453) | |
| 1013-1153, gnl|hg17|chr17 (65034292-65034466) | |
| 1013-1153, gnl|Hg17|chr17 (65034305-65034445) | |
| 1013-1153, gnl|loxAfr1|scaffold_843 (122907-123082) | |
| 1013-1153, gnl|mm7|chr11 (110608413-110608583) | |
| 1013-1153, gnl|Mm7|chr11 (110608423-110608563) | |
| 1013-1153, gnl|monDom2|scaffold_18 (23185295-23185464) | |
| 1013-1153, gnl|oryCun1|scaffold_210825 (58336-58167) | |
| 1013-1153, gnl|panTro1|chr19 (68364737-68364911) | |
| 1013-1153, gnl|rheMac2|chr16 (64781639-64781813) | |
| 1013-1153, gnl|rn3|chr10 (99970265-99970436) | |
| 1013-1153, gnl|tetNig1|chr3 (10478033-10477875) | |
| 1013-1153, gnl|xenTro1|scaffold_147 (34417-34574) | |
| 1199-1425, gnl|bosTau2|chr19 (55641654-55641431) | |
| 1199-1425, gnl|Hg17|chr17 (65049411-65049637) | |
| 1199-1425, gnl|Mm7|chr11 (110621829-110622053) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-294, gnl|bosTau2|chr19 (55747150-55746857) | |
| 1-294, gnl|Hg17|chr17 (64922449-64922742) | |
| 1-294, gnl|Mm7|chr11 (110508179-110508472) | |
| 402-518, gnl|bosTau2|chr19 (55664679-55664563) | |
| 402-518, gnl|canFam2|chr9 (19058790-19058920) | |
| 402-518, gnl|danRer3|chr12 (33079487-33079621) | |
| 402-518, gnl|dasNov1|scaffold_160894 (246-376) | |
| 402-518, gnl|echTel1|scaffold_309174 (49843-49717) | |
| 402-518, gnl|fr1|chrUn (216012528-216012409) | |
| 402-518, gnl|galGal2|chr18 (7786459-7786593) | |
| 402-518, gnl|hg17|chr17 (65025211-65025341) | |
| 402-518, gnl|Hg17|chr17 (65025233-65025349) | |
| 402-518, gnl|loxAfr1|scaffold_843 (112567-112697) | |
| 402-518, gnl|mm7|chr11 (110599778-110599908) | |
| 402-518, gnl|Mm7|chr11 (110599800-110599916) | |
| 402-518, gnl|monDom2|scaffold_18 (23175343-23175472) | |
| 402-518, gnl|oryCun1|scaffold_188533 (7303-7168) | |
| 402-518, gnl|panTro1|chr19 (68355599-68355729) | |
| 402-518, gnl|rheMac2|chr16 (64772361-64772491) | |
| 402-518, gnl|rn3|chr10 (99959119-99959249) | |
| 402-518, gnl|tetNig1|chr3 (10480318-10480190) | |
| 402-518, gnl|xenTro1|scaffold_147 (26051-26176) | |
| 637-755, gnl|bosTau2|chr19 (55661621-55661503) | |
| 637-755, gnl|canFam2|chr9 (19061907-19062050) | |
| 637-755, gnl|danRer3|chr12 (33083164-33083290) | |
| 637-755, gnl|dasNov1|scaffold_176494 (3884-4011) | |
| 637-755, gnl|echTel1|scaffold_309174 (43959-43820) | |
| 637-755, gnl|fr1|chrUn (216012095-216011970) | |
| 637-755, gnl|hg17|chr17 (65027988-65028131) | |
| 637-755, gnl|Hg17|chr17 (65028004-65028122) | |
| 637-755, gnl|loxAfr1|scaffold_843 (115914-116057) | |
| 637-755, gnl|mm7|chr11 (110601919-110602062) | |
| 637-755, gnl|Mm7|chr11 (110601935-110602053) | |
| 637-755, gnl|monDom2|scaffold_18 (23179644-23179775) | |
| 637-755, gnl|oryCun1|scaffold_188533 (1323-1180) | |
| 637-755, gnl|panTro1|chr19 (68358374-68358517) | |
| 637-755, gnl|rheMac2|chr16 (64775166-64775309) | |
| 637-755, gnl|rn3|chr10 (99961446-99961581) | |
| 637-755, gnl|tetNig1|chr3 (10479229-10479114) | |
| 637-755, gnl|xenTro1|scaffold_147 (30035-30177) | |
| 806-941, gnl|bosTau2|chr19 (55657361-55657227) | |
| 806-941, gnl|canFam2|chr9 (19064821-19064988) | |
| 806-941, gnl|danRer3|chr12 (33084112-33084285) | |
| 806-941, gnl|dasNov1|scaffold_294850 (841-675) | |
| 806-941, gnl|echTel1|scaffold_279589 (37141-37314) | |
| 806-941, gnl|fr1|chrUn (216011412-216011262) | |
| 806-941, gnl|galGal2|chr18 (7790525-7790691) | |
| 806-941, gnl|hg17|chr17 (65031236-65031402) | |
| 806-941, gnl|Hg17|chr17 (65031248-65031382) | |
| 806-941, gnl|loxAfr1|scaffold_843 (119679-119838) | |
| 806-941, gnl|mm7|chr11 (110605366-110605540) | |
| 806-941, gnl|Mm7|chr11 (110605378-110605512) | |
| 806-941, gnl|monDom2|scaffold_18 (23182623-23182790) | |
| 806-941, gnl|oryCun1|scaffold_23600 (415-287) | |
| 806-941, gnl|panTro1|chr19 (68361687-68361853) | |
| 806-941, gnl|rheMac2|chr16 (64778599-64778765) | |
| 806-941, gnl|rn3|chr10 (99967261-99967435) | |
| 806-941, gnl|tetNig1|chr3 (10478476-10478333) | |
| 806-941, gnl|xenTro1|scaffold_147 (33488-33655) | |
| 1013-1153, gnl|bosTau2|chr19 (55654278-55654138) | |
| 1013-1153, gnl|canFam2|chr9 (19067493-19067667) | |
| 1013-1153, gnl|danRer3|chr12 (33089378-33089532) | |
| 1013-1153, gnl|dasNov1|scaffold_4977 (18091-17916) | |
| 1013-1153, gnl|echTel1|scaffold_279589 (40291-40466) | |
| 1013-1153, gnl|fr1|chrUn (216010965-216010803) | |
| 1013-1153, gnl|galGal2|chr18 (7792280-7792453) | |
| 1013-1153, gnl|hg17|chr17 (65034292-65034466) | |
| 1013-1153, gnl|Hg17|chr17 (65034305-65034445) | |
| 1013-1153, gnl|loxAfr1|scaffold_843 (122907-123082) | |
| 1013-1153, gnl|mm7|chr11 (110608413-110608583) | |
| 1013-1153, gnl|Mm7|chr11 (110608423-110608563) | |
| 1013-1153, gnl|monDom2|scaffold_18 (23185295-23185464) | |
| 1013-1153, gnl|oryCun1|scaffold_210825 (58336-58167) | |
| 1013-1153, gnl|panTro1|chr19 (68364737-68364911) | |
| 1013-1153, gnl|rheMac2|chr16 (64781639-64781813) | |
| 1013-1153, gnl|rn3|chr10 (99970265-99970436) | |
| 1013-1153, gnl|tetNig1|chr3 (10478033-10477875) | |
| 1013-1153, gnl|xenTro1|scaffold_147 (34417-34574) | |
| 1199-1425, gnl|bosTau2|chr19 (55641654-55641431) | |
| 1199-1425, gnl|Hg17|chr17 (65049411-65049637) | |
| 1199-1425, gnl|Mm7|chr11 (110621829-110622053) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |