Non-Coding RNA Search

Ss1.1-Thy1-THY010095A09.5

Sequence:


               
               GTGCATCACCAGCTGACACCTTAAAGCTTTGCTGGTTGTAATCATTTGTCCTGCGGATAC
AATCCATTAAAAAGGCGTTCGCTGCCTTTTTTCCTAAAGTGTCCAAAACTTTCCATTTAA
AACAAGATCAAATAGTGCTGGGTGTTGGTTTTTTCCTTTCCCTGTTTAATTTTTCTTTGG
CAGTTGATGTTTTGTGTCCTATGAAACTTGTCATCGTGCCCCCAATCTTGGTGAACGTGG
AGGGACTAGCGTTCATTCTTGAGAGACACAAAGCACTTGGTTAGCGTGGGAGAGCAAGAA
AGACTGATGGGGAGTTCCCATCGTGGCGCAGTGGTTAACGAATCCAACTAGGAACCATGA
GGTTGTGGGTTCAATCCCCGGCCTTGCTCAGTGGGTTAAGGATCCGGAGTTGCAAACAGT
TGTGAGCTGCGATGTAGGTCGAAGATGAGGCTCAGATCCTGCATTGTTGTGGCTGTGTGT
GTGGCTACAGCTCCAATTGGACCCCTAGCCTGGGAACCTCCATATGCCGCGGGAGTGGCT
CAAGGAAAAAGGCAAAAAGAAAGAAAGAAAGAAAGACTGATGGATATGCTTTTATACAGT
TGGATTTGTCTGCCTGGCAATTTTTAATTCAGGGCAGCCTTCCTCTCGTGTCATGTAGGG
GCCATAGAGATGCTGTGCGTGGTGAGTGGTGGGTGGTAGGGTCAAGCGCGAAGCCTCGGG
GGCCTCAGCCGTGCAGTGGAGGCCGAGTTTCTCAAGCCTGTCTCTTAGCCTGTGATGGAG
AAAGACCGTGGGTCTTACATCCTCTGAAATGCTCAACCTAAAGCCTAGAAAAACACTCTT
AGAAATGAAGGAAGCAGTCCAGTCACTTCTGCTGGAGCATGAGAATGTGAGAAAATAGAA
TGTGTACATGTATGTGTGACTGGGGCACCATGCTGTGCAGCAGAAAAAAATTGTATTGGG
GAAAGAACGAGAGAAAGAAAGAGGAAAGGAAAGAAAGAAAGAAATGAAGCAAATTCAGCT
GCTCAACACAGGGAGCAAGAAATGAGAGTTGGTGCGTGGGGGCCCTGCCTCCGGTTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCATCACCAGCTGACACCTTAAAGCTTTGCTGGTTGTAATCATTTGTCCTGCGGATAC
AATCCATTAAAAAGGCGTTCGCTGCCTTTTTTCCTAAAGTGTCCAAAACTTTCCATTTAA
AACAAGATCAAATAGTGCTGGGTGTTGGTTTTTTCCTTTCCCTGTTTAATTTTTCTTTGG
CAGTTGATGTTTTGTGTCCTATGAAACTTGTCATCGTGCCCCCAATCTTGGTGAACGTGG
AGGGACTAGCGTTCATTCTTGAGAGACACAAAGCACTTGGTTAGCGTGGGAGAGCAAGAA
AGACTGATGGGGAGTTCCCATCGTGGCGCAGTGGTTAACGAATCCAACTAGGAACCATGA
GGTTGTGGGTTCAATCCCCGGCCTTGCTCAGTGGGTTAAGGATCCGGAGTTGCAAACAGT
TGTGAGCTGCGATGTAGGTCGAAGATGAGGCTCAGATCCTGCATTGTTGTGGCTGTGTGT
GTGGCTACAGCTCCAATTGGACCCCTAGCCTGGGAACCTCCATATGCCGCGGGAGTGGCT
CAAGGAAAAAGGCAAAAAGAAAGAAAGAAAGAAAGACTGATGGATATGCTTTTATACAGT
TGGATTTGTCTGCCTGGCAATTTTTAATTCAGGGCAGCCTTCCTCTCGTGTCATGTAGGG
GCCATAGAGATGCTGTGCGTGGTGAGTGGTGGGTGGTAGGGTCAAGCGCGAAGCCTCGGG
GGCCTCAGCCGTGCAGTGGAGGCCGAGTTTCTCAAGCCTGTCTCTTAGCCTGTGATGGAG
AAAGACCGTGGGTCTTACATCCTCTGAAATGCTCAACCTAAAGCCTAGAAAAACACTCTT
AGAAATGAAGGAAGCAGTCCAGTCACTTCTGCTGGAGCATGAGAATGTGAGAAAATAGAA
TGTGTACATGTATGTGTGACTGGGGCACCATGCTGTGCAGCAGAAAAAAATTGTATTGGG
GAAAGAACGAGAGAAAGAAAGAGGAAAGGAAAGAAAGAAAGAAATGAAGCAAATTCAGCT
GCTCAACACAGGGAGCAAGAAATGAGAGTTGGTGCGTGGGGGCCCTGCCTCCGGTTTGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-118, + strand, RNAz p=0.59758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-118, + strand, RNAz p=0.59758

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-311, gnl|bosTau2|chr13 (5741368-5741050)
               

               
               2-311, gnl|canFam2|chr2 (27953742-27953136)
               

               
               2-311, gnl|dasNov1|scaffold_832 (30536-31135)
               

               
               2-311, gnl|echTel1|scaffold_319535 (35347-34722)
               

               
               2-311, gnl|galGal2|chr1 (4431399-4430790)
               

               
               2-311, gnl|hg17|chr10 (11301703-11302315)
               

               
               2-311, gnl|Hg17|chr10 (11302065-11302377)
               

               
               2-311, gnl|loxAfr1|scaffold_1017 (123124-122512)
               

               
               2-311, gnl|mm7|chr2 (6578833-6578251)
               

               
               2-311, gnl|monDom2|scaffold_30 (9810424-9811039)
               

               
               2-311, gnl|oryCun1|scaffold_206007 (203872-204483)
               

               
               2-311, gnl|panTro1|chr8 (11442657-11443269)
               

               
               2-311, gnl|rheMac2|chr9 (11462822-11463435)
               

               
               2-311, gnl|rn3|chr17 (82933187-82933793)
               

               
               2-311, gnl|xenTro1|scaffold_314 (442048-441356)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-311, gnl|bosTau2|chr13 (5741368-5741050)
               

               
               2-311, gnl|canFam2|chr2 (27953742-27953136)
               

               
               2-311, gnl|dasNov1|scaffold_832 (30536-31135)
               

               
               2-311, gnl|echTel1|scaffold_319535 (35347-34722)
               

               
               2-311, gnl|galGal2|chr1 (4431399-4430790)
               

               
               2-311, gnl|hg17|chr10 (11301703-11302315)
               

               
               2-311, gnl|Hg17|chr10 (11302065-11302377)
               

               
               2-311, gnl|loxAfr1|scaffold_1017 (123124-122512)
               

               
               2-311, gnl|mm7|chr2 (6578833-6578251)
               

               
               2-311, gnl|monDom2|scaffold_30 (9810424-9811039)
               

               
               2-311, gnl|oryCun1|scaffold_206007 (203872-204483)
               

               
               2-311, gnl|panTro1|chr8 (11442657-11443269)
               

               
               2-311, gnl|rheMac2|chr9 (11462822-11463435)
               

               
               2-311, gnl|rn3|chr17 (82933187-82933793)
               

               
               2-311, gnl|xenTro1|scaffold_314 (442048-441356)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	2-311, gnl\|bosTau2\|chr13 (5741368-5741050)
	2-311, gnl\|canFam2\|chr2 (27953742-27953136)
	2-311, gnl\|dasNov1\|scaffold_832 (30536-31135)
	2-311, gnl\|echTel1\|scaffold_319535 (35347-34722)
	2-311, gnl\|galGal2\|chr1 (4431399-4430790)
	2-311, gnl\|hg17\|chr10 (11301703-11302315)
	2-311, gnl\|Hg17\|chr10 (11302065-11302377)
	2-311, gnl\|loxAfr1\|scaffold_1017 (123124-122512)
	2-311, gnl\|mm7\|chr2 (6578833-6578251)
	2-311, gnl\|monDom2\|scaffold_30 (9810424-9811039)
	2-311, gnl\|oryCun1\|scaffold_206007 (203872-204483)
	2-311, gnl\|panTro1\|chr8 (11442657-11443269)
	2-311, gnl\|rheMac2\|chr9 (11462822-11463435)
	2-311, gnl\|rn3\|chr17 (82933187-82933793)
	2-311, gnl\|xenTro1\|scaffold_314 (442048-441356)