Non-Coding RNA Search

Ss1.1-Thy1-THY010095C09.5

Sequence:


               
               GGTCACTCAGAATTGGCAGCTGCTGGAAAAGACGAGCCCCTTGAGAACATGCTAGCGTTT
TTCTTCCATTTGGTCTACCATGACCACTTGCTAAGCACTAAACGATCATCTGTACAGTAA
AACAAATGACAAAAAAAAAAAGATGGCCTGTTAATCTGTGTACATTTTTTTTGCCCAGAG
ACAAACGTGCCTTGAGAGAGCTCACCTCATCTTGTTTGGGTGGGGAGCCTGTGCCTCATG
CTATGTGAAGCTCGCTGCTTCCAAGATGAGACTCTTAAATCCTCATAGCTGTGCATGTCC
ATGAGTTTGTGAAAAAAGAATGTATATATATTTATAAGTGGGTCACTTTGCTGTCCAGCA
GACATTGAAGAATATTGTAAATCCACTCTTTAAAAAGAAAAAAATCCTCATAGCTGAATT
TGGGTGGCTTGTGCCTTCCTGAATTCCTTTCTACCTGCATAATTTAAGGACGTTCATTTT
TTGGTTAAAAATAACTAAGGCTTCAAATTCCCCAGTGCCTCAAATGCACACAGGGATCTC
CCTGTTGGCCTCTCAGTTAACTGCTACCATCCATGTATTCGTTTTGGCTTACGTTTTTTT
TTTTTTCTTTGAGGGGAAAAAAAAATAGTCTTAGCAAACTCGCACATTTTCATTTACCTG
TAGCATTCCATTTGTTTAACCAGGGCTTGACATATCATTTAAGGCAATCATTAGTCTTCA
CCACAGGACAAATAGAATGTCAGCCATCAATTTGCTCTTTGTGTTTTTATGTTCTGTAGA
TACTGTCGTGTACATTTCACTGATGGCATTTACTTGGTGGCGACCTTGACAAAATATAGC
TGTAAGTTTAGCGGAGAAAGTTCTGAGCCAGGAATTAGGAAACCTGAGTTCTGGGCTCTA
CTCTGATATTAACCAGCTGGAATCATTTAGCCTCTCAGAGTTTCTCTTTCCTCAAGTCCA
AATTATTGATCCTAATTGAGCACTTTGTAACTTGGAGAAGTAGTAGCATTTGCTTGTGTT
TGCTTAGTTTTGCCAGCATACGTGTCAAAATGGCATTATTTTAAAGTTCCGAAGCCTGTA
TTTTTTTTACTACTGCCCAACTTAAATACAGGTACACCAGAAACTTGAAATTTCTTGCTG
GATGCGCCACCATGGCCTCTATCATGATTATTTAAGTGTCAAAGTAGCCGGAAGACAGTC
TGATACAATGAATCTCAAAACCTGTGGTCCCGTGTAGCACCGAAGAAATAGTAGCTTTAT
AGGCCTAGTGCGAGTCAGTGAAAATTTCAGATCCCTTGCCTGCTGCAATGAAAACTCCAG
TTGGAATCTTACATTTTAGAGCGTGTTGAGCTTTTCTAGCTGAGGCCTGACATCTGACTT
GGCTTCTGCTCCCCCTCAGTCCTCCAAAGCCCAAGGACTCTGCGACTGCACCTGCACCCG
GGAGAAACAGCAGTCAGGCGGCCACTGGGCAAAGCCAGGCCCAGGCAGCTGCTGGCTCGC
ATCAGCTCTCCGTGGGTCCCGCACACAATTCCGCTGGCCCGAGCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCACTCAGAATTGGCAGCTGCTGGAAAAGACGAGCCCCTTGAGAACATGCTAGCGTTT
TTCTTCCATTTGGTCTACCATGACCACTTGCTAAGCACTAAACGATCATCTGTACAGTAA
AACAAATGACAAAAAAAAAAAGATGGCCTGTTAATCTGTGTACATTTTTTTTGCCCAGAG
ACAAACGTGCCTTGAGAGAGCTCACCTCATCTTGTTTGGGTGGGGAGCCTGTGCCTCATG
CTATGTGAAGCTCGCTGCTTCCAAGATGAGACTCTTAAATCCTCATAGCTGTGCATGTCC
ATGAGTTTGTGAAAAAAGAATGTATATATATTTATAAGTGGGTCACTTTGCTGTCCAGCA
GACATTGAAGAATATTGTAAATCCACTCTTTAAAAAGAAAAAAATCCTCATAGCTGAATT
TGGGTGGCTTGTGCCTTCCTGAATTCCTTTCTACCTGCATAATTTAAGGACGTTCATTTT
TTGGTTAAAAATAACTAAGGCTTCAAATTCCCCAGTGCCTCAAATGCACACAGGGATCTC
CCTGTTGGCCTCTCAGTTAACTGCTACCATCCATGTATTCGTTTTGGCTTACGTTTTTTT
TTTTTTCTTTGAGGGGAAAAAAAAATAGTCTTAGCAAACTCGCACATTTTCATTTACCTG
TAGCATTCCATTTGTTTAACCAGGGCTTGACATATCATTTAAGGCAATCATTAGTCTTCA
CCACAGGACAAATAGAATGTCAGCCATCAATTTGCTCTTTGTGTTTTTATGTTCTGTAGA
TACTGTCGTGTACATTTCACTGATGGCATTTACTTGGTGGCGACCTTGACAAAATATAGC
TGTAAGTTTAGCGGAGAAAGTTCTGAGCCAGGAATTAGGAAACCTGAGTTCTGGGCTCTA
CTCTGATATTAACCAGCTGGAATCATTTAGCCTCTCAGAGTTTCTCTTTCCTCAAGTCCA
AATTATTGATCCTAATTGAGCACTTTGTAACTTGGAGAAGTAGTAGCATTTGCTTGTGTT
TGCTTAGTTTTGCCAGCATACGTGTCAAAATGGCATTATTTTAAAGTTCCGAAGCCTGTA
TTTTTTTTACTACTGCCCAACTTAAATACAGGTACACCAGAAACTTGAAATTTCTTGCTG
GATGCGCCACCATGGCCTCTATCATGATTATTTAAGTGTCAAAGTAGCCGGAAGACAGTC
TGATACAATGAATCTCAAAACCTGTGGTCCCGTGTAGCACCGAAGAAATAGTAGCTTTAT
AGGCCTAGTGCGAGTCAGTGAAAATTTCAGATCCCTTGCCTGCTGCAATGAAAACTCCAG
TTGGAATCTTACATTTTAGAGCGTGTTGAGCTTTTCTAGCTGAGGCCTGACATCTGACTT
GGCTTCTGCTCCCCCTCAGTCCTCCAAAGCCCAAGGACTCTGCGACTGCACCTGCACCCG
GGAGAAACAGCAGTCAGGCGGCCACTGGGCAAAGCCAGGCCCAGGCAGCTGCTGGCTCGC
ATCAGCTCTCCGTGGGTCCCGCACACAATTCCGCTGGCCCGAGCCCAC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               7-290, gnl|bosTau2|chr25 (22475379-22475660)
               

               
               7-290, gnl|Hg17|chr16 (24856803-24856521)
               


               
               402-1546, gnl|bosTau2|chr25 (22475647-22476783)
               

               
               402-1546, gnl|Hg17|chr16 (24856534-24854309)
               

               
               402-1546, gnl|Mm7|chr7 (119396122-119394719)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-290, gnl|bosTau2|chr25 (22475379-22475660)
               

               
               7-290, gnl|Hg17|chr16 (24856803-24856521)
               


               
               402-1546, gnl|bosTau2|chr25 (22475647-22476783)
               

               
               402-1546, gnl|Hg17|chr16 (24856534-24854309)
               

               
               402-1546, gnl|Mm7|chr7 (119396122-119394719)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	7-290, gnl\|bosTau2\|chr25 (22475379-22475660)
	7-290, gnl\|Hg17\|chr16 (24856803-24856521)

	402-1546, gnl\|bosTau2\|chr25 (22475647-22476783)
	402-1546, gnl\|Hg17\|chr16 (24856534-24854309)
	402-1546, gnl\|Mm7\|chr7 (119396122-119394719)