Non-Coding RNA Search

Ss1.1-Thy1-THY010095A11.5

Sequence:


               
               TGTGTTTGTGGGTGAAATGGCTGCGCAGGTCGGAGCGGTGCGCGTAGTACGGGCGGTGGC
GGCGCAGGAGGAGCCGGACAAAGAGGGGAAGGAGAAGCCCCATGCTGGGGTCTCGCCACG
GGGAGTGAAGCGGCAACGTCGAGCGAGCAGTGGGGGGTCTCAGGAGAAGCGGGGGCGGCC
GAGCCAGGACCCCCCTCTCGCTCCCCCTCACCGGCGCCGTCGCAGCCGCCAACATCCCGG
GCCGCTGCCGCCAACGAATGCCGCCCCAACTGTCCCAGGCCCTGTTGAGCCTCTGCTCCT
GCCGCCTCCGCCGCCACCTTCGCTGGCACCCGCCGGGCCCGCTGTCGCTGCCCCGCTCCC
CGCTCCGGGCACCTCGGCCCTCTTCACCTTCTCGCCGCTGACGGTGAGCGCGGCCGGGCC
CAAGCATAAGGGCCACAAGGAGCGGCACAAGCACCATCACCACCGCGGCTCTGATGGTGA
TCCCAGCTCCTGCGTTCCGGGAGAGCTCAAGCACAAGGACAAGCAGGAAAACGGCGAGAG
GACTGGAGGGGTGCCTCTAATCAAGGCCCCCAAGAGAGGTGAGAGGGGGCGATGTGCCCC
GAGCTTGAGTTCCATCTAGGTCTCCTCTCTCTGTTGCGATATCCCGCCCCTTTAGCCCTG
AAAGACGCCACCCCCCTGCTTACCCGCCGCCCGCGAGGACGGGGTCCACTGCTGGGGTGG
CCGGGCGTCCCCGCGAGTCCGAGCCGGAGCCGGAGCGGGAGCGCGAGCCGTTTCGAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTTTGTGGGTGAAATGGCTGCGCAGGTCGGAGCGGTGCGCGTAGTACGGGCGGTGGC
GGCGCAGGAGGAGCCGGACAAAGAGGGGAAGGAGAAGCCCCATGCTGGGGTCTCGCCACG
GGGAGTGAAGCGGCAACGTCGAGCGAGCAGTGGGGGGTCTCAGGAGAAGCGGGGGCGGCC
GAGCCAGGACCCCCCTCTCGCTCCCCCTCACCGGCGCCGTCGCAGCCGCCAACATCCCGG
GCCGCTGCCGCCAACGAATGCCGCCCCAACTGTCCCAGGCCCTGTTGAGCCTCTGCTCCT
GCCGCCTCCGCCGCCACCTTCGCTGGCACCCGCCGGGCCCGCTGTCGCTGCCCCGCTCCC
CGCTCCGGGCACCTCGGCCCTCTTCACCTTCTCGCCGCTGACGGTGAGCGCGGCCGGGCC
CAAGCATAAGGGCCACAAGGAGCGGCACAAGCACCATCACCACCGCGGCTCTGATGGTGA
TCCCAGCTCCTGCGTTCCGGGAGAGCTCAAGCACAAGGACAAGCAGGAAAACGGCGAGAG
GACTGGAGGGGTGCCTCTAATCAAGGCCCCCAAGAGAGGTGAGAGGGGGCGATGTGCCCC
GAGCTTGAGTTCCATCTAGGTCTCCTCTCTCTGTTGCGATATCCCGCCCCTTTAGCCCTG
AAAGACGCCACCCCCCTGCTTACCCGCCGCCCGCGAGGACGGGGTCCACTGCTGGGGTGG
CCGGGCGTCCCCGCGAGTCCGAGCCGGAGCCGGAGCGGGAGCGCGAGCCGTTTCGAGGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, + strand, RNAz p=0.510717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.510717

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr3 (24480258-24480938)
               

               
               1-684, gnl|Hg17|chr1 (114066948-114066277)
               

               
               1-684, gnl|Mm7|chr3 (103708560-103709216)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr3 (24480258-24480938)
               

               
               1-684, gnl|Hg17|chr1 (114066948-114066277)
               

               
               1-684, gnl|Mm7|chr3 (103708560-103709216)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-684, gnl\|bosTau2\|chr3 (24480258-24480938)
	1-684, gnl\|Hg17\|chr1 (114066948-114066277)
	1-684, gnl\|Mm7\|chr3 (103708560-103709216)