Non-Coding RNA Search

Ss1.1-Thy1-THY010095D05.5

Sequence:


               
               CTTGCGCACCCCTATAGCGCCTGGTGGTTGCGGCTGGTTCGCCGCCGGGTATGTGAAGAG
GGTAGACCTGTGTGGACCTAGCTGTTCCCCGTGCGACTCGTCACCATGAGCAGCACCTTA
GCCAAGATCGCGGAGATCGAAGCCGAGATGGCTCGGACTCAAAAGAACAAGGCCACAGCA
CACCACCTAGGGCTGCTTAAGGCTCGCCTTGCTAAGCTTCGCAGGGAACTCATTACTCCA
AAAGGTGGTGGTGGTGGTGGGCCAGGAGAAGGATTTGATGTTGCCAAGACAGGTGATGCT
CGGATTGGGTTTGTGGGTTTTCCATCTGTGGGGAAGTCAACATTGCTCAGTAACCTGGCG
GGGGTATATTCTGAGGTGGCAGCCTATGAGTTCACTACTCTGACCACAGTGCCTGGTGTC
ATCAGATATAAAGGTGCCAAGATCCAGCTTCTGGATCTCCCCGGTATCATTGAAGGTGCC
AAGGATGGGAAAGGTAGAGGCCGTCAAGTCATTGCAGTGGCCAGAACGTGTAACTTGATC
TTGATTGTTCTGGATGTCCTGAAACCTTTGGGACATAAGAAGATAATTGAAAATGAGCTG
GAAGGCTTTGGCATTCGCTTGAACAGCAAACCTCCCAACATTGGCTTTAAGAAGAAGGAT
AAGGGAGGCATTAATCTCACGACTACGTGCCCTCAGAGTGAGCTGGATGCTGAAACTGTA
AAGAGCATTCTGGCTGAATACAAAATCCATAATGCTGATGTGACTCTGCGTAGTGATGCC
ACAGCAGATGACCTCATTGATGTGGTGGAAGGAAACAGAGTTTATATCCCTTGTATCTAT
GTGTTAAATAAGATCGATCAGATCTCCATTGAGGAATTGGATATCATCTATAAGGTGCCT
CACTGTGTACCCATCTCTGCCCATCACCGCTGGAATTTTGATGACCTCTTGGAAAAGATC
TGGGATTATCTGAAACTAGTGAGGATTTACACCAAACCCAAAGGCCAGTTGCCAGATTAC
ACATCCCCAGTGGTGTTGCCTTACTCCAGGACCACGGTGGAGGATTTCTGCATGAAGATT
CACAAAAATCTTATCAAGGAATTTAAATACGCTCTGGTGTGGGGTCTTTCTGTGAAACAC
AATCCTCAAAAAGTGGGTAAAGACCATACGTTGGAGGACGAGGATGTCATTCAGATTGTG
AAGAAGTGAAACCTTCCCCTTCCCCATCTGCCGGGCCAATCACAGCAGCTTTCCTCATGA
CCAAGCACCCATCCCCAAGCCCTTTCTGGCTTTGACAGCCATTGGATCAGGATACAGGGG
AGGGAGATGGAGGCACCCAAATTGGAACTTCCCTTGTCTTAACTTGGTGTCACCTTGTAT
ATGAAACTGCATAAAGGACCTGGTAGGCCAGCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCGCACCCCTATAGCGCCTGGTGGTTGCGGCTGGTTCGCCGCCGGGTATGTGAAGAG
GGTAGACCTGTGTGGACCTAGCTGTTCCCCGTGCGACTCGTCACCATGAGCAGCACCTTA
GCCAAGATCGCGGAGATCGAAGCCGAGATGGCTCGGACTCAAAAGAACAAGGCCACAGCA
CACCACCTAGGGCTGCTTAAGGCTCGCCTTGCTAAGCTTCGCAGGGAACTCATTACTCCA
AAAGGTGGTGGTGGTGGTGGGCCAGGAGAAGGATTTGATGTTGCCAAGACAGGTGATGCT
CGGATTGGGTTTGTGGGTTTTCCATCTGTGGGGAAGTCAACATTGCTCAGTAACCTGGCG
GGGGTATATTCTGAGGTGGCAGCCTATGAGTTCACTACTCTGACCACAGTGCCTGGTGTC
ATCAGATATAAAGGTGCCAAGATCCAGCTTCTGGATCTCCCCGGTATCATTGAAGGTGCC
AAGGATGGGAAAGGTAGAGGCCGTCAAGTCATTGCAGTGGCCAGAACGTGTAACTTGATC
TTGATTGTTCTGGATGTCCTGAAACCTTTGGGACATAAGAAGATAATTGAAAATGAGCTG
GAAGGCTTTGGCATTCGCTTGAACAGCAAACCTCCCAACATTGGCTTTAAGAAGAAGGAT
AAGGGAGGCATTAATCTCACGACTACGTGCCCTCAGAGTGAGCTGGATGCTGAAACTGTA
AAGAGCATTCTGGCTGAATACAAAATCCATAATGCTGATGTGACTCTGCGTAGTGATGCC
ACAGCAGATGACCTCATTGATGTGGTGGAAGGAAACAGAGTTTATATCCCTTGTATCTAT
GTGTTAAATAAGATCGATCAGATCTCCATTGAGGAATTGGATATCATCTATAAGGTGCCT
CACTGTGTACCCATCTCTGCCCATCACCGCTGGAATTTTGATGACCTCTTGGAAAAGATC
TGGGATTATCTGAAACTAGTGAGGATTTACACCAAACCCAAAGGCCAGTTGCCAGATTAC
ACATCCCCAGTGGTGTTGCCTTACTCCAGGACCACGGTGGAGGATTTCTGCATGAAGATT
CACAAAAATCTTATCAAGGAATTTAAATACGCTCTGGTGTGGGGTCTTTCTGTGAAACAC
AATCCTCAAAAAGTGGGTAAAGACCATACGTTGGAGGACGAGGATGTCATTCAGATTGTG
AAGAAGTGAAACCTTCCCCTTCCCCATCTGCCGGGCCAATCACAGCAGCTTTCCTCATGA
CCAAGCACCCATCCCCAAGCCCTTTCTGGCTTTGACAGCCATTGGATCAGGATACAGGGG
AGGGAGATGGAGGCACCCAAATTGGAACTTCCCTTGTCTTAACTTGGTGTCACCTTGTAT
ATGAAACTGCATAAAGGACCTGGTAGGCCAGCTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6FGP8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FGP8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               752-842, - strand, RNAz p=0.557809

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               752-842, - strand, RNAz p=0.557809

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1416, gnl|bosTau2|chr14 (36096288-36094874)
               

               
               1-1416, gnl|Hg17|chr2 (20362500-20361071)
               

               
               1-1416, gnl|Mm7|chr11 (3218408-3202133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1416, gnl|bosTau2|chr14 (36096288-36094874)
               

               
               1-1416, gnl|Hg17|chr2 (20362500-20361071)
               

               
               1-1416, gnl|Mm7|chr11 (3218408-3202133)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               cte (0.58548)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	1-1416, gnl\|bosTau2\|chr14 (36096288-36094874)
	1-1416, gnl\|Hg17\|chr2 (20362500-20361071)
	1-1416, gnl\|Mm7\|chr11 (3218408-3202133)

	cte (0.58548)
	amn (0.417711)
	elu (0.385356)
	cty (0.31224)
	bfe (0.299715)
	pty (0.285429)
	fce (0.271592)
	ova (0.258264)
	pan (0.23596)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	fcc (0.197785)
	ill (0.175593)
	mcp (0.170648)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	spl (0.143184)
	lnt (0.142308)
	cst (0.140036)
	sug (0.127291)
	eep (0.122564)
	cbl (0.114797)
	jej (0.0989218)