Non-Coding RNA Search

Ss1.1-Thy1-THY010095C04.5

Sequence:


               
               GGAAGCCACCTCTGCTTGATCTTTTTTTTTTTTTTTTTTTTTTTTACTCGAAGTAGTTAA
CCTTCCTGTAACTTTTTTAAAACTTGTAAAATAACTTTTCCTGCCCACCCCTTCCTCCTC
TAACGCTCAAGCTCTCAACACGAGGGGGTGAGTAGGCGCCATTCAGGCAACCGGGCCAAA
GCCGACGAGGCCGGGCCGAGCTGGGCCTGGACCACAGCCACGACCCCGAGCCCCAGTTGA
GTTTCTGGGCCCCTAGGCCCACTGCCCCGCTCAGAGCCTCCGCAGTGCTGCACATACCCA
CGGGCTGCTCACCACCAGTGAGCAAAAAAAAAAAAAAAAAACAAAACTAGTGGTGGATTT
GAGACAGGAGGACCCCCTGGGCTTTGATCCCATTTTTTAATCAATGTAGCCCCAGGAAGC
CTGAGGCTATTTTACCAGGGTGGAAAAGGAGTTTATCTCCCACCTTTGGTCTTAAGTGCT
TGTCCCCTCCTCACACTGTAACCAGGTAACAGTCTGATAACTAGGGAAGAAAATGAATAA
GCAGCAACCACAGCCCAGGCTGGCTGCGGGTGTCACCCAGGCAAGGCTCTGCTGTGTGGA
TGACGAGATCAAGGCCAGAGGCGGTGCCTAGGTGCAGACGCTTCCATCCTGCTGCCTGCC
CAGCCCATCTTGCCTCCTGGTGCCTCTGGAGGCCCTGTGCCTCCACTAAAGGGAGTTAGT
GGGTATCAAGAGCCAGTGGAGTGGCTCTCGGCTCCAAGCCCCACCCGTGCCTGTGGGAAG
GGCTTTTTACATTGCTATGTGCGCTGTGCTGTGGTTCCTGGGGTGCCCTCGACTGCCCTT
TGCTCAGTAACGGGACCTTGCTAATCAGGGTGTCACTTGACAAAAGTGCCTGGGATTTAA
GTTCCTATCCTGGCTTTGCCCAGCCTCAGCACCTTGTAAGACTGATGATGAAATAAATCA
TGTTAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGCCACCTCTGCTTGATCTTTTTTTTTTTTTTTTTTTTTTTTACTCGAAGTAGTTAA
CCTTCCTGTAACTTTTTTAAAACTTGTAAAATAACTTTTCCTGCCCACCCCTTCCTCCTC
TAACGCTCAAGCTCTCAACACGAGGGGGTGAGTAGGCGCCATTCAGGCAACCGGGCCAAA
GCCGACGAGGCCGGGCCGAGCTGGGCCTGGACCACAGCCACGACCCCGAGCCCCAGTTGA
GTTTCTGGGCCCCTAGGCCCACTGCCCCGCTCAGAGCCTCCGCAGTGCTGCACATACCCA
CGGGCTGCTCACCACCAGTGAGCAAAAAAAAAAAAAAAAAACAAAACTAGTGGTGGATTT
GAGACAGGAGGACCCCCTGGGCTTTGATCCCATTTTTTAATCAATGTAGCCCCAGGAAGC
CTGAGGCTATTTTACCAGGGTGGAAAAGGAGTTTATCTCCCACCTTTGGTCTTAAGTGCT
TGTCCCCTCCTCACACTGTAACCAGGTAACAGTCTGATAACTAGGGAAGAAAATGAATAA
GCAGCAACCACAGCCCAGGCTGGCTGCGGGTGTCACCCAGGCAAGGCTCTGCTGTGTGGA
TGACGAGATCAAGGCCAGAGGCGGTGCCTAGGTGCAGACGCTTCCATCCTGCTGCCTGCC
CAGCCCATCTTGCCTCCTGGTGCCTCTGGAGGCCCTGTGCCTCCACTAAAGGGAGTTAGT
GGGTATCAAGAGCCAGTGGAGTGGCTCTCGGCTCCAAGCCCCACCCGTGCCTGTGGGAAG
GGCTTTTTACATTGCTATGTGCGCTGTGCTGTGGTTCCTGGGGTGCCCTCGACTGCCCTT
TGCTCAGTAACGGGACCTTGCTAATCAGGGTGTCACTTGACAAAAGTGCCTGGGATTTAA
GTTCCTATCCTGGCTTTGCCCAGCCTCAGCACCTTGTAAGACTGATGATGAAATAAATCA
TGTTAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               476-584, - strand, RNAz p=0.745419
               

               
               703-813, + strand, RNAz p=0.913748

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               476-584, - strand, RNAz p=0.745419
               

               
               703-813, + strand, RNAz p=0.913748

Similar Transcript(s): 2 entry(ies)

More info

Similar Transcript(s): 2 entry(ies)

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               703-813, BP162216 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP162216.1|), blast E-value=0, identity=100% 
               

               
               703-813, DB807394 full-length enriched swine cDNA library, adult lung Sus 
(dbj|DB807394.1|), blast E-value=0, identity=100%

Similar Transcript(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               703-813, BP162216 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP162216.1|), blast E-value=0, identity=100% 
               

               
               703-813, DB807394 full-length enriched swine cDNA library, adult lung Sus 
(dbj|DB807394.1|), blast E-value=0, identity=100%

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               9-584, gnl|bosTau2|chr23 (20968-20418)
               

               
               9-584, gnl|Hg17|chr17 (37379522-37380291)
               

               
               9-584, gnl|Mm7|chr11 (100689891-100690402)
               


               
               666-977, gnl|bosTau2|chr14 (36562448-36562144)
               

               
               666-977, gnl|Mm7|chr11 (100690494-100690767)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-584, gnl|bosTau2|chr23 (20968-20418)
               

               
               9-584, gnl|Hg17|chr17 (37379522-37380291)
               

               
               9-584, gnl|Mm7|chr11 (100689891-100690402)
               


               
               666-977, gnl|bosTau2|chr14 (36562448-36562144)
               

               
               666-977, gnl|Mm7|chr11 (100690494-100690767)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               hyp (1.99971)
               

               
               fbs (1.92881)
               

               
               fhi (1.35662)
               

               
               fce (0.814775)
               

               
               csp (0.483559)
               

               
               cag (0.453583)
               

               
               cly (0.361925)
               

               
               cbr (0.255951)
               

               
               eep (0.245128)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (1.99971)
               

               
               fbs (1.92881)
               

               
               fhi (1.35662)
               

               
               fce (0.814775)
               

               
               csp (0.483559)
               

               
               cag (0.453583)
               

               
               cly (0.361925)
               

               
               cbr (0.255951)
               

               
               eep (0.245128)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	476-584, - strand, RNAz p=0.745419
	703-813, + strand, RNAz p=0.913748

	703-813, BP162216 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP162216.1\|), blast E-value=0, identity=100%
	703-813, DB807394 full-length enriched swine cDNA library, adult lung Sus (dbj\|DB807394.1\|), blast E-value=0, identity=100%

	9-584, gnl\|bosTau2\|chr23 (20968-20418)
	9-584, gnl\|Hg17\|chr17 (37379522-37380291)
	9-584, gnl\|Mm7\|chr11 (100689891-100690402)

	666-977, gnl\|bosTau2\|chr14 (36562448-36562144)
	666-977, gnl\|Mm7\|chr11 (100690494-100690767)

	hyp (1.99971)
	fbs (1.92881)
	fhi (1.35662)
	fce (0.814775)
	csp (0.483559)
	cag (0.453583)
	cly (0.361925)
	cbr (0.255951)
	eep (0.245128)
	ecc (0.23007)
	fli (0.202881)
	fcc (0.197785)
	eje (0.197668)
	ton (0.1755)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	pla (0.133672)
	cov (0.132153)
	med (0.116252)