Ss1.1-Thy1-THY010095G08.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTTCTCATTCATTGTCTTGACGAGAGCATCCTCAGCGGGCAGTCTCCGGCTCCTCCAGCT CCTTCCTCCGCCTCCTCCTCTCCCTCCTCCGTTTGGGGGGTCACTCCTCTCTCAGCAGCA GGATGAGCCGGCAGGTGGTCCGTTCCAGCAAGTTCCGCCACGTGTTTGGACAGCCAGCCA AAGCCGACCAGTGCTATGAGGACGTGCGCGTCTCACAGACCACCTGGGACAGTGGCTTCT GTGCTGTCAACCCCAAGTTCGTGGCCTTGATCTGTGAGGCCAGCGGGGGCGGGGCCTTCC TGGTACTGCCCCTGAGCAAGACTGGCCGTGTGGACAAGAATGCGCCTATGGTCTGTGGCC ACACGGCGCCCGTGCTGGACATCGCCTGGTGCCCGCACAATGATAACGTCATTGCCAGTG GCTCCGAAGATTGCACGGTCATGGTGTGGGAGATCCCTGACGGGGGTCTGACGCTGCCCC TGCGGGAGCCTGTCGTCACCCTGGAGGGCCACACCAAGCGCGTGGGCATCGTGGCCTGGC ACCCCACGGCCCAGAACGTGCTGCTCAGTGCAGGTTGTGACAACGTGATCCTGGTGTGGG ACGTGGGCACTGGGGCGGCCGTGCTGACGCTGGGCTCGGACGTGCACCCGGACACAATCT ACAGCGTGGACTGGAGCCGAGACGGCGCCCTCATCTGCACCTCCTGCCGGGACAAGCGAG TTCGCATCATTGAGCCCCGCAAAGGCACCATTGTAGCGGAGAAGGACCGTCCCCACGAGG GGACCCGGCCCGTGCGAGCTGTGTTTGTGTCCGATGGCAAGATCCTGACCACCGGCTTCA GCCGCATGAGTGAGCGGCAGGTGGCGCTGTGGGACACGAAACACCTGGAGGAGCCGCTGT CCCTGCAGGAGCTGGACACGAGCAGCGGCGTCCTGCTGCCCTTCTTTGACCCCGACACCA ACATTGTCTACCTCTGTGGCAAGGGTGACAGCTCTATCCGGTACTTCGAGATCACTTCCG AGGCCCCGTTCCTGCACTATCTGTCCATGTTCAGTTCCAAGGAGTCTCAGCGTGGCATGG GCTACATGCCCAAGCGTGGTCTGGAGGTGAACAAGTGTGAGATTGCCAGGTTCTACAAGC TGCACGAGCGGAGGTGTGAGCCCATTGCCATGACGGTGCCTAGGAAGTCGGACCTGTTCC AGGAGGACCTGTACCCGCCCACCGCGGGGCCTGATGCTGCCCTCACGGCCGAGGAGTGGC TGGGGGGCCGGGACGCCGGGCCCCTCCTCATTTCCCTCAAGGATGGCTATGTGCCCCCAA AGAGCCGGGAGCTGAGGGTCAACCGGGGCCTGGACACTGGGCGCAGGAGGACGACACCAG AGGCCAGTGGTGCTCCCAGCTCGGATGCCATATCCCGGCTGGAGGAGGAGATGAAGAAGC TCCAGGCCACGGTGCAGGAGCTACAGAAGCGCTTGGATACGCTGGAGGAGACAGTCCAGG CCAAGTAGAGGACCAGCAGCGGGGCCGATGGCATCTCACTCCCTCCACTCCCACACCTCA GGCCGCAGGGGTAGATAAGAAAATAATAATAAAATGGCTTTATTTTCT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTTCTCATTCATTGTCTTGACGAGAGCATCCTCAGCGGGCAGTCTCCGGCTCCTCCAGCT CCTTCCTCCGCCTCCTCCTCTCCCTCCTCCGTTTGGGGGGTCACTCCTCTCTCAGCAGCA GGATGAGCCGGCAGGTGGTCCGTTCCAGCAAGTTCCGCCACGTGTTTGGACAGCCAGCCA AAGCCGACCAGTGCTATGAGGACGTGCGCGTCTCACAGACCACCTGGGACAGTGGCTTCT GTGCTGTCAACCCCAAGTTCGTGGCCTTGATCTGTGAGGCCAGCGGGGGCGGGGCCTTCC TGGTACTGCCCCTGAGCAAGACTGGCCGTGTGGACAAGAATGCGCCTATGGTCTGTGGCC ACACGGCGCCCGTGCTGGACATCGCCTGGTGCCCGCACAATGATAACGTCATTGCCAGTG GCTCCGAAGATTGCACGGTCATGGTGTGGGAGATCCCTGACGGGGGTCTGACGCTGCCCC TGCGGGAGCCTGTCGTCACCCTGGAGGGCCACACCAAGCGCGTGGGCATCGTGGCCTGGC ACCCCACGGCCCAGAACGTGCTGCTCAGTGCAGGTTGTGACAACGTGATCCTGGTGTGGG ACGTGGGCACTGGGGCGGCCGTGCTGACGCTGGGCTCGGACGTGCACCCGGACACAATCT ACAGCGTGGACTGGAGCCGAGACGGCGCCCTCATCTGCACCTCCTGCCGGGACAAGCGAG TTCGCATCATTGAGCCCCGCAAAGGCACCATTGTAGCGGAGAAGGACCGTCCCCACGAGG GGACCCGGCCCGTGCGAGCTGTGTTTGTGTCCGATGGCAAGATCCTGACCACCGGCTTCA GCCGCATGAGTGAGCGGCAGGTGGCGCTGTGGGACACGAAACACCTGGAGGAGCCGCTGT CCCTGCAGGAGCTGGACACGAGCAGCGGCGTCCTGCTGCCCTTCTTTGACCCCGACACCA ACATTGTCTACCTCTGTGGCAAGGGTGACAGCTCTATCCGGTACTTCGAGATCACTTCCG AGGCCCCGTTCCTGCACTATCTGTCCATGTTCAGTTCCAAGGAGTCTCAGCGTGGCATGG GCTACATGCCCAAGCGTGGTCTGGAGGTGAACAAGTGTGAGATTGCCAGGTTCTACAAGC TGCACGAGCGGAGGTGTGAGCCCATTGCCATGACGGTGCCTAGGAAGTCGGACCTGTTCC AGGAGGACCTGTACCCGCCCACCGCGGGGCCTGATGCTGCCCTCACGGCCGAGGAGTGGC TGGGGGGCCGGGACGCCGGGCCCCTCCTCATTTCCCTCAAGGATGGCTATGTGCCCCCAA AGAGCCGGGAGCTGAGGGTCAACCGGGGCCTGGACACTGGGCGCAGGAGGACGACACCAG AGGCCAGTGGTGCTCCCAGCTCGGATGCCATATCCCGGCTGGAGGAGGAGATGAAGAAGC TCCAGGCCACGGTGCAGGAGCTACAGAAGCGCTTGGATACGCTGGAGGAGACAGTCCAGG CCAAGTAGAGGACCAGCAGCGGGGCCGATGGCATCTCACTCCCTCCACTCCCACACCTCA GGCCGCAGGGGTAGATAAGAAAATAATAATAAAATGGCTTTATTTTCT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
758-878, + strand, RNAz p=0.755321 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
758-878, + strand, RNAz p=0.755321 |
Aligned organism(s): 103 entry(ies) | More info |
Aligned organism(s): 103 entry(ies) | Help | Less info |
105-320, gnl|bosTau2|chr17 (35014376-35014166) | |
105-320, gnl|canFam2|chr26 (21215663-21215857) | |
105-320, gnl|canFam2|chr26 (21215648-21215882) | |
105-320, gnl|canFam2|chr26 (21215702-21215857) | |
105-320, gnl|danRer3|chr5 (25851439-25851267) | |
105-320, gnl|danRer3|chr5 (10542762-10542977) | |
105-320, gnl|danRer3|chr5 (25851401-25851245) | |
105-320, gnl|dasNov1|scaffold_10634 (19736-19541) | |
105-320, gnl|dasNov1|scaffold_10634 (19742-19514) | |
105-320, gnl|dasNov1|scaffold_10634 (19697-19542) | |
105-320, gnl|echTel1|scaffold_250813 (285-438) | |
105-320, gnl|echTel1|scaffold_306796 (3991-3763) | |
105-320, gnl|echTel1|scaffold_306796 (3945-3787) | |
105-320, gnl|fr1|chrUn (66460351-66460143) | |
105-320, gnl|fr1|chrUn (66460366-66460146) | |
105-320, gnl|fr1|chrUn (66460313-66460157) | |
105-320, gnl|galGal2|chr15 (6524144-6523933) | |
105-320, gnl|hg17|chr1 (187482575-187482780) | |
105-320, gnl|hg17|chr12 (106795854-106796088) | |
105-320, gnl|Hg17|chr12 (107597579-107597366) | |
105-320, gnl|hg17|chr2 (24810643-24810798) | |
105-320, gnl|loxAfr1|scaffold_75964 (1365-1559) | |
105-320, gnl|loxAfr1|scaffold_75964 (1359-1585) | |
105-320, gnl|loxAfr1|scaffold_75964 (1404-1559) | |
105-320, gnl|mm7|chr13 (46493045-46492850) | |
105-320, gnl|mm7|chr13 (46493006-46492851) | |
105-320, gnl|mm7|chr5 (113104019-113103782) | |
105-320, gnl|Mm7|chr5 (113104019-113103809) | |
105-320, gnl|monDom2|scaffold_145 (282683-282908) | |
105-320, gnl|oryCun1|scaffold_177519 (23917-23712) | |
105-320, gnl|oryCun1|scaffold_212711 (87425-87200) | |
105-320, gnl|oryCun1|scaffold_212711 (87386-87231) | |
105-320, gnl|panTro1|chr1 (170032068-170032273) | |
105-320, gnl|panTro1|chr10 (109307832-109308066) | |
105-320, gnl|panTro1|chr12 (25688527-25688682) | |
105-320, gnl|rheMac2|chr11 (109711910-109711693) | |
105-320, gnl|rheMac2|chr11 (108916989-108917234) | |
105-320, gnl|rheMac2|chr13 (24593351-24593528) | |
105-320, gnl|rn3|chr12 (43638437-43638640) | |
105-320, gnl|rn3|chr12 (43638422-43638656) | |
105-320, gnl|rn3|chr12 (43638476-43638631) | |
105-320, gnl|tetNig1|chr12 (6479733-6479943) | |
105-320, gnl|tetNig1|chr4 (1751326-1751146) | |
105-320, gnl|xenTro1|scaffold_1137 (216395-216618) | |
443-575, gnl|bosTau2|chr17 (34979651-34979519) | |
443-575, gnl|Hg17|chr12 (107558401-107558269) | |
443-575, gnl|Mm7|chr5 (113074152-113074020) | |
758-878, gnl|bosTau2|chr25 (25085122-25085002) | |
758-878, gnl|Hg17|chr16 (30106203-30106323) | |
758-878, gnl|Mm7|chr7 (122797968-122797848) | |
982-1131, gnl|bosTau2|chr17 (34971403-34971254) | |
982-1131, gnl|canFam2|chr26 (21257905-21257705) | |
982-1131, gnl|danRer3|chr5 (10584296-10584129) | |
982-1131, gnl|dasNov1|scaffold_9484 (47173-46975) | |
982-1131, gnl|echTel1|scaffold_314145 (34425-34224) | |
982-1131, gnl|fr1|chrUn (1894394-1894214) | |
982-1131, gnl|galGal2|chr15 (6506271-6506446) | |
982-1131, gnl|hg17|chr12 (107548509-107548710) | |
982-1131, gnl|Hg17|chr12 (107548661-107548512) | |
982-1131, gnl|loxAfr1|scaffold_4990 (59799-59614) | |
982-1131, gnl|mm7|chr5 (113069280-113069476) | |
982-1131, gnl|Mm7|chr5 (113069432-113069283) | |
982-1131, gnl|monDom2|scaffold_145 (330869-330672) | |
982-1131, gnl|oryCun1|scaffold_212711 (38523-38721) | |
982-1131, gnl|panTro1|chr10_random (2511034-2510833) | |
982-1131, gnl|rheMac2|chr11 (109662841-109663042) | |
982-1131, gnl|rn3|chr12 (43677478-43677283) | |
982-1131, gnl|tetNig1|chr12 (6485105-6484952) | |
982-1131, gnl|xenTro1|scaffold_1137 (233783-233614) | |
1183-1349, gnl|bosTau2|chr29 (39731488-39731654) | |
1183-1349, gnl|Hg17|chr11 (66963001-66962835) | |
1183-1349, gnl|Mm7|chr19 (4048029-4048194) | |
1186-1339, gnl|bosTau2|chr17 (34968896-34968743) | |
1186-1339, gnl|canFam2|chr26 (21260181-21259980) | |
1186-1339, gnl|danRer3|chr5 (10587983-10587792) | |
1186-1339, gnl|dasNov1|scaffold_10634 (18525-18705) | |
1186-1339, gnl|echTel1|scaffold_314145 (37421-37220) | |
1186-1339, gnl|fr1|chrUn (1895117-1894897) | |
1186-1339, gnl|galGal2|chr15 (6505205-6505405) | |
1186-1339, gnl|hg17|chr12 (107544912-107545113) | |
1186-1339, gnl|Hg17|chr12 (107545094-107544941) | |
1186-1339, gnl|loxAfr1|scaffold_4990 (62945-62767) | |
1186-1339, gnl|mm7|chr5 (113067077-113067278) | |
1186-1339, gnl|Mm7|chr5 (113067259-113067106) | |
1186-1339, gnl|monDom2|scaffold_145 (332270-332070) | |
1186-1339, gnl|oryCun1|scaffold_136217 (250-451) | |
1186-1339, gnl|panTro1|chr10_random (2514630-2514429) | |
1186-1339, gnl|rheMac2|chr11 (109659393-109659594) | |
1186-1339, gnl|rn3|chr12 (43679802-43679603) | |
1186-1339, gnl|tetNig1|chr12 (6485721-6485503) | |
1186-1339, gnl|xenTro1|scaffold_1079 (204200-204389) | |
1403-1608, gnl|bosTau2|chr25 (25083672-25083462) | |
1403-1608, gnl|canFam2|chr6 (21180131-21180363) | |
1403-1608, gnl|dasNov1|scaffold_68781 (6289-6522) | |
1403-1608, gnl|echTel1|scaffold_303123 (5203-4974) | |
1403-1608, gnl|hg17|chr16 (29368331-29368557) | |
1403-1608, gnl|Hg17|chr16 (30107681-30107894) | |
1403-1608, gnl|mm7|chr7 (122796558-122796336) | |
1403-1608, gnl|Mm7|chr7 (122796544-122796336) | |
1403-1608, gnl|monDom2|scaffold_5 (119588481-119588196) | |
1403-1608, gnl|oryCun1|scaffold_160658 (7216-6983) | |
1403-1608, gnl|panTro1|chr18 (30871633-30871859) | |
1403-1608, gnl|rn3|chr1 (186002851-186002626) |
Aligned organism(s): 103 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
105-320, gnl|bosTau2|chr17 (35014376-35014166) | |
105-320, gnl|canFam2|chr26 (21215663-21215857) | |
105-320, gnl|canFam2|chr26 (21215648-21215882) | |
105-320, gnl|canFam2|chr26 (21215702-21215857) | |
105-320, gnl|danRer3|chr5 (25851439-25851267) | |
105-320, gnl|danRer3|chr5 (10542762-10542977) | |
105-320, gnl|danRer3|chr5 (25851401-25851245) | |
105-320, gnl|dasNov1|scaffold_10634 (19736-19541) | |
105-320, gnl|dasNov1|scaffold_10634 (19742-19514) | |
105-320, gnl|dasNov1|scaffold_10634 (19697-19542) | |
105-320, gnl|echTel1|scaffold_250813 (285-438) | |
105-320, gnl|echTel1|scaffold_306796 (3991-3763) | |
105-320, gnl|echTel1|scaffold_306796 (3945-3787) | |
105-320, gnl|fr1|chrUn (66460351-66460143) | |
105-320, gnl|fr1|chrUn (66460366-66460146) | |
105-320, gnl|fr1|chrUn (66460313-66460157) | |
105-320, gnl|galGal2|chr15 (6524144-6523933) | |
105-320, gnl|hg17|chr1 (187482575-187482780) | |
105-320, gnl|hg17|chr12 (106795854-106796088) | |
105-320, gnl|Hg17|chr12 (107597579-107597366) | |
105-320, gnl|hg17|chr2 (24810643-24810798) | |
105-320, gnl|loxAfr1|scaffold_75964 (1365-1559) | |
105-320, gnl|loxAfr1|scaffold_75964 (1359-1585) | |
105-320, gnl|loxAfr1|scaffold_75964 (1404-1559) | |
105-320, gnl|mm7|chr13 (46493045-46492850) | |
105-320, gnl|mm7|chr13 (46493006-46492851) | |
105-320, gnl|mm7|chr5 (113104019-113103782) | |
105-320, gnl|Mm7|chr5 (113104019-113103809) | |
105-320, gnl|monDom2|scaffold_145 (282683-282908) | |
105-320, gnl|oryCun1|scaffold_177519 (23917-23712) | |
105-320, gnl|oryCun1|scaffold_212711 (87425-87200) | |
105-320, gnl|oryCun1|scaffold_212711 (87386-87231) | |
105-320, gnl|panTro1|chr1 (170032068-170032273) | |
105-320, gnl|panTro1|chr10 (109307832-109308066) | |
105-320, gnl|panTro1|chr12 (25688527-25688682) | |
105-320, gnl|rheMac2|chr11 (109711910-109711693) | |
105-320, gnl|rheMac2|chr11 (108916989-108917234) | |
105-320, gnl|rheMac2|chr13 (24593351-24593528) | |
105-320, gnl|rn3|chr12 (43638437-43638640) | |
105-320, gnl|rn3|chr12 (43638422-43638656) | |
105-320, gnl|rn3|chr12 (43638476-43638631) | |
105-320, gnl|tetNig1|chr12 (6479733-6479943) | |
105-320, gnl|tetNig1|chr4 (1751326-1751146) | |
105-320, gnl|xenTro1|scaffold_1137 (216395-216618) | |
443-575, gnl|bosTau2|chr17 (34979651-34979519) | |
443-575, gnl|Hg17|chr12 (107558401-107558269) | |
443-575, gnl|Mm7|chr5 (113074152-113074020) | |
758-878, gnl|bosTau2|chr25 (25085122-25085002) | |
758-878, gnl|Hg17|chr16 (30106203-30106323) | |
758-878, gnl|Mm7|chr7 (122797968-122797848) | |
982-1131, gnl|bosTau2|chr17 (34971403-34971254) | |
982-1131, gnl|canFam2|chr26 (21257905-21257705) | |
982-1131, gnl|danRer3|chr5 (10584296-10584129) | |
982-1131, gnl|dasNov1|scaffold_9484 (47173-46975) | |
982-1131, gnl|echTel1|scaffold_314145 (34425-34224) | |
982-1131, gnl|fr1|chrUn (1894394-1894214) | |
982-1131, gnl|galGal2|chr15 (6506271-6506446) | |
982-1131, gnl|hg17|chr12 (107548509-107548710) | |
982-1131, gnl|Hg17|chr12 (107548661-107548512) | |
982-1131, gnl|loxAfr1|scaffold_4990 (59799-59614) | |
982-1131, gnl|mm7|chr5 (113069280-113069476) | |
982-1131, gnl|Mm7|chr5 (113069432-113069283) | |
982-1131, gnl|monDom2|scaffold_145 (330869-330672) | |
982-1131, gnl|oryCun1|scaffold_212711 (38523-38721) | |
982-1131, gnl|panTro1|chr10_random (2511034-2510833) | |
982-1131, gnl|rheMac2|chr11 (109662841-109663042) | |
982-1131, gnl|rn3|chr12 (43677478-43677283) | |
982-1131, gnl|tetNig1|chr12 (6485105-6484952) | |
982-1131, gnl|xenTro1|scaffold_1137 (233783-233614) | |
1183-1349, gnl|bosTau2|chr29 (39731488-39731654) | |
1183-1349, gnl|Hg17|chr11 (66963001-66962835) | |
1183-1349, gnl|Mm7|chr19 (4048029-4048194) | |
1186-1339, gnl|bosTau2|chr17 (34968896-34968743) | |
1186-1339, gnl|canFam2|chr26 (21260181-21259980) | |
1186-1339, gnl|danRer3|chr5 (10587983-10587792) | |
1186-1339, gnl|dasNov1|scaffold_10634 (18525-18705) | |
1186-1339, gnl|echTel1|scaffold_314145 (37421-37220) | |
1186-1339, gnl|fr1|chrUn (1895117-1894897) | |
1186-1339, gnl|galGal2|chr15 (6505205-6505405) | |
1186-1339, gnl|hg17|chr12 (107544912-107545113) | |
1186-1339, gnl|Hg17|chr12 (107545094-107544941) | |
1186-1339, gnl|loxAfr1|scaffold_4990 (62945-62767) | |
1186-1339, gnl|mm7|chr5 (113067077-113067278) | |
1186-1339, gnl|Mm7|chr5 (113067259-113067106) | |
1186-1339, gnl|monDom2|scaffold_145 (332270-332070) | |
1186-1339, gnl|oryCun1|scaffold_136217 (250-451) | |
1186-1339, gnl|panTro1|chr10_random (2514630-2514429) | |
1186-1339, gnl|rheMac2|chr11 (109659393-109659594) | |
1186-1339, gnl|rn3|chr12 (43679802-43679603) | |
1186-1339, gnl|tetNig1|chr12 (6485721-6485503) | |
1186-1339, gnl|xenTro1|scaffold_1079 (204200-204389) | |
1403-1608, gnl|bosTau2|chr25 (25083672-25083462) | |
1403-1608, gnl|canFam2|chr6 (21180131-21180363) | |
1403-1608, gnl|dasNov1|scaffold_68781 (6289-6522) | |
1403-1608, gnl|echTel1|scaffold_303123 (5203-4974) | |
1403-1608, gnl|hg17|chr16 (29368331-29368557) | |
1403-1608, gnl|Hg17|chr16 (30107681-30107894) | |
1403-1608, gnl|mm7|chr7 (122796558-122796336) | |
1403-1608, gnl|Mm7|chr7 (122796544-122796336) | |
1403-1608, gnl|monDom2|scaffold_5 (119588481-119588196) | |
1403-1608, gnl|oryCun1|scaffold_160658 (7216-6983) | |
1403-1608, gnl|panTro1|chr18 (30871633-30871859) | |
1403-1608, gnl|rn3|chr1 (186002851-186002626) |
Expressed library(ies): 13 entry(ies) | More info |
Expressed library(ies): 13 entry(ies) | Help | Less info |
cag (2.11672) | |
lnt (1.42308) | |
csp (1.28949) | |
ill (1.22915) | |
cly (1.20642) | |
med (1.16252) | |
cty (0.936719) | |
fty (0.527519) | |
pty (0.285429) | |
fcc (0.197785) | |
cli (0.152812) | |
lyg (0.133103) | |
clu (0.119646) |
Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cag (2.11672) | |
lnt (1.42308) | |
csp (1.28949) | |
ill (1.22915) | |
cly (1.20642) | |
med (1.16252) | |
cty (0.936719) | |
fty (0.527519) | |
pty (0.285429) | |
fcc (0.197785) | |
cli (0.152812) | |
lyg (0.133103) | |
clu (0.119646) |