Ss1.1-Thy1-THY010095E02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTTCCCTCGGTCTCCGCCGCCTCCGCCGCCTCCGCGCCGCAGGCCCGGGGCGCTCGCA CTCCAGGCTCTGCCCGGCCCCGAGTCTCTGCGTCCCCGCGTCCCCGCGCCCCGGCTCCCG CAGGATGACGCTCAAGGCGAGCGAGAGCGAGGGCGGGGGCAGCATGCGCACGGCGCTCTC CGACCTCTACCTGGAGCACTTGCTGCAGAAGCGCAGCCGGCCCGAGGCCCTGTCGCAGCA GGCCAGCGCCGTGGCCGAGGACATGTACACCAACGGCTCCGCCGCCCCAGGCAGCCCCGC GCAGGCCAAGGGGCAGGAGGTGCGGAAGGTGCGGCTCATCCAGTTTGAGAAGGTCACCGA GGAGCCCATGGGCATCACGCTGAAGCTGAATGAGAAGCAGTCCTGCACGGTGGCCAGGAT TCTCCACGGCGGCATGGTTCACAGACAAGGTTCCCTCCACGTCGGGGATGAGATCCTAGA AATCAATGGCACCAATGTGACAGATCACTCGGTGGATCAGCTGCAGAAGGCGATGAAAGA AACCAAAGGAACCATCTCCTTAAAAGTGATTCCCAACCAGCAAAATCGGCTGCCTGCGCT GCAGATGTTCATGCGGGCCCAGTTCGACTACGACCCCAGAAAGGACAACCTGATCCCTTG CAAGGAGGCCGGCCTGAAGTTTGCTACCGGCGACGTCATCCAGATCATCAACAAGGACGA CAGCAACTGGTGGCAGGGGCGAGTGGAAGGCTCCGCCAGGGAGTCCGCGGGCTTGATCCC TTCTCCCGAGCTGCAGGAGTGGCGAGTGGCGAGCACAGCGCAGTCGGCCCCGAGCGAGGC TCCGAGCTGCAGTCCCTTCGGGAAGAAGAAGAAGTACAAGGACAAGTACCTGGCCAAGCA CAGCGCGATTTTTGACCAGTTGGATGTCGTCTCCTACGAGGAGGTGGTTCGGCTGCCCGC GTTCAAGAGGAAGACGCTGGTGCTGATTGGAGCCAGCGGGGTGGGCCGGAGCCACGTCAA GAGTGCCCTGCTCAGCCGGAACCCGGAGAAGTTCGCCTACCCCGCGCCCTATACCACGCG GCCGCCCAGGAAGAGCGAGGAGGACGGCGGGGCTTATCACTTCATCTCCACGGAGGAGAT GACGCGCAGCATCTCTGCCAACGAGTTCTTGGAGTTCGGCAGCTACCAGGGCAACATGTT TGGCACCAAGTTTGAAACCGTGCATCAGATTCATCAGCAGGACAAGATCGCCATCCTTGA CATTGAGCCACAGACCCTGAAGATCGTTCGGACAGCAGAACTTTCGCCTTTCATTGTGTT CATCGCACCTACTGACCAGGGCGCTCAGACGGAGGCCCTGCAGCAGCTGCAGAAGGACTC GGAGGCCATCCGCAGCCAGTACGCTCACTACTTCGACCTGTCGCTGGTCAACAATGGTGT CGACGAAACGCTGAAGCAGCTGCAGGAAGCCTTCGACCAGGCGTGCACTTCTCCGCAGTG GGTGCCTGTGTCCTGGGTTTACTAACTCGCGCTGCCCTTTGCTTTAAGACCGCCAGGTCG CCCCGGCTCGTTTTCTGTCAGCTTCCAGCTCTCCACAGCTGTCCTCGTGAGGCAAGTGGG TTTGTCTGGCTCCAGCTGCTGCTCAGGATTTCCAAAGGCTCTCTGGAAATCAGGGGCCGG AGGCCCTGCGCCGAGGCAGCTGCTCACCGGAGATGGCACGCGAGGGGAGGCAGAGCGAAG AGCCCGTCCCTCTAAAGCCTGCACTCCCTCCGCTGCCGTCCCTCTGGGCTTCTCCTTTGC TTTCAAAAAAGCGTTACCTGCAACTTTCTAAATGCCACCCTGAACCAGCTGTGCAATAGG ACGCCGTGTGCACTAGGCAAACCCTCAAAAGCAATAAACGTGTCGCTGTGTTTAAACGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTTCCCTCGGTCTCCGCCGCCTCCGCCGCCTCCGCGCCGCAGGCCCGGGGCGCTCGCA CTCCAGGCTCTGCCCGGCCCCGAGTCTCTGCGTCCCCGCGTCCCCGCGCCCCGGCTCCCG CAGGATGACGCTCAAGGCGAGCGAGAGCGAGGGCGGGGGCAGCATGCGCACGGCGCTCTC CGACCTCTACCTGGAGCACTTGCTGCAGAAGCGCAGCCGGCCCGAGGCCCTGTCGCAGCA GGCCAGCGCCGTGGCCGAGGACATGTACACCAACGGCTCCGCCGCCCCAGGCAGCCCCGC GCAGGCCAAGGGGCAGGAGGTGCGGAAGGTGCGGCTCATCCAGTTTGAGAAGGTCACCGA GGAGCCCATGGGCATCACGCTGAAGCTGAATGAGAAGCAGTCCTGCACGGTGGCCAGGAT TCTCCACGGCGGCATGGTTCACAGACAAGGTTCCCTCCACGTCGGGGATGAGATCCTAGA AATCAATGGCACCAATGTGACAGATCACTCGGTGGATCAGCTGCAGAAGGCGATGAAAGA AACCAAAGGAACCATCTCCTTAAAAGTGATTCCCAACCAGCAAAATCGGCTGCCTGCGCT GCAGATGTTCATGCGGGCCCAGTTCGACTACGACCCCAGAAAGGACAACCTGATCCCTTG CAAGGAGGCCGGCCTGAAGTTTGCTACCGGCGACGTCATCCAGATCATCAACAAGGACGA CAGCAACTGGTGGCAGGGGCGAGTGGAAGGCTCCGCCAGGGAGTCCGCGGGCTTGATCCC TTCTCCCGAGCTGCAGGAGTGGCGAGTGGCGAGCACAGCGCAGTCGGCCCCGAGCGAGGC TCCGAGCTGCAGTCCCTTCGGGAAGAAGAAGAAGTACAAGGACAAGTACCTGGCCAAGCA CAGCGCGATTTTTGACCAGTTGGATGTCGTCTCCTACGAGGAGGTGGTTCGGCTGCCCGC GTTCAAGAGGAAGACGCTGGTGCTGATTGGAGCCAGCGGGGTGGGCCGGAGCCACGTCAA GAGTGCCCTGCTCAGCCGGAACCCGGAGAAGTTCGCCTACCCCGCGCCCTATACCACGCG GCCGCCCAGGAAGAGCGAGGAGGACGGCGGGGCTTATCACTTCATCTCCACGGAGGAGAT GACGCGCAGCATCTCTGCCAACGAGTTCTTGGAGTTCGGCAGCTACCAGGGCAACATGTT TGGCACCAAGTTTGAAACCGTGCATCAGATTCATCAGCAGGACAAGATCGCCATCCTTGA CATTGAGCCACAGACCCTGAAGATCGTTCGGACAGCAGAACTTTCGCCTTTCATTGTGTT CATCGCACCTACTGACCAGGGCGCTCAGACGGAGGCCCTGCAGCAGCTGCAGAAGGACTC GGAGGCCATCCGCAGCCAGTACGCTCACTACTTCGACCTGTCGCTGGTCAACAATGGTGT CGACGAAACGCTGAAGCAGCTGCAGGAAGCCTTCGACCAGGCGTGCACTTCTCCGCAGTG GGTGCCTGTGTCCTGGGTTTACTAACTCGCGCTGCCCTTTGCTTTAAGACCGCCAGGTCG CCCCGGCTCGTTTTCTGTCAGCTTCCAGCTCTCCACAGCTGTCCTCGTGAGGCAAGTGGG TTTGTCTGGCTCCAGCTGCTGCTCAGGATTTCCAAAGGCTCTCTGGAAATCAGGGGCCGG AGGCCCTGCGCCGAGGCAGCTGCTCACCGGAGATGGCACGCGAGGGGAGGCAGAGCGAAG AGCCCGTCCCTCTAAAGCCTGCACTCCCTCCGCTGCCGTCCCTCTGGGCTTCTCCTTTGC TTTCAAAAAAGCGTTACCTGCAACTTTCTAAATGCCACCCTGAACCAGCTGTGCAATAGG ACGCCGTGTGCACTAGGCAAACCCTCAAAAGCAATAAACGTGTCGCTGTGTTTAAACGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 12-227, gnl|bosTau2|chrX (13296967-13297189) | |
| 12-227, gnl|Hg17|chrX (153597444-153597250) | |
| 12-227, gnl|Mm7|chrX (70517597-70517373) | |
| 231-371, gnl|bosTau2|chrX (13312101-13312241) | |
| 231-371, gnl|Hg17|chrX (153584260-153584120) | |
| 231-371, gnl|Mm7|chrX (70512525-70512385) | |
| 602-806, gnl|bosTau2|chrX (13320968-13321172) | |
| 602-806, gnl|canFam2|chrX (125880147-125880380) | |
| 602-806, gnl|danRer3|chrUn (51397666-51397444) | |
| 602-806, gnl|dasNov1|scaffold_10054 (17562-17760) | |
| 602-806, gnl|echTel1|scaffold_280324 (14848-14625) | |
| 602-806, gnl|fr1|chrUn (5943308-5943106) | |
| 602-806, gnl|galGal2|chr4 (1966282-1966504) | |
| 602-806, gnl|hg17|chrX (153578169-153578401) | |
| 602-806, gnl|Hg17|chrX (153578381-153578178) | |
| 602-806, gnl|loxAfr1|scaffold_81441 (5640-5850) | |
| 602-806, gnl|mm7|chrX (70504392-70504620) | |
| 602-806, gnl|Mm7|chrX (70504604-70504400) | |
| 602-806, gnl|monDom2|scaffold_197 (943978-944186) | |
| 602-806, gnl|oryCun1|scaffold_209146 (36672-36864) | |
| 602-806, gnl|panTro1|chrX (158880862-158881094) | |
| 602-806, gnl|rheMac2|chrX (152780717-152780949) | |
| 602-806, gnl|rn3|chrX (21278137-21277896) | |
| 602-806, gnl|tetNig1|chr7 (6772306-6772517) | |
| 602-806, gnl|xenTro1|scaffold_145 (1046336-1046123) | |
| 1071-1273, gnl|bosTau2|chrX (13326366-13326568) | |
| 1071-1273, gnl|canFam2|chrX (125874401-125874619) | |
| 1071-1273, gnl|danRer3|chrUn (51402950-51402728) | |
| 1071-1273, gnl|dasNov1|scaffold_10054 (17094-17296) | |
| 1071-1273, gnl|echTel1|scaffold_284873 (50062-50284) | |
| 1071-1273, gnl|fr1|chrUn (5944131-5943916) | |
| 1071-1273, gnl|galGal2|chr4 (1963917-1964138) | |
| 1071-1273, gnl|hg17|chrX (153573563-153573786) | |
| 1071-1273, gnl|Hg17|chrX (153573781-153573579) | |
| 1071-1273, gnl|loxAfr1|scaffold_162599 (666-889) | |
| 1071-1273, gnl|mm7|chrX (70498832-70499055) | |
| 1071-1273, gnl|Mm7|chrX (70499050-70498848) | |
| 1071-1273, gnl|monDom2|scaffold_197 (935495-935700) | |
| 1071-1273, gnl|oryCun1|scaffold_210654 (47079-47302) | |
| 1071-1273, gnl|panTro1|chrX (158876000-158876223) | |
| 1071-1273, gnl|rheMac2|chrX (152775988-152776211) | |
| 1071-1273, gnl|rn3|chrX (21292242-21292037) | |
| 1071-1273, gnl|tetNig1|chr7 (6771483-6771695) | |
| 1071-1273, gnl|xenTro1|scaffold_145 (1050675-1050470) | |
| 1346-1525, gnl|bosTau2|chrX (13328903-13329082) | |
| 1346-1525, gnl|Hg17|chrX (153571335-153571156) | |
| 1346-1525, gnl|Mm7|chrX (70497495-70497316) | |
| 1644-1909, gnl|bosTau2|chrX (13329279-13329551) | |
| 1644-1909, gnl|Hg17|chrX (153570949-153570674) | |
| 1644-1909, gnl|Mm7|chrX (70497165-70496930) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-227, gnl|bosTau2|chrX (13296967-13297189) | |
| 12-227, gnl|Hg17|chrX (153597444-153597250) | |
| 12-227, gnl|Mm7|chrX (70517597-70517373) | |
| 231-371, gnl|bosTau2|chrX (13312101-13312241) | |
| 231-371, gnl|Hg17|chrX (153584260-153584120) | |
| 231-371, gnl|Mm7|chrX (70512525-70512385) | |
| 602-806, gnl|bosTau2|chrX (13320968-13321172) | |
| 602-806, gnl|canFam2|chrX (125880147-125880380) | |
| 602-806, gnl|danRer3|chrUn (51397666-51397444) | |
| 602-806, gnl|dasNov1|scaffold_10054 (17562-17760) | |
| 602-806, gnl|echTel1|scaffold_280324 (14848-14625) | |
| 602-806, gnl|fr1|chrUn (5943308-5943106) | |
| 602-806, gnl|galGal2|chr4 (1966282-1966504) | |
| 602-806, gnl|hg17|chrX (153578169-153578401) | |
| 602-806, gnl|Hg17|chrX (153578381-153578178) | |
| 602-806, gnl|loxAfr1|scaffold_81441 (5640-5850) | |
| 602-806, gnl|mm7|chrX (70504392-70504620) | |
| 602-806, gnl|Mm7|chrX (70504604-70504400) | |
| 602-806, gnl|monDom2|scaffold_197 (943978-944186) | |
| 602-806, gnl|oryCun1|scaffold_209146 (36672-36864) | |
| 602-806, gnl|panTro1|chrX (158880862-158881094) | |
| 602-806, gnl|rheMac2|chrX (152780717-152780949) | |
| 602-806, gnl|rn3|chrX (21278137-21277896) | |
| 602-806, gnl|tetNig1|chr7 (6772306-6772517) | |
| 602-806, gnl|xenTro1|scaffold_145 (1046336-1046123) | |
| 1071-1273, gnl|bosTau2|chrX (13326366-13326568) | |
| 1071-1273, gnl|canFam2|chrX (125874401-125874619) | |
| 1071-1273, gnl|danRer3|chrUn (51402950-51402728) | |
| 1071-1273, gnl|dasNov1|scaffold_10054 (17094-17296) | |
| 1071-1273, gnl|echTel1|scaffold_284873 (50062-50284) | |
| 1071-1273, gnl|fr1|chrUn (5944131-5943916) | |
| 1071-1273, gnl|galGal2|chr4 (1963917-1964138) | |
| 1071-1273, gnl|hg17|chrX (153573563-153573786) | |
| 1071-1273, gnl|Hg17|chrX (153573781-153573579) | |
| 1071-1273, gnl|loxAfr1|scaffold_162599 (666-889) | |
| 1071-1273, gnl|mm7|chrX (70498832-70499055) | |
| 1071-1273, gnl|Mm7|chrX (70499050-70498848) | |
| 1071-1273, gnl|monDom2|scaffold_197 (935495-935700) | |
| 1071-1273, gnl|oryCun1|scaffold_210654 (47079-47302) | |
| 1071-1273, gnl|panTro1|chrX (158876000-158876223) | |
| 1071-1273, gnl|rheMac2|chrX (152775988-152776211) | |
| 1071-1273, gnl|rn3|chrX (21292242-21292037) | |
| 1071-1273, gnl|tetNig1|chr7 (6771483-6771695) | |
| 1071-1273, gnl|xenTro1|scaffold_145 (1050675-1050470) | |
| 1346-1525, gnl|bosTau2|chrX (13328903-13329082) | |
| 1346-1525, gnl|Hg17|chrX (153571335-153571156) | |
| 1346-1525, gnl|Mm7|chrX (70497495-70497316) | |
| 1644-1909, gnl|bosTau2|chrX (13329279-13329551) | |
| 1644-1909, gnl|Hg17|chrX (153570949-153570674) | |
| 1644-1909, gnl|Mm7|chrX (70497165-70496930) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| jej (0.791374) | |
| nje (0.66368) | |
| pla (0.401016) | |
| fhi (0.339155) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.791374) | |
| nje (0.66368) | |
| pla (0.401016) | |
| fhi (0.339155) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |